
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Clinical_Cnvsarms_onlysig/broadinstitute.org/cancer.genome.analysis/00498/20/CNV2ClinicalAnalysis_nozzle_onlysig_arm.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Clinical_Cnvsarms_onlysig/broadinstitute.org/cancer.genome.analysis/00498/20/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/cnvarms2cluster/OV-TP/3472822/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/OV-TP/3351705/OV-TP.clin.merged.picked.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=OV-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"       "-oT=OV-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=579, in cluster file=569, common to both=562
[1]  80 562
[1] "1p gain"
[1] 3
      1P GAIN CNV 1P GAIN WILD-TYPE 
              104               458 
      1P GAIN CNV 1P GAIN WILD-TYPE 
              104               458 
[1] "1q gain"
[1] 3
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
              160               402 
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
              160               402 
[1] "2p gain"
[1] 3
      2P GAIN CNV 2P GAIN WILD-TYPE 
              128               434 
      2P GAIN CNV 2P GAIN WILD-TYPE 
              128               434 
[1] "2q gain"
[1] 3
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
              102               460 
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
              102               460 
[1] "3p gain"
[1] 3
      3P GAIN CNV 3P GAIN WILD-TYPE 
              109               453 
      3P GAIN CNV 3P GAIN WILD-TYPE 
              109               453 
[1] "3q gain"
[1] 3
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
              205               357 
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
              205               357 
[1] "4p gain"
[1] 3
      4P GAIN CNV 4P GAIN WILD-TYPE 
               31               531 
      4P GAIN CNV 4P GAIN WILD-TYPE 
               31               531 
[1] "4q gain"
[1] 3
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
               16               546 
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
               16               546 
[1] "5p gain"
[1] 3
      5P GAIN CNV 5P GAIN WILD-TYPE 
              144               418 
      5P GAIN CNV 5P GAIN WILD-TYPE 
              144               418 
[1] "5q gain"
[1] 3
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
               33               529 
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
               33               529 
[1] "6p gain"
[1] 3
      6P GAIN CNV 6P GAIN WILD-TYPE 
              120               442 
      6P GAIN CNV 6P GAIN WILD-TYPE 
              120               442 
[1] "6q gain"
[1] 3
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
               62               500 
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
               62               500 
[1] "7p gain"
[1] 3
      7P GAIN CNV 7P GAIN WILD-TYPE 
              124               438 
      7P GAIN CNV 7P GAIN WILD-TYPE 
              124               438 
[1] "7q gain"
[1] 3
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
              150               412 
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
              150               412 
[1] "8p gain"
[1] 3
      8P GAIN CNV 8P GAIN WILD-TYPE 
               86               476 
      8P GAIN CNV 8P GAIN WILD-TYPE 
               86               476 
[1] "8q gain"
[1] 3
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
              203               359 
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
              203               359 
[1] "9p gain"
[1] 3
      9P GAIN CNV 9P GAIN WILD-TYPE 
               59               503 
      9P GAIN CNV 9P GAIN WILD-TYPE 
               59               503 
[1] "9q gain"
[1] 3
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
               27               535 
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
               27               535 
[1] "10p gain"
[1] 3
      10P GAIN CNV 10P GAIN WILD-TYPE 
               130                432 
      10P GAIN CNV 10P GAIN WILD-TYPE 
               130                432 
[1] "10q gain"
[1] 3
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                67                495 
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                67                495 
[1] "11p gain"
[1] 3
      11P GAIN CNV 11P GAIN WILD-TYPE 
                40                522 
      11P GAIN CNV 11P GAIN WILD-TYPE 
                40                522 
[1] "11q gain"
[1] 3
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                61                501 
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                61                501 
[1] "12p gain"
[1] 3
      12P GAIN CNV 12P GAIN WILD-TYPE 
               207                355 
      12P GAIN CNV 12P GAIN WILD-TYPE 
               207                355 
[1] "12q gain"
[1] 3
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
               122                440 
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
               122                440 
[1] "13q gain"
[1] 3
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                41                521 
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                41                521 
[1] "14q gain"
[1] 3
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                33                529 
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                33                529 
[1] "15q gain"
[1] 3
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                25                537 
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                25                537 
[1] "16p gain"
[1] 3
      16P GAIN CNV 16P GAIN WILD-TYPE 
                31                531 
      16P GAIN CNV 16P GAIN WILD-TYPE 
                31                531 
[1] "16q gain"
[1] 3
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                16                546 
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                16                546 
[1] "17p gain"
[1] 3
      17P GAIN CNV 17P GAIN WILD-TYPE 
                11                551 
      17P GAIN CNV 17P GAIN WILD-TYPE 
                11                551 
[1] "17q gain"
[1] 3
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                23                539 
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                23                539 
[1] "18p gain"
[1] 3
      18P GAIN CNV 18P GAIN WILD-TYPE 
                74                488 
      18P GAIN CNV 18P GAIN WILD-TYPE 
                74                488 
[1] "18q gain"
[1] 3
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                41                521 
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                41                521 
[1] "19p gain"
[1] 3
      19P GAIN CNV 19P GAIN WILD-TYPE 
                98                464 
      19P GAIN CNV 19P GAIN WILD-TYPE 
                98                464 
[1] "19q gain"
[1] 3
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
                91                471 
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
                91                471 
[1] "20p gain"
[1] 3
      20P GAIN CNV 20P GAIN WILD-TYPE 
               233                329 
      20P GAIN CNV 20P GAIN WILD-TYPE 
               233                329 
[1] "20q gain"
[1] 3
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
               272                290 
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
               272                290 
[1] "21q gain"
[1] 3
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                70                492 
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                70                492 
[1] "22q gain"
[1] 3
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                 9                553 
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                 9                553 
[1] "Xq gain"
[1] 3
      XQ GAIN CNV XQ GAIN WILD-TYPE 
               34               528 
      XQ GAIN CNV XQ GAIN WILD-TYPE 
               34               528 
[1] "1p loss"
[1] 3
      1P LOSS CNV 1P LOSS WILD-TYPE 
               34               528 
      1P LOSS CNV 1P LOSS WILD-TYPE 
               34               528 
[1] "1q loss"
[1] 3
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
               22               540 
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
               22               540 
[1] "2p loss"
[1] 3
      2P LOSS CNV 2P LOSS WILD-TYPE 
               26               536 
      2P LOSS CNV 2P LOSS WILD-TYPE 
               26               536 
[1] "2q loss"
[1] 3
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
               30               532 
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
               30               532 
[1] "3p loss"
[1] 3
      3P LOSS CNV 3P LOSS WILD-TYPE 
               59               503 
      3P LOSS CNV 3P LOSS WILD-TYPE 
               59               503 
[1] "3q loss"
[1] 3
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
               23               539 
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
               23               539 
[1] "4p loss"
[1] 3
      4P LOSS CNV 4P LOSS WILD-TYPE 
              259               303 
      4P LOSS CNV 4P LOSS WILD-TYPE 
              259               303 
[1] "4q loss"
[1] 3
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
              300               262 
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
              300               262 
[1] "5p loss"
[1] 3
      5P LOSS CNV 5P LOSS WILD-TYPE 
               83               479 
      5P LOSS CNV 5P LOSS WILD-TYPE 
               83               479 
[1] "5q loss"
[1] 3
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
              170               392 
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
              170               392 
[1] "6p loss"
[1] 3
      6P LOSS CNV 6P LOSS WILD-TYPE 
              125               437 
      6P LOSS CNV 6P LOSS WILD-TYPE 
              125               437 
[1] "6q loss"
[1] 3
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
              194               368 
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
              194               368 
[1] "7p loss"
[1] 3
      7P LOSS CNV 7P LOSS WILD-TYPE 
               90               472 
      7P LOSS CNV 7P LOSS WILD-TYPE 
               90               472 
[1] "7q loss"
[1] 3
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
               48               514 
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
               48               514 
[1] "8p loss"
[1] 3
      8P LOSS CNV 8P LOSS WILD-TYPE 
              232               330 
      8P LOSS CNV 8P LOSS WILD-TYPE 
              232               330 
[1] "8q loss"
[1] 3
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
               62               500 
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
               62               500 
[1] "9p loss"
[1] 3
      9P LOSS CNV 9P LOSS WILD-TYPE 
              212               350 
      9P LOSS CNV 9P LOSS WILD-TYPE 
              212               350 
[1] "9q loss"
[1] 3
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
              240               322 
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
              240               322 
[1] "10p loss"
[1] 3
      10P LOSS CNV 10P LOSS WILD-TYPE 
                66                496 
      10P LOSS CNV 10P LOSS WILD-TYPE 
                66                496 
[1] "10q loss"
[1] 3
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
                90                472 
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
                90                472 
[1] "11p loss"
[1] 3
      11P LOSS CNV 11P LOSS WILD-TYPE 
               144                418 
      11P LOSS CNV 11P LOSS WILD-TYPE 
               144                418 
[1] "11q loss"
[1] 3
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
               108                454 
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
               108                454 
[1] "12p loss"
[1] 3
      12P LOSS CNV 12P LOSS WILD-TYPE 
                50                512 
      12P LOSS CNV 12P LOSS WILD-TYPE 
                50                512 
[1] "12q loss"
[1] 3
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                74                488 
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                74                488 
[1] "13q loss"
[1] 3
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
               257                305 
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
               257                305 
[1] "14q loss"
[1] 3
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
               162                400 
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
               162                400 
[1] "15q loss"
[1] 3
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
               216                346 
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
               216                346 
[1] "16p loss"
[1] 3
      16P LOSS CNV 16P LOSS WILD-TYPE 
               268                294 
      16P LOSS CNV 16P LOSS WILD-TYPE 
               268                294 
[1] "16q loss"
[1] 3
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
               356                206 
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
               356                206 
[1] "17p loss"
[1] 3
      17P LOSS CNV 17P LOSS WILD-TYPE 
               424                138 
      17P LOSS CNV 17P LOSS WILD-TYPE 
               424                138 
[1] "17q loss"
[1] 3
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
               328                234 
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
               328                234 
[1] "18p loss"
[1] 3
      18P LOSS CNV 18P LOSS WILD-TYPE 
               183                379 
      18P LOSS CNV 18P LOSS WILD-TYPE 
               183                379 
[1] "18q loss"
[1] 3
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
               233                329 
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
               233                329 
[1] "19p loss"
[1] 3
      19P LOSS CNV 19P LOSS WILD-TYPE 
               143                419 
      19P LOSS CNV 19P LOSS WILD-TYPE 
               143                419 
[1] "19q loss"
[1] 3
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
               143                419 
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
               143                419 
[1] "20p loss"
[1] 3
      20P LOSS CNV 20P LOSS WILD-TYPE 
                37                525 
      20P LOSS CNV 20P LOSS WILD-TYPE 
                37                525 
[1] "20q loss"
[1] 3
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
                22                540 
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
                22                540 
[1] "21q loss"
[1] 3
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
               148                414 
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
               148                414 
[1] "22q loss"
[1] 3
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
               385                177 
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
               385                177 
[1] "Xq loss"
[1] 3
      XQ LOSS CNV XQ LOSS WILD-TYPE 
              100               462 
      XQ LOSS CNV XQ LOSS WILD-TYPE 
              100               462 
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                                      
 [2] "DAYSTODEATH"                                       
 [3] "DAYSTOLASTFOLLOWUP"                                
 [4] "VITALSTATUS"                                       
 [5] "DCCUPLOADDATE"                                     
 [6] "PRIMARYSITEOFDESEASE"                              
 [7] "GENDER"                                            
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"                  
 [9] "RADIATIONTHERAPY"                                  
[10] "KARNOFSKYPERFORMANCESCORE"                         
[11] "EXAMINATIONS.EXAMINATION.KARNOFSKYPERFORMANCESCORE"
[12] "HISTOLOGICALTYPE"                                  
[13] "TUMORGRADE"                                        
[14] "TUMORSTAGE"                                        
[15] "PATIENTTUMORRECURRENCESTATUS"                      
[16] "DAYSTOTUMORRECURRENCE"                             
[17] "CHEMOTHERAPY"                                      
[18] "RADIATIONS.RADIATION.REGIMENINDICATION"            
[19] "DISTANT.METASTASIS"                                
[20] "LYMPH.NODE.METASTASIS"                             
[21] "COMPLETENESS.OF.RESECTION"                         
[22] "TUMOR.STAGECODE"                                   
[23] "NEOPLASM.DISEASESTAGE"                             
[24] "BATCHNUMBER"                                       

Input Data has 24 rows and 562 columns.

[1] "Batch" "24"   
[1] "Last Follow UP"
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
        1224         1247           55         1495           61         1418 
TCGA-04-1341 TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 
          NA          563          361         1992         1918         1483 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1357 TCGA-04-1360 
         656         1946         1991         1499           NA           NA 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 
         989         1348         1024         2328         2174         2505 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1519 TCGA-04-1525 TCGA-04-1530 
        1720         1265          608           NA         1167         3622 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
         884         2561         1685         1487          848          871 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
        1966         1102          969         1451         1379          887 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
         288         1756          546         1081           NA           NA 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
          NA           NA           NA         1751         1882         1684 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 
         927          547          178           92          260         2967 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
         187          186         1069          137         3418         2163 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
        1919         1209          636          819          379         1652 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 
         788         2478          562         1011          982          356 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 
         118         1077         1089          460          604          189 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 
         748         1355         1204           83          377          945 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
         462          541         1678           75          340          346 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
         351         1036          981          944          651          256 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 
        1184         1117          873          923          595          265 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 
         237          247          252          249         1333         1073 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 
        1073          414         2096         3260         2780         2259 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
        2027         2141         1880         2068         2099         1319 
TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 
        1748         1708         1736          589         1441         1470 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
        1455         1367         1364         1128          842         1036 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 
         912          643          453          420          141          195 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 
         185          331          201          224          184          180 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
         208          143          128          162         1661         2648 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
        1877          894         2982          629          681         2154 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 
        2521         1595         2237         1161         1497          129 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
        1652         1144         1167          425          999          504 
TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
         128          134          145          126           78          118 
TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 
          94          433          372          261          328          266 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 
         191          701          789          797         2196          836 
TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
         772          580          507           89           81         1446 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
        1293         1233          468          816          965         1503 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
         268          885          574           68         1562         1658 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
          98          949         2089          139         1013         2616 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
        3953          130          194         1189         1018         1768 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
          16          759         3525         2661         2788         2342 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
        1516           84          143          137          232          597 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 
         354          663         1264          233          679         1645 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
        1933         1442          192          194          238          243 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 
         239           23          190          183          181          163 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 
         146          528          862          583          568         1324 
TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 
         260         2218          379         1373         3224          277 
TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
         104           36          675          820         1745         1955 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 
         493         1721         1249         1579         1259         1767 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
        2692         2148         1213          594         1341         1384 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
        1451          787          312          524         2742         2687 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 
        1470         1163          253          106          113          116 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
         133          343          175          167          298          689 
TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 
         919          499          336         2467          148         4623 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
        1364         1769         1059         3336          439         1641 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 
         562          857         1947         1353         1736         1100 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
          24           11         1446          962         2143         1356 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
          25         2049         1102          506         1007         1699 
TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
        1620           31          819          973         1553         1126 
TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 
          31         1064         1977         1124         1033           91 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 
         365           90          565          548          480           11 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 
         626          239            9         1732         1843         1081 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
        1558          454          760          549         2587          396 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
        1492           31         1157           92          365         1369 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
         608         1278           90          882          942          820 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
        2399         1360         1435         3095         1172           24 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
        1025          948         2077           16          514          567 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
        1815          555         1276          889         1053          517 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
        2606         2031         1914         1189          950          699 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 
         741          685          526          376          360          374 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 
         454          254          219          163         1053         2621 
TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
        1977         1900         1372          148         1285          360 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 
         349          297         1158         1579         1103           75 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 
         477            8         1462         1366         1058          185 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
        1114           36         1751          738          914         1484 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
        1386          918          571          683          204         1293 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
        1341           66          874          884          655          695 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
         686          260          914          783          847          737 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2533 TCGA-36-2534 
         751         1066         1004          897           NA          906 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
         788          763          724          657           68          638 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 
         557          624          431          184          491          349 
TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
         435          276          287          230          227          232 
TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 
          NA          731          346          643           53          679 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 
         881          762          761         5480           NA           NA 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
        3532           NA           NA           NA          164           NA 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 
         338          245          637          955          564          848 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
         132          966          866         1484         1364         1089 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 
          74         1024         1329           43          256          176 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
         347          396          276         1038          952         1126 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
        1292         1488         1721         2060         1321          479 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
        1161           60          168          441          547          121 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 
         931         1212          932           36         1398         1381 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
         146          145         1573         2182         1875         1776 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 
        1844         1992         1688          197         2337          629 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        1354         3824          676          193          945          261 
TCGA-72-4231 TCGA-72-4232 TCGA-72-4233 TCGA-72-4234 TCGA-72-4235 TCGA-72-4236 
          NA           NA           NA           NA           NA           NA 
TCGA-72-4237 TCGA-72-4238 TCGA-72-4240 TCGA-72-4241 
          NA           NA           NA           NA 
Variable 1:'AGE':	nDistinctValues=55,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=263,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=461,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=18,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'RADIATION.THERAPY':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=4,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'EXAMINATIONS.EXAMINATION.KARNOFSKYPERFORMANCESCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 13:'TUMOR.GRADE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'TUMOR.STAGE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'PATIENTTUMORRECURRENCESTATUS':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'DAYSTOTUMORRECURRENCE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 17:'CHEMOTHERAPY':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 18:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'DISTANT.METASTASIS':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 20:'LYMPH.NODE.METASTASIS':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 21:'COMPLETENESS.OF.RESECTION':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 22:'TUMOR.STAGECODE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 23:'NEOPLASM.DISEASESTAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 24:'BATCH.NUMBER':	nDistinctValues=14,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "PRIMARY.SITE.OF.DISEASE"               
[3] "KARNOFSKY.PERFORMANCE.SCORE"           
[4] "TUMOR.STAGE"                           
[5] "RADIATIONS.RADIATION.REGIMENINDICATION"
[6] "COMPLETENESS.OF.RESECTION"             
[1] "TUMOR.?STAGE" "4"           
[1] "stage2"
vv
  1   2   3   4 
  2   2 133  34 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 562 columns, 1 survival variables, and 6 non-survival variables.
AGE, nv=55, binary=FALSE, numeric=TRUE
PRIMARY.SITE.OF.DISEASE, nv=3, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=4, binary=FALSE, numeric=TRUE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE$',vnm)"
vv
  I  II III  IV 
  2   2 133  34 
[1] "table(vv)"
vv
I+II  III   IV 
   4  133   34 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
  2   2 133  34 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


I+II  III   IV 
   4  133   34 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
COMPLETENESS.OF.RESECTION, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1p gain
D1V1, survival
                   sevent
clus2                 0   1
  1P GAIN CNV        41  59
  1P GAIN WILD-TYPE 222 225
      1P GAIN CNV 1P GAIN WILD-TYPE 
              100               447 
      1P GAIN CNV 1P GAIN WILD-TYPE 
               59               225 
$`1P GAIN CNV`
TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1364 TCGA-04-1525 TCGA-04-1649 
       18.51        65.49        63.06        33.67        38.37        64.64 
TCGA-04-1655 TCGA-09-0365 TCGA-09-0366 TCGA-09-1670 TCGA-09-2045 TCGA-09-2048 
       45.34         9.47        57.73        17.98        35.15         4.50 
TCGA-09-2051 TCGA-13-0717 TCGA-13-0723 TCGA-13-0724 TCGA-13-0726 TCGA-13-0751 
       63.09        24.59        39.58         2.73        31.07        55.17 
TCGA-13-0760 TCGA-13-0888 TCGA-13-0893 TCGA-13-0911 TCGA-13-1410 TCGA-13-1496 
       11.54        70.39        43.36        27.68         4.70         4.24 
TCGA-13-1506 TCGA-13-1512 TCGA-13-2061 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
        4.41         3.09        10.78        23.05        25.94        26.20 
TCGA-23-1031 TCGA-23-1117 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2084 
       18.87        33.30        58.13         0.53       115.89        49.84 
TCGA-24-1104 TCGA-24-1417 TCGA-24-1431 TCGA-24-1436 TCGA-24-1466 TCGA-24-1471 
       63.55         7.82        19.17         8.55        45.14         1.18 
TCGA-24-1474 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1564 TCGA-24-1565 
       22.19        39.88        19.53        44.09        25.87        10.26 
TCGA-24-1842 TCGA-24-1845 TCGA-24-1924 TCGA-24-1930 TCGA-24-2026 TCGA-24-2029 
        8.32         3.81        30.21        81.11        34.82        14.43 
TCGA-24-2030 TCGA-24-2038 TCGA-24-2271 TCGA-24-2290 TCGA-25-1312 TCGA-25-1329 
       53.95        44.48        31.63        36.23         1.02         2.96 
TCGA-25-1627 TCGA-25-1633 TCGA-25-2392 TCGA-29-1701 TCGA-29-1707 TCGA-29-1764 
        0.36        60.59         1.02        16.90        41.95        62.93 
TCGA-29-1769 TCGA-29-1770 TCGA-29-1775 TCGA-29-1784 TCGA-29-2425 TCGA-29-2432 
       22.98        24.36        12.36         5.36        65.00        11.84 
TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1862 TCGA-30-1867 
       38.07        51.91         2.47        15.68         6.08         1.18 
TCGA-31-1959 TCGA-36-1577 TCGA-36-2529 TCGA-36-2551 TCGA-57-1582 TCGA-59-2351 
        2.17        25.74        35.05        16.14        24.03       116.12 
TCGA-59-2355 TCGA-61-1730 TCGA-61-1733 TCGA-61-1740 TCGA-61-1899 TCGA-61-1911 
        2.14         4.34        31.76         2.43         8.42        42.48 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2088 TCGA-61-2092 TCGA-61-2097 TCGA-61-2102 
       30.61        39.85         4.77        51.72        60.62         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2111 TCGA-61-2614 
       76.83        20.68       125.72         8.58 

$`1P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1343 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 
       11.87        48.76        21.57        63.98        65.46        49.28 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 
       32.52        44.32        76.54        71.47        82.36        56.55 
TCGA-04-1516 TCGA-04-1517 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 
       41.59        19.99       119.08        29.06        84.20        55.40 
TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 
       48.89        27.88        28.64        36.23        31.86        47.70 
TCGA-09-0364 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       29.16        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       74.89        41.59        57.57        61.87        55.36        30.48 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
        5.85         3.02         8.55        97.55         6.15         6.12 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 
      112.37        71.11        39.75        20.91        26.93        12.46 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 
       54.31        25.91        81.47        18.48        33.24        32.28 
TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 
       11.70         3.88        35.41        35.80        15.12        19.86 
TCGA-13-0714 TCGA-13-0720 TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 TCGA-13-0755 
        6.21        44.55        12.39        15.19        17.79         2.47 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 
       11.18        11.38        34.06        32.25        31.04        21.40 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 
        8.42        38.93        36.72        28.70        30.35        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 
        8.71         7.79         8.12         8.28         8.19        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 
       35.28        35.28        13.61        68.91       107.18        91.40 
TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 
       74.27        66.64        61.81        67.99        69.01        57.47 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 
       56.15        57.07        19.36        47.38        48.33        47.84 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       44.94        44.84        37.08        34.06        29.98        21.14 
TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       14.89        13.81         4.64         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1411 
        6.61         7.36         6.05         5.92         6.84         4.21 
TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 
        5.33        54.61        87.06        61.71        29.39        98.04 
TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 
       20.68        22.39        70.82        82.88        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       38.17        49.22        54.31        37.61        38.37        13.97 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 
       32.84        16.57         4.21         4.77         4.14         2.56 
TCGA-13-1511 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2065 TCGA-13-2071 
        3.88        14.24        12.23         8.58         8.75         6.28 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 
       72.20        27.48        25.38        19.07        16.67         2.93 
TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 
        2.66        47.54        42.51        40.54        15.39        26.83 
TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1032 TCGA-23-1109 
       31.73        49.41         8.81        29.10         2.24        51.35 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1118 
       54.51         3.22        31.20        68.68         4.57        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 
      129.96         4.27         6.38        39.09        33.47        24.95 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
       87.48        91.66        77.00         2.76         4.70         4.50 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1418 
       22.32        54.08        47.41         6.31         6.38         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 
        7.86         0.76         6.25         6.02         5.95         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 
        4.80        17.36        28.34        18.67        43.53        72.92 
TCGA-24-1464 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1544 TCGA-24-1545 
       12.46       105.99         9.11         3.42        26.96        57.37 
TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
       64.27        16.21        56.58        41.06        51.91        41.39 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1562 TCGA-24-1563 TCGA-24-1567 
       58.09        88.50        70.62        45.50        47.70        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 
       90.15        88.34        48.33        38.24         3.48         3.72 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
        4.37        11.28         5.75         5.49         9.80        22.65 
TCGA-24-1927 TCGA-24-1928 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       16.41        11.05         4.87       151.99        44.84        58.16 
TCGA-24-2027 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2254 TCGA-24-2260 
      109.68        18.48        28.18        64.01        57.07        36.16 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
        0.79         0.36        47.54        70.45        44.58         0.82 
TCGA-24-2289 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 
       67.36        16.64        33.11        55.86        53.26        26.93 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 
       31.99        51.06        37.02         1.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1623 TCGA-25-1625 
       36.95        33.96         2.99        12.00        18.58        18.02 
TCGA-25-1626 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1634 
       15.78        20.58         7.86         0.30        56.94        35.54 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
       51.22        14.93        24.99        18.05        85.05        13.02 
TCGA-25-2391 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
       49.05        38.04         3.02        12.00        45.01        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 
       42.02         2.96        29.00        30.97        26.96        78.87 
TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 
       44.71        47.18       101.75        38.53         0.79        33.70 
TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 
       31.17        68.28         0.53        18.64        59.67        18.25 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1766 
       29.23        34.62        17.00        85.68        66.77        39.09 
TCGA-29-1768 TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       31.23        22.52        17.29        11.84        12.30        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 TCGA-29-2428 
        8.35         7.20        34.62        86.17        62.47        45.11 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2434 TCGA-29-2436 TCGA-30-1853 TCGA-30-1857 
        4.87        42.25        11.47         9.76        36.26         0.26 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 TCGA-30-1880 TCGA-30-1887 
       48.07        44.91        34.78        36.62        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
        6.71        42.51        44.09        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1578 TCGA-36-1580 
       22.85        22.55         8.55        30.05        27.85        24.23 
TCGA-36-1581 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       24.69        33.01        29.49        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       23.80        21.60         2.24        20.98        18.31        20.52 
TCGA-36-2548 TCGA-36-2549 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 
       14.17         6.05        11.47        14.30         9.07         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1583 TCGA-57-1584 
        7.56         7.46         7.63         1.48        11.38        21.14 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 
        1.74        22.32        28.96        25.05        25.02       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2352 TCGA-59-2354 TCGA-59-2363 TCGA-59-2372 
       80.12        22.32         9.40        34.39         5.39        44.78 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 
       11.11         8.05        20.94        31.40        18.54        27.88 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1741 TCGA-61-1743 
       28.47        48.79        44.84        35.80        33.67        43.69 
TCGA-61-1895 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
        1.41         5.79        11.41        13.02         9.07        34.13 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 
       31.30        37.02        48.92        56.58        67.73        43.43 
TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 
       15.75        38.17         1.97         5.52        14.50        17.98 
TCGA-61-2003 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
        3.98        30.64         1.18        45.96        45.40         4.80 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 TCGA-61-2110 
       71.74        61.64        58.39        65.49        55.50        44.52 
TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 
       22.22         6.35        31.07 

      1P GAIN CNV 1P GAIN WILD-TYPE 
             0.36              0.26 
      1P GAIN CNV 1P GAIN WILD-TYPE 
           125.72            180.16 
      1P GAIN CNV 1P GAIN WILD-TYPE 
           25.165            28.730 
[1] "0.4 - 125.7 (25.2)" "0.3 - 180.2 (28.7)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "1P GAIN CNV" "1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "1P GAIN CNV" "1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "1P GAIN CNV" "1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
      "1P GAIN CNV" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "1P GAIN CNV" "1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "1P GAIN CNV" "1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "1P GAIN CNV" "1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
      "1P GAIN CNV" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "1P GAIN CNV" "1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "1P GAIN CNV" "1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "1P GAIN CNV" "1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
      "1P GAIN CNV" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
[1] "hr=" "1.3"
D1V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  1P GAIN CNV             1    99                1
  1P GAIN WILD-TYPE       1   449                1
D1V3, multiclass
                  clus
vv                 1P GAIN CNV 1P GAIN WILD-TYPE
  OMENTUM                    1                 1
  OVARY                     99               449
  PERITONEUM OVARY           1                 1
D1V4, continuous
                   vv
clus                I+II III  IV
  1P GAIN CNV          1  16   9
  1P GAIN WILD-TYPE    3 117  25
D1V5, multiclass
      clus
vv     1P GAIN CNV 1P GAIN WILD-TYPE
  I+II           1                 3
  III           16               117
  IV             9                25
D1V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN CNV          2  102
  1P GAIN WILD-TYPE    1  457
     clus
vv    1P GAIN CNV 1P GAIN WILD-TYPE
  NO            2                 1
  YES         102               457
                   vv
clus                R0 R1 R2
  1P GAIN CNV        0  6  0
  1P GAIN WILD-TYPE 14 20  2
D1V7, multiclass
    clus
vv   1P GAIN CNV 1P GAIN WILD-TYPE
  R0           0                14
  R1           6                20
  R2           0                 2

Clustering(2) Variable = 1q gain
D2V1, survival
                   sevent
clus2                 0   1
  1Q GAIN CNV        68  85
  1Q GAIN WILD-TYPE 195 199
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
              153               394 
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
               85               199 
$`1Q GAIN CNV`
TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1356 TCGA-04-1364 TCGA-04-1516 
       18.51        65.49        63.06        49.28        33.67        41.59 
TCGA-04-1525 TCGA-04-1542 TCGA-04-1649 TCGA-04-1655 TCGA-09-0365 TCGA-09-0366 
       38.37        84.20        64.64        45.34         9.47        57.73 
TCGA-09-1661 TCGA-09-1668 TCGA-09-1670 TCGA-09-1672 TCGA-09-1674 TCGA-09-2045 
       38.43        55.36        17.98         5.85         8.55        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2051 TCGA-09-2056 TCGA-10-0933 TCGA-10-0935 
        4.50       112.37        63.09        12.46        11.70        35.41 
TCGA-10-0938 TCGA-13-0717 TCGA-13-0723 TCGA-13-0724 TCGA-13-0727 TCGA-13-0751 
       19.86        24.59        39.58         2.73        15.19        55.17 
TCGA-13-0760 TCGA-13-0762 TCGA-13-0795 TCGA-13-0799 TCGA-13-0800 TCGA-13-0888 
       11.54        32.25        19.56         7.79         8.12        70.39 
TCGA-13-0901 TCGA-13-0911 TCGA-13-0921 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
       19.36        27.68         4.64         5.92         6.84         4.70 
TCGA-13-1481 TCGA-13-1484 TCGA-13-1495 TCGA-13-1506 TCGA-13-1512 TCGA-20-0987 
       87.06        98.04        49.22         4.41         3.09        23.05 
TCGA-20-0991 TCGA-20-1683 TCGA-20-1684 TCGA-23-1031 TCGA-23-1114 TCGA-23-1124 
       26.20        25.38        19.07        18.87        68.68        58.13 
TCGA-23-1809 TCGA-23-2077 TCGA-24-1104 TCGA-24-1413 TCGA-24-1422 TCGA-24-1423 
        0.53       115.89        63.55         6.31         0.76         6.25 
TCGA-24-1431 TCGA-24-1436 TCGA-24-1466 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 
       19.17         8.55        45.14         1.18        22.19        26.96 
TCGA-24-1553 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1564 TCGA-24-1565 
       58.09        39.88        19.53        44.09        25.87        10.26 
TCGA-24-1604 TCGA-24-1842 TCGA-24-1845 TCGA-24-1924 TCGA-24-1930 TCGA-24-2026 
       88.34         8.32         3.81        30.21        81.11        34.82 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2038 TCGA-24-2271 TCGA-24-2290 TCGA-25-1312 
       14.43        53.95        44.48        31.63        36.23         1.02 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       37.02         1.02        34.98        65.00        36.95        33.96 
TCGA-25-1329 TCGA-25-1627 TCGA-25-1633 TCGA-25-1634 TCGA-25-1871 TCGA-25-2392 
        2.96         0.36        60.59        35.54        24.99         1.02 
TCGA-25-2396 TCGA-29-1688 TCGA-29-1690 TCGA-29-1695 TCGA-29-1701 TCGA-29-1702 
        3.02        78.87        44.71         0.79        16.90        18.64 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1764 TCGA-29-1766 TCGA-29-1769 
       41.95        29.23        34.62        62.93        39.09        22.98 
TCGA-29-1770 TCGA-29-1774 TCGA-29-1775 TCGA-29-1784 TCGA-29-2425 TCGA-29-2432 
       24.36        17.29        12.36         5.36        65.00        11.84 
TCGA-29-2434 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1862 
       11.47        38.07        51.91         2.47        15.68         6.08 
TCGA-30-1867 TCGA-31-1959 TCGA-36-1569 TCGA-36-1571 TCGA-36-1581 TCGA-36-2529 
        1.18         2.17        29.06        22.85        24.69        35.05 
TCGA-36-2551 TCGA-36-2552 TCGA-57-1582 TCGA-57-1586 TCGA-59-2351 TCGA-59-2355 
       16.14        11.47        24.03        22.32       116.12         2.14 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1740 TCGA-61-1743 TCGA-61-1899 
        4.34        31.76        28.47         2.43        43.69         8.42 
TCGA-61-1904 TCGA-61-1911 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2088 
        9.07        42.48         3.98        30.61        39.85         4.77 
TCGA-61-2092 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 
       51.72        60.62        65.49        55.50         6.48        76.83 
TCGA-61-2109 TCGA-61-2111 TCGA-61-2614 
       20.68       125.72         8.58 

$`1Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1343 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1361 
       11.87        48.76        21.57        63.98        65.46        32.52 
TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 
       44.32        76.54        71.47        82.36        56.55        19.99 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
      119.08        29.06        55.40        48.89        27.88        28.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-09-0364 TCGA-09-0367 TCGA-09-0369 
       36.23        31.86        47.70        29.16        17.95        35.54 
TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 
        9.96        89.33        74.89        41.59        57.57        61.87 
TCGA-09-1669 TCGA-09-1673 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2050 
       30.48         3.02        97.55         6.15         6.12        71.11 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       39.75        20.91        26.93        54.31        25.91        81.47 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0934 TCGA-10-0936 TCGA-10-0937 
       18.48        33.24        32.28         3.88        35.80        15.12 
TCGA-13-0714 TCGA-13-0720 TCGA-13-0725 TCGA-13-0726 TCGA-13-0730 TCGA-13-0755 
        6.21        44.55        12.39        31.07        17.79         2.47 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0761 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.18        11.38        34.06        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 TCGA-13-0801 
       38.93        36.72        28.70        30.35         8.71         8.28 
TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.19        43.82        35.28        35.28        13.61        68.91 
TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 
      107.18        91.40        74.27        66.64        61.81        67.99 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0903 
       69.01        43.36        57.47        56.15        57.07        47.38 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0912 
       48.33        47.84        44.94        44.84        37.08        34.06 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 
       29.98        21.14        14.89        13.81         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1411 TCGA-13-1412 
       10.88         6.61         7.36         6.05         4.21         5.33 
TCGA-13-1477 TCGA-13-1482 TCGA-13-1483 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
       54.61        61.71        29.39        20.68        22.39        70.82 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1496 TCGA-13-1497 
       82.88        52.44        73.55        38.17         4.24        54.31 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       37.61        38.37        13.97        32.84        16.57         4.21 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2057 TCGA-13-2059 
        4.77         4.14         2.56         3.88        14.24        12.23 
TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0990 TCGA-20-0996 
        8.58        10.78         8.75         6.28        25.94        72.20 
TCGA-20-1682 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 
       27.48        16.67         2.93         2.66        47.54        42.51 
TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 
       40.54        15.39        26.83        31.73        49.41         8.81 
TCGA-23-1030 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 
       29.10         2.24        51.35        54.51         3.22        31.20 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 
        4.57        33.30        86.01       129.96         4.27         6.38 
TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
       39.09        33.47        24.95        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
       49.84         2.76         4.70         4.50         7.63        19.63 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 
       11.64        21.80        41.56         7.66        22.32        54.08 
TCGA-24-1105 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1424 
       47.41         6.38         7.82         7.99         7.86         6.02 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1434 
        5.95         5.36         4.80        17.36        28.34        18.67 
TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
       43.53        72.92        12.46       105.99         9.11         3.42 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       57.37        64.27        16.21        56.58        41.06        51.91 
TCGA-24-1552 TCGA-24-1555 TCGA-24-1556 TCGA-24-1562 TCGA-24-1563 TCGA-24-1567 
       41.39        88.50        70.62        45.50        47.70        17.23 
TCGA-24-1603 TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 
       90.15        48.33        38.24         3.48         3.72         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 
       11.28         5.75         5.49         9.80        22.65        16.41 
TCGA-24-1928 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 
       11.05         4.87       151.99        44.84        58.16       109.68 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 
       18.48        28.18        64.01        57.07        36.16         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
        0.36        47.54        70.45        44.58         0.82        67.36 
TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 
       16.64        33.11        55.86        53.26        26.93        31.99 
TCGA-25-1315 TCGA-25-1322 TCGA-25-1323 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
       51.06         2.99        12.00        18.58        18.02        15.78 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1635 TCGA-25-1870 
       20.58         7.86         0.30        56.94        51.22        14.93 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 TCGA-25-2397 
       18.05        85.05        13.02        49.05        38.04        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
       45.01        19.99        42.02         2.96        29.00        30.97 
TCGA-25-2409 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 
       26.96        47.18       101.75        38.53        33.70        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1703 TCGA-29-1705 TCGA-29-1761 TCGA-29-1762 
       68.28         0.53        59.67        18.25        17.00        85.68 
TCGA-29-1763 TCGA-29-1768 TCGA-29-1771 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       66.77        31.23        22.52        11.84        12.30        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 TCGA-29-2428 
        8.35         7.20        34.62        86.17        62.47        45.11 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2436 TCGA-30-1853 TCGA-30-1857 TCGA-30-1859 
        4.87        42.25         9.76        36.26         0.26        48.07 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
       44.91        34.78        36.62        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 
       48.79        45.57        30.18        18.77        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1570 TCGA-36-1574 TCGA-36-1575 
       42.51        44.09        28.73        21.53        22.55         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-2530 TCGA-36-2532 
       30.05        25.74        27.85        24.23        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.79        25.91        25.08        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-42-2582 
       20.98        18.31        20.52        14.17         6.05        14.30 
TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 
        9.07         9.44         7.56         7.46         7.63         1.48 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 
       11.38        21.14         1.74        28.96        25.05        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2352 TCGA-59-2354 TCGA-59-2363 
      180.16        80.12        22.32         9.40        34.39         5.39 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 
       44.78        11.11         8.05        20.94        31.40        18.54 
TCGA-61-1728 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1741 TCGA-61-1895 
       27.88        48.79        44.84        35.80        33.67         1.41 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
        5.79        11.41        13.02        34.13        31.30        37.02 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 
       48.92        56.58        67.73        43.43        15.75        38.17 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2012 TCGA-61-2016 
        1.97         5.52        14.50        17.98        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
       45.96        45.40         4.80        71.74        61.64        58.39 
TCGA-61-2110 TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 
       44.52        22.22         6.35        31.07 

      1Q GAIN CNV 1Q GAIN WILD-TYPE 
             0.36              0.26 
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
           125.72            180.16 
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
            24.99             28.98 
[1] "0.4 - 125.7 (25.0)" "0.3 - 180.2 (29.0)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
[1] "hr=" "1.1"
D2V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  1Q GAIN CNV             1   151                2
  1Q GAIN WILD-TYPE       1   397                0
D2V3, multiclass
                  clus
vv                 1Q GAIN CNV 1Q GAIN WILD-TYPE
  OMENTUM                    1                 1
  OVARY                    151               397
  PERITONEUM OVARY           2                 0
D2V4, continuous
                   vv
clus                I+II III  IV
  1Q GAIN CNV          2  23   8
  1Q GAIN WILD-TYPE    2 110  26
D2V5, multiclass
      clus
vv     1Q GAIN CNV 1Q GAIN WILD-TYPE
  I+II           2                 2
  III           23               110
  IV             8                26
D2V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN CNV          1  159
  1Q GAIN WILD-TYPE    2  400
     clus
vv    1Q GAIN CNV 1Q GAIN WILD-TYPE
  NO            1                 2
  YES         159               400
                   vv
clus                R0 R1 R2
  1Q GAIN CNV        3  6  0
  1Q GAIN WILD-TYPE 11 20  2
D2V7, multiclass
    clus
vv   1Q GAIN CNV 1Q GAIN WILD-TYPE
  R0           3                11
  R1           6                20
  R2           0                 2

Clustering(3) Variable = 2p gain
D3V1, survival
                   sevent
clus2                 0   1
  2P GAIN CNV        55  69
  2P GAIN WILD-TYPE 208 215
      2P GAIN CNV 2P GAIN WILD-TYPE 
              124               423 
      2P GAIN CNV 2P GAIN WILD-TYPE 
               69               215 
$`2P GAIN CNV`
TCGA-04-1342 TCGA-04-1347 TCGA-04-1350 TCGA-04-1356 TCGA-04-1364 TCGA-04-1371 
       18.51        63.06        63.98        49.28        33.67        82.36 
TCGA-04-1542 TCGA-04-1646 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-1661 
       84.20        27.88        45.34        29.16         9.47        38.43 
TCGA-09-1672 TCGA-09-1674 TCGA-09-2043 TCGA-09-2048 TCGA-10-0927 TCGA-10-0930 
        5.85         8.55         6.15         4.50        81.47        33.24 
TCGA-10-0933 TCGA-10-0935 TCGA-13-0724 TCGA-13-0730 TCGA-13-0800 TCGA-13-0802 
       11.70        35.41         2.73        17.79         8.12         8.19 
TCGA-13-0888 TCGA-13-0893 TCGA-13-0901 TCGA-13-0906 TCGA-13-0920 TCGA-13-0921 
       70.39        43.36        19.36        44.94        13.81         4.64 
TCGA-13-1407 TCGA-13-1409 TCGA-13-1410 TCGA-13-1412 TCGA-13-1501 TCGA-13-1505 
        6.05         6.84         4.70         5.33        32.84         4.21 
TCGA-13-2057 TCGA-13-2060 TCGA-20-1686 TCGA-23-1021 TCGA-23-1024 TCGA-23-1114 
       14.24         8.58         2.93        47.54        15.39        68.68 
TCGA-23-1121 TCGA-23-1809 TCGA-23-2078 TCGA-23-2643 TCGA-24-0970 TCGA-24-1422 
        6.38         0.53        87.48         4.70        11.64         0.76 
TCGA-24-1424 TCGA-24-1436 TCGA-24-1467 TCGA-24-1469 TCGA-24-1474 TCGA-24-1544 
        6.02         8.55       105.99         9.11        22.19        26.96 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1558 TCGA-24-1560 TCGA-24-1604 TCGA-24-1616 
       41.39        58.09        19.53        44.09        88.34        38.24 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1850 TCGA-24-2019 TCGA-24-2029 TCGA-24-2033 
        3.72         3.81         5.49         4.87        14.43        18.48 
TCGA-24-2261 TCGA-24-2289 TCGA-24-2295 TCGA-25-1312 TCGA-25-1315 TCGA-25-1317 
        0.79        67.36        33.11         1.02        51.06         1.02 
TCGA-25-1319 TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 TCGA-25-1628 TCGA-25-1634 
       65.00         2.96        18.58        15.78        20.58        35.54 
TCGA-25-1870 TCGA-25-1877 TCGA-25-2391 TCGA-25-2393 TCGA-25-2398 TCGA-25-2400 
       14.93        18.05        49.05        38.04        45.01        42.02 
TCGA-25-2409 TCGA-29-1695 TCGA-29-1698 TCGA-29-1701 TCGA-29-1702 TCGA-29-1764 
       26.96         0.79        68.28        16.90        18.64        62.93 
TCGA-29-1774 TCGA-29-1775 TCGA-29-1778 TCGA-29-2425 TCGA-29-2429 TCGA-30-1714 
       17.29        12.36        14.93        65.00         4.87        38.07 
TCGA-30-1859 TCGA-30-1862 TCGA-31-1959 TCGA-36-1571 TCGA-36-1575 TCGA-36-1578 
       48.07         6.08         2.17        22.85         8.55        27.85 
TCGA-36-2552 TCGA-42-2589 TCGA-57-1583 TCGA-57-1585 TCGA-57-1586 TCGA-57-1994 
       11.47         7.56        11.38         1.74        22.32        25.02 
TCGA-59-2348 TCGA-59-2372 TCGA-61-1730 TCGA-61-1733 TCGA-61-1899 TCGA-61-1900 
      180.16        44.78         4.34        31.76         8.42         5.79 
TCGA-61-2000 TCGA-61-2009 TCGA-61-2018 TCGA-61-2088 TCGA-61-2097 TCGA-61-2098 
       14.50        39.85        45.40         4.77        60.62        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2612 TCGA-61-2614 
       55.50         6.48         6.35         8.58 

$`2P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1348 TCGA-04-1349 TCGA-04-1351 TCGA-04-1361 
       11.87        65.49        48.76        21.57        65.46        32.52 
TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 
       44.32        76.54        71.47        56.55        41.59        19.99 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 
       38.37       119.08        29.06        55.40        48.89        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-09-0366 TCGA-09-0367 
       64.64        36.23        31.86        47.70        57.73        17.95 
TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 
       35.54         9.96        89.33        74.89        41.59        57.57 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 TCGA-09-1675 
       61.87        55.36        30.48        17.98         3.02        97.55 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 
        6.12        35.15       112.37        71.11        63.09        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0928 
       20.91        26.93        12.46        54.31        25.91        18.48 
TCGA-10-0931 TCGA-10-0934 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 
       32.28         3.88        35.80        15.12        19.86         6.21 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 
       24.59        44.55        39.58        12.39        31.07        15.19 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       55.17         2.47        11.18        11.38        11.54        34.06 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       32.25        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 
       28.70        30.35        19.56         8.71         7.79         8.28 
TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 
       43.82        35.28        35.28        13.61        68.91       107.18 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
       91.40        74.27        66.64        61.81        67.99        69.01 
TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 
       57.47        56.15        57.07        47.38        48.33        47.84 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       44.84        37.08        27.68        34.06        29.98        21.14 
TCGA-13-0919 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 
       14.89         6.41         6.08        10.88         6.61         7.36 
TCGA-13-1408 TCGA-13-1411 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        5.92         4.21        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 
       98.04        20.68        22.39        70.82        82.88        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 
       73.55        38.17        49.22         4.24        54.31        37.61 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1504 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       38.37        13.97        16.57         4.41         4.77         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 
        2.56         3.88         3.09        12.23        10.78         8.75 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 
        6.28        23.05        25.94        26.20        72.20        27.48 
TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 
       25.38        19.07        16.67         2.66        42.51        40.54 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       26.83        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 
        2.24        51.35        54.51         3.22        31.20         4.57 
TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1122 TCGA-23-1123 
       33.30        86.01       129.96         4.27        39.09        33.47 
TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 
       58.13        24.95       115.89        91.66        77.00        49.84 
TCGA-23-2641 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0975 TCGA-24-0979 
        2.76         4.50         7.63        19.63        21.80        41.56 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
        7.66        22.32        54.08        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1423 TCGA-24-1425 
        6.38         7.82         7.99         7.86         6.25         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 
        5.36         4.80        17.36        28.34        19.17        18.67 
TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1470 TCGA-24-1471 
       43.53        72.92        12.46        45.14         3.42         1.18 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       57.37        64.27        16.21        56.58        41.06        51.91 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 
       88.50        70.62        39.88        45.50        47.70        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 TCGA-24-1842 TCGA-24-1843 
       10.26        17.23        90.15        48.33         8.32         3.48 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 
        4.37        11.28         5.75         9.80        22.65        30.21 
TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       16.41        11.05        81.11       151.99        44.84        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
       34.82       109.68        53.95        28.18        64.01        44.48 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 
       57.07        36.16         0.36        47.54        31.63        70.45 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 
       44.58         0.82        36.23        16.64        55.86        53.26 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1316 TCGA-25-1318 TCGA-25-1320 TCGA-25-1321 
       26.93        31.99        37.02        34.98        36.95        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1625 TCGA-25-1627 TCGA-25-1630 TCGA-25-1631 
        2.99        12.00        18.02         0.36         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1635 TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 
       56.94        60.59        51.22        24.99        85.05        13.02 
TCGA-25-2392 TCGA-25-2396 TCGA-25-2397 TCGA-25-2399 TCGA-25-2401 TCGA-25-2404 
        1.02         3.02        12.00        19.99         2.96        29.00 
TCGA-25-2408 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 
       30.97        78.87        44.71        47.18       101.75        38.53 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1699 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
       33.70        31.17         0.53        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1766 
       29.23        34.62        17.00        85.68        66.77        39.09 
TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1776 TCGA-29-1777 
       31.23        22.98        24.36        22.52        11.84        12.30 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 
        8.35         7.20         5.36        34.62        86.17        62.47 
TCGA-29-2428 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1718 
       45.11        42.25        11.84        11.47         9.76        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1860 TCGA-30-1861 
       36.26         2.47        15.68         0.26        44.91        34.78 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
       36.62         1.18        57.57        24.26        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       45.57        30.18        18.77        22.45         6.71        42.51 
TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1574 TCGA-36-1576 
       44.09        28.73        29.06        21.53        22.55        30.05 
TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
       25.74        24.23        24.69        35.05        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.79        25.91        25.08        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 
       20.98        18.31        20.52        14.17         6.05        16.14 
TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 
       14.30         9.07         9.44         7.46         7.63         1.48 
TCGA-57-1582 TCGA-57-1584 TCGA-57-1992 TCGA-57-1993 TCGA-59-2349 TCGA-59-2350 
       24.03        21.14        28.96        25.05        80.12        22.32 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 
      116.12         9.40        34.39         2.14         5.39        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1734 
        8.05        20.94        31.40        18.54        27.88        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 
       48.79        44.84        35.80         2.43        33.67        43.69 
TCGA-61-1895 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 
        1.41        11.41        13.02         9.07        34.13        31.30 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 
       37.02        42.48        48.92        56.58        67.73        43.43 
TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2002 TCGA-61-2003 
       15.75        38.17         1.97         5.52        17.98         3.98 
TCGA-61-2008 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2087 TCGA-61-2092 
       30.61        30.64         1.18        45.96         4.80        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       71.74        61.64        58.39        76.83        20.68        44.52 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2613 
      125.72        22.22        31.07 

      2P GAIN CNV 2P GAIN WILD-TYPE 
             0.53              0.26 
      2P GAIN CNV 2P GAIN WILD-TYPE 
           180.16            151.99 
      2P GAIN CNV 2P GAIN WILD-TYPE 
           18.265            29.980 
[1] "0.5 - 180.2 (18.3)" "0.3 - 152.0 (30.0)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "2P GAIN CNV"       "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
      "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "2P GAIN CNV"       "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "2P GAIN CNV"       "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
      "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "2P GAIN CNV"       "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "2P GAIN CNV"       "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
      "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "2P GAIN CNV"       "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
[1] "hr=" "1.3"
D3V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  2P GAIN CNV             0   124                0
  2P GAIN WILD-TYPE       2   424                2
D3V3, multiclass
                  clus
vv                 2P GAIN CNV 2P GAIN WILD-TYPE
  OMENTUM                    0                 2
  OVARY                    124               424
  PERITONEUM OVARY           0                 2
D3V4, continuous
                   vv
clus                I+II III  IV
  2P GAIN CNV          0  18   7
  2P GAIN WILD-TYPE    4 115  27
D3V5, multiclass
      clus
vv     2P GAIN CNV 2P GAIN WILD-TYPE
  I+II           0                 4
  III           18               115
  IV             7                27
D3V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN CNV          1  127
  2P GAIN WILD-TYPE    2  432
     clus
vv    2P GAIN CNV 2P GAIN WILD-TYPE
  NO            1                 2
  YES         127               432
                   vv
clus                R0 R1 R2
  2P GAIN CNV        3  5  0
  2P GAIN WILD-TYPE 11 21  2
D3V7, multiclass
    clus
vv   2P GAIN CNV 2P GAIN WILD-TYPE
  R0           3                11
  R1           5                21
  R2           0                 2

Clustering(4) Variable = 2q gain
D4V1, survival
                   sevent
clus2                 0   1
  2Q GAIN CNV        42  56
  2Q GAIN WILD-TYPE 221 228
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
               98               449 
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
               56               228 
$`2Q GAIN CNV`
TCGA-04-1347 TCGA-04-1350 TCGA-04-1356 TCGA-04-1364 TCGA-04-1516 TCGA-04-1542 
       63.06        63.98        49.28        33.67        41.59        84.20 
TCGA-04-1646 TCGA-04-1649 TCGA-04-1655 TCGA-09-0365 TCGA-09-1661 TCGA-09-1672 
       27.88        64.64        45.34         9.47        38.43         5.85 
TCGA-09-1674 TCGA-09-2043 TCGA-09-2048 TCGA-10-0927 TCGA-10-0930 TCGA-10-0933 
        8.55         6.15         4.50        81.47        33.24        11.70 
TCGA-10-0935 TCGA-13-0724 TCGA-13-0730 TCGA-13-0888 TCGA-13-0893 TCGA-13-0901 
       35.41         2.73        17.79        70.39        43.36        19.36 
TCGA-13-0906 TCGA-13-0920 TCGA-13-1407 TCGA-13-1409 TCGA-13-1410 TCGA-13-1412 
       44.94        13.81         6.05         6.84         4.70         5.33 
TCGA-13-1496 TCGA-13-1501 TCGA-13-1505 TCGA-13-2057 TCGA-13-2060 TCGA-23-1021 
        4.24        32.84         4.21        14.24         8.58        47.54 
TCGA-23-1024 TCGA-23-1111 TCGA-23-1114 TCGA-23-1121 TCGA-23-1809 TCGA-23-2643 
       15.39         3.22        68.68         6.38         0.53         4.70 
TCGA-24-1422 TCGA-24-1424 TCGA-24-1430 TCGA-24-1436 TCGA-24-1467 TCGA-24-1469 
        0.76         6.02        28.34         8.55       105.99         9.11 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1553 TCGA-24-1558 TCGA-24-1560 TCGA-24-1604 
       22.19        26.96        58.09        19.53        44.09        88.34 
TCGA-24-1616 TCGA-24-1844 TCGA-24-2033 TCGA-24-2261 TCGA-24-2289 TCGA-24-2295 
       38.24         3.72        18.48         0.79        67.36        33.11 
TCGA-25-1317 TCGA-25-1319 TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 TCGA-25-1634 
        1.02        65.00         2.96        18.58        15.78        35.54 
TCGA-25-1870 TCGA-25-1877 TCGA-29-1695 TCGA-29-1696 TCGA-29-1698 TCGA-29-1764 
       14.93        18.05         0.79        33.70        68.28        62.93 
TCGA-29-1775 TCGA-29-2425 TCGA-29-2429 TCGA-30-1714 TCGA-30-1859 TCGA-30-1862 
       12.36        65.00         4.87        38.07        48.07         6.08 
TCGA-31-1959 TCGA-36-1578 TCGA-36-2552 TCGA-57-1583 TCGA-57-1585 TCGA-57-1586 
        2.17        27.85        11.47        11.38         1.74        22.32 
TCGA-57-1994 TCGA-59-2348 TCGA-61-1730 TCGA-61-1743 TCGA-61-1899 TCGA-61-2012 
       25.02       180.16         4.34        43.69         8.42        30.64 
TCGA-61-2018 TCGA-61-2088 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       45.40         4.77        60.62        65.49        55.50         6.48 
TCGA-61-2612 TCGA-61-2614 
        6.35         8.58 

$`2Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1348 TCGA-04-1349 TCGA-04-1351 
       18.51        11.87        65.49        48.76        21.57        65.46 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 
       32.52        44.32        76.54        71.47        82.36        56.55 
TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 
       19.99        38.37       119.08        29.06        55.40        48.89 
TCGA-04-1648 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-09-0364 TCGA-09-0366 
       28.64        36.23        31.86        47.70        29.16        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 
       17.95        35.54         9.96        89.33        74.89        41.59 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 
       57.57        61.87        55.36        30.48        17.98         3.02 
TCGA-09-1675 TCGA-09-2044 TCGA-09-2045 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
       97.55         6.12        35.15       112.37        71.11        63.09 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       39.75        20.91        26.93        12.46        54.31        25.91 
TCGA-10-0928 TCGA-10-0931 TCGA-10-0934 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 
       18.48        32.28         3.88        35.80        15.12        19.86 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0725 TCGA-13-0726 
        6.21        24.59        44.55        39.58        12.39        31.07 
TCGA-13-0727 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 
       15.19        55.17         2.47        11.18        11.38        11.54 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       34.06        32.25        31.04        21.40         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       36.72        28.70        30.35        19.56         8.71         7.79 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        8.12         8.28         8.19        43.82        35.28        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       13.61        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       61.81        67.99        69.01        57.47        56.15        57.07 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       47.38        48.33        47.84        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0921 TCGA-13-0923 
       34.06        29.98        21.14        14.89         4.64         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 TCGA-13-1411 
        6.08        10.88         6.61         7.36         5.92         4.21 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
       54.61        87.06        61.71        29.39        98.04        20.68 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 
       22.39        70.82        82.88        52.44        73.55        38.17 
TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1504 
       49.22        54.31        37.61        38.37        13.97        16.57 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
        4.41         4.77         4.14         2.56         3.88         3.09 
TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 
       12.23        10.78         8.75         6.28        23.05        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 
       26.20        72.20        27.48        25.38        19.07        16.67 
TCGA-20-1686 TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 
        2.93         2.66        42.51        40.54        26.83        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 
       49.41         8.81        29.10        18.87         2.24        51.35 
TCGA-23-1110 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
       54.51        31.20         4.57        33.30        86.01       129.96 
TCGA-23-1120 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 
        4.27        39.09        33.47        58.13        24.95       115.89 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2645 
       87.48        91.66        77.00        49.84         2.76         4.50 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       22.32        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 
        7.82         7.99         7.86         6.25         5.95         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 
        4.80        17.36        19.17        18.67        43.53        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1470 TCGA-24-1471 TCGA-24-1545 TCGA-24-1546 
       12.46        45.14         3.42         1.18        57.37        64.27 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1555 
       16.21        56.58        41.06        51.91        41.39        88.50 
TCGA-24-1556 TCGA-24-1557 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       70.62        39.88        45.50        47.70        25.87        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 TCGA-24-1842 TCGA-24-1843 TCGA-24-1845 
       17.23        90.15        48.33         8.32         3.48         3.81 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
        4.37        11.28         5.75         5.49         9.80        22.65 
TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 
       30.21        16.41        11.05        81.11         4.87       151.99 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
       44.84        58.16        34.82       109.68        14.43        53.95 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2262 
       28.18        64.01        44.48        57.07        36.16         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2290 
       47.54        31.63        70.45        44.58         0.82        36.23 
TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 
       16.64        55.86        53.26         1.02        26.93        31.99 
TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 
       51.06        37.02        34.98        36.95        33.96         2.99 
TCGA-25-1323 TCGA-25-1625 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 
       12.00        18.02         0.36        20.58         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1635 TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 
       56.94        60.59        51.22        24.99        85.05        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
       49.05         1.02        38.04         3.02        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       19.99        42.02         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1697 
       78.87        44.71        47.18       101.75        38.53        31.17 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
        0.53        16.90        18.64        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1766 
       29.23        34.62        17.00        85.68        66.77        39.09 
TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 
       31.23        22.98        24.36        22.52        17.29        11.84 
TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 
       12.30        14.93         8.35         7.20         5.36        34.62 
TCGA-29-2414 TCGA-29-2427 TCGA-29-2428 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 
       86.17        62.47        45.11        42.25        11.84        11.47 
TCGA-29-2436 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 
        9.76        51.91        36.26         2.47        15.68         0.26 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       44.91        34.78        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
        6.71        42.51        44.09        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 
       22.85        22.55         8.55        30.05        25.74        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       24.69        35.05        33.01        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.08        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-42-2582 TCGA-42-2587 
       20.52        14.17         6.05        16.14        14.30         9.07 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 
        9.44         7.56         7.46         7.63         1.48        24.03 
TCGA-57-1584 TCGA-57-1992 TCGA-57-1993 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 
       21.14        28.96        25.05        80.12        22.32       116.12 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 
        9.40        34.39         2.14         5.39        44.78        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 
        8.05        20.94        31.40        18.54        27.88        31.76 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       28.47        48.79        44.84        35.80         2.43        33.67 
TCGA-61-1895 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
        1.41         5.79        11.41        13.02         9.07        34.13 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 
       31.30        37.02        42.48        48.92        56.58        67.73 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       43.43        15.75        38.17         1.97         5.52        14.50 
TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2016 TCGA-61-2017 
       17.98         3.98        30.61        39.85         1.18        45.96 
TCGA-61-2087 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2104 
        4.80        51.72        71.74        61.64        58.39        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2613 
       20.68        44.52       125.72        22.22        31.07 

      2Q GAIN CNV 2Q GAIN WILD-TYPE 
             0.53              0.26 
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
           180.16            151.99 
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
            18.97             29.06 
[1] "0.5 - 180.2 (19.0)" "0.3 - 152.0 (29.1)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "2Q GAIN CNV"       "2Q GAIN CNV"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "2Q GAIN CNV"       "2Q GAIN CNV"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "2Q GAIN CNV"       "2Q GAIN CNV"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
[1] "hr=" "1.3"
D4V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  2Q GAIN CNV             0    98                0
  2Q GAIN WILD-TYPE       2   450                2
D4V3, multiclass
                  clus
vv                 2Q GAIN CNV 2Q GAIN WILD-TYPE
  OMENTUM                    0                 2
  OVARY                     98               450
  PERITONEUM OVARY           0                 2
D4V4, continuous
                   vv
clus                I+II III  IV
  2Q GAIN CNV          1  17   6
  2Q GAIN WILD-TYPE    3 116  28
D4V5, multiclass
      clus
vv     2Q GAIN CNV 2Q GAIN WILD-TYPE
  I+II           1                 3
  III           17               116
  IV             6                28
D4V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN CNV          2  100
  2Q GAIN WILD-TYPE    1  459
     clus
vv    2Q GAIN CNV 2Q GAIN WILD-TYPE
  NO            2                 1
  YES         100               459
                   vv
clus                R0 R1 R2
  2Q GAIN CNV        2  5  0
  2Q GAIN WILD-TYPE 12 21  2
D4V7, multiclass
    clus
vv   2Q GAIN CNV 2Q GAIN WILD-TYPE
  R0           2                12
  R1           5                21
  R2           0                 2

Clustering(5) Variable = 3p gain
D5V1, survival
                   sevent
clus2                 0   1
  3P GAIN CNV        55  50
  3P GAIN WILD-TYPE 208 234
      3P GAIN CNV 3P GAIN WILD-TYPE 
              105               442 
      3P GAIN CNV 3P GAIN WILD-TYPE 
               50               234 
$`3P GAIN CNV`
TCGA-04-1337 TCGA-04-1338 TCGA-04-1349 TCGA-04-1362 TCGA-04-1516 TCGA-04-1646 
        2.01        46.62        21.57        44.32        41.59        27.88 
TCGA-04-1655 TCGA-09-0364 TCGA-09-1665 TCGA-09-1668 TCGA-09-1670 TCGA-09-1672 
       45.34        29.16        41.59        55.36        17.98         5.85 
TCGA-09-1674 TCGA-09-2043 TCGA-10-0935 TCGA-10-0936 TCGA-13-0723 TCGA-13-0724 
        8.55         6.15        35.41        35.80        39.58         2.73 
TCGA-13-0751 TCGA-13-0760 TCGA-13-0795 TCGA-13-0800 TCGA-13-0884 TCGA-13-0911 
       55.17        11.54        19.56         8.12       107.18        27.68 
TCGA-13-0921 TCGA-13-1403 TCGA-13-1410 TCGA-13-1484 TCGA-13-1489 TCGA-13-1495 
        4.64        10.88         4.70        98.04        82.88        49.22 
TCGA-13-1504 TCGA-13-1507 TCGA-13-2060 TCGA-20-1683 TCGA-20-1686 TCGA-23-1109 
       16.57         4.77         8.58        25.38         2.93        51.35 
TCGA-23-1117 TCGA-23-2078 TCGA-23-2079 TCGA-24-0979 TCGA-24-0982 TCGA-24-1424 
       33.30        87.48        91.66        41.56        22.32         6.02 
TCGA-24-1426 TCGA-24-1428 TCGA-24-1434 TCGA-24-1467 TCGA-24-1470 TCGA-24-1474 
        5.36        17.36        18.67       105.99         3.42        22.19 
TCGA-24-1553 TCGA-24-1557 TCGA-24-1558 TCGA-24-1842 TCGA-24-1847 TCGA-24-1850 
       58.09        39.88        19.53         8.32        11.28         5.49 
TCGA-24-1920 TCGA-24-1927 TCGA-24-1928 TCGA-24-2019 TCGA-24-2020 TCGA-24-2038 
        9.80        16.41        11.05         4.87       151.99        44.48 
TCGA-24-2267 TCGA-24-2295 TCGA-25-1319 TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 
       47.54        33.11        65.00         2.96        18.58        15.78 
TCGA-25-1634 TCGA-25-1877 TCGA-25-1878 TCGA-25-2400 TCGA-25-2404 TCGA-29-1701 
       35.54        18.05        85.05        42.02        29.00        16.90 
TCGA-29-1710 TCGA-29-1770 TCGA-29-1778 TCGA-29-1783 TCGA-29-2425 TCGA-29-2428 
       29.23        24.36        14.93         7.20        65.00        45.11 
TCGA-29-2431 TCGA-30-1718 TCGA-30-1859 TCGA-30-1861 TCGA-30-1867 TCGA-30-1892 
       42.25        51.91        48.07        34.78         1.18        48.79 
TCGA-31-1950 TCGA-36-1574 TCGA-36-1578 TCGA-36-2529 TCGA-42-2587 TCGA-42-2590 
       18.77        22.55        27.85        35.05         9.07         7.46 
TCGA-57-1582 TCGA-57-1994 TCGA-59-2351 TCGA-61-1899 TCGA-61-1903 TCGA-61-1904 
       24.03        25.02       116.12         8.42        13.02         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1915 TCGA-61-2003 TCGA-61-2008 TCGA-61-2097 
       34.13        31.30        67.73         3.98        30.61        60.62 
TCGA-61-2111 TCGA-61-2612 TCGA-61-2614 
      125.72         6.35         8.58 

$`3P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1342 TCGA-04-1343 
       40.24        41.00         1.81        49.15        18.51        11.87 
TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 
       65.49        63.06        48.76        63.98        65.46        49.28 
TCGA-04-1361 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 
       32.52        33.67        76.54        71.47        82.36        56.55 
TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 
       19.99        38.37       119.08        29.06        84.20        55.40 
TCGA-04-1644 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 
       48.89        28.64        64.64        36.23        31.86        47.70 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
        9.47        57.73        17.95        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 TCGA-09-1667 TCGA-09-1669 TCGA-09-1673 
       89.33        74.89        57.57        61.87        30.48         3.02 
TCGA-09-1675 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
       97.55         6.12        35.15         4.50       112.37        71.11 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       63.09        39.75        20.91        26.93        12.46        54.31 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 
       25.91        81.47        18.48        33.24        32.28        11.70 
TCGA-10-0934 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 
        3.88        15.12        19.86         6.21        24.59        44.55 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0755 TCGA-13-0757 
       12.39        31.07        15.19        17.79         2.47        11.18 
TCGA-13-0758 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.38        34.06        32.25        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 
       38.93        36.72        28.70        30.35         8.71         7.79 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.28         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 
       68.91        91.40        74.27        66.64        70.39        61.81 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       67.99        69.01        43.36        57.47        56.15        57.07 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 
       19.36        47.38        48.33        47.84        44.94        44.84 
TCGA-13-0910 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 
       37.08        34.06        29.98        21.14        14.89        13.81 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 
        6.41         6.08         6.61         7.36         6.05         5.92 
TCGA-13-1409 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
        6.84         4.21         5.33        54.61        87.06        61.71 
TCGA-13-1483 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 
       29.39        20.68        22.39        70.82        52.44        73.55 
TCGA-13-1494 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       38.17         4.24        54.31        37.61        38.37        13.97 
TCGA-13-1501 TCGA-13-1505 TCGA-13-1506 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
       32.84         4.21         4.41         4.14         2.56         3.88 
TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
        3.09        14.24        12.23        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 
       23.05        25.94        26.20        72.20        27.48        19.07 
TCGA-20-1685 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 
       16.67         2.66        47.54        42.51        40.54        15.39 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       26.83        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1032 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 
        2.24        54.51         3.22        31.20        68.68         4.57 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 
       86.01       129.96         4.27         6.38        39.09        33.47 
TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2081 TCGA-23-2084 
       58.13         0.53        24.95       115.89        77.00        49.84 
TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
        2.76         4.70         4.50         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0980 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
       21.80         7.66        54.08        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 
        6.38         7.82         7.99         7.86         0.76         6.25 
TCGA-24-1425 TCGA-24-1427 TCGA-24-1430 TCGA-24-1431 TCGA-24-1435 TCGA-24-1436 
        5.95         4.80        28.34        19.17        43.53         8.55 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1469 TCGA-24-1471 TCGA-24-1544 
       72.92        12.46        45.14         9.11         1.18        26.96 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       57.37        64.27        16.21        56.58        41.06        51.91 
TCGA-24-1552 TCGA-24-1555 TCGA-24-1556 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 
       41.39        88.50        70.62        44.09        45.50        47.70 
TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 
       25.87        10.26        17.23        90.15        88.34        48.33 
TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1849 
       38.24         3.48         3.72         3.81         4.37         5.75 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1930 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 
       22.65        30.21        81.11        44.84        58.16        34.82 
TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 
      109.68        14.43        53.95        18.48        28.18        64.01 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2271 TCGA-24-2280 
       57.07        36.16         0.79         0.36        31.63        70.45 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 
       44.58         0.82        67.36        36.23        16.64        55.86 
TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       53.26         1.02        26.93        31.99        51.06        37.02 
TCGA-25-1317 TCGA-25-1318 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
        1.02        34.98        36.95        33.96         2.99        12.00 
TCGA-25-1625 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 
       18.02         0.36        20.58         7.86         0.30        56.94 
TCGA-25-1633 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-2042 TCGA-25-2391 
       60.59        51.22        14.93        24.99        13.02        49.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
        1.02        38.04         3.02        12.00        45.01        19.99 
TCGA-25-2401 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 
        2.96        30.97        26.96        78.87        44.71        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 
      101.75        38.53         0.79        33.70        31.17        68.28 
TCGA-29-1699 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1711 
        0.53        18.64        59.67        18.25        41.95        34.62 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 
       17.00        85.68        66.77        62.93        39.09        31.23 
TCGA-29-1769 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 
       22.98        22.52        17.29        12.36        11.84        12.30 
TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 TCGA-29-2429 
        8.35         5.36        34.62        86.17        62.47         4.87 
TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1853 TCGA-30-1855 
       11.84        11.47         9.76        38.07        36.26         2.47 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1860 TCGA-30-1862 TCGA-30-1866 TCGA-30-1880 
       15.68         0.26        44.91         6.08        36.62        57.57 
TCGA-30-1887 TCGA-30-1891 TCGA-31-1944 TCGA-31-1946 TCGA-31-1951 TCGA-31-1953 
       24.26        30.05        45.57        30.18        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       42.51        44.09         2.17        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 
       22.85         8.55        30.05        25.74        24.23        24.69 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       33.01        29.49        29.79        25.91        25.08        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 
       21.60         2.24        20.98        18.31        20.52        14.17 
TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 
        6.05        16.14        11.47        14.30         9.44         7.56 
TCGA-42-2591 TCGA-42-2593 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 
        7.63         1.48        11.38        21.14         1.74        22.32 
TCGA-57-1992 TCGA-57-1993 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2352 
       28.96        25.05       180.16        80.12        22.32         9.40 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 
       34.39         2.14         5.39        44.78        11.11         8.05 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 
       20.94        31.40        18.54        27.88         4.34        31.76 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       28.47        48.79        44.84        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1900 TCGA-61-1901 TCGA-61-1910 TCGA-61-1911 
       43.69         1.41         5.79        11.41        37.02        42.48 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       48.92        56.58        43.43        15.75        38.17         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 
        5.52        14.50        17.98        39.85        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
       45.96        45.40         4.80         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 
       61.64        58.39        65.49        55.50         6.48        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2113 TCGA-61-2613 
       20.68        44.52        22.22        31.07 

      3P GAIN CNV 3P GAIN WILD-TYPE 
             1.18              0.26 
      3P GAIN CNV 3P GAIN WILD-TYPE 
           151.99            180.16 
      3P GAIN CNV 3P GAIN WILD-TYPE 
           25.020            28.715 
[1] "1.2 - 152.0 (25.0)" "0.3 - 180.2 (28.7)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
      "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
      "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
      "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
      "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
      "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
      "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
[1] "hr=" "1.1"
D5V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  3P GAIN CNV             0   105                1
  3P GAIN WILD-TYPE       2   443                1
D5V3, multiclass
                  clus
vv                 3P GAIN CNV 3P GAIN WILD-TYPE
  OMENTUM                    0                 2
  OVARY                    105               443
  PERITONEUM OVARY           1                 1
D5V4, continuous
                   vv
clus                I+II III  IV
  3P GAIN CNV          0  27   3
  3P GAIN WILD-TYPE    4 106  31
D5V5, multiclass
      clus
vv     3P GAIN CNV 3P GAIN WILD-TYPE
  I+II           0                 4
  III           27               106
  IV             3                31
D5V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN CNV          0  109
  3P GAIN WILD-TYPE    3  450
     clus
vv    3P GAIN CNV 3P GAIN WILD-TYPE
  NO            0                 3
  YES         109               450
                   vv
clus                R0 R1 R2
  3P GAIN CNV        2  8  0
  3P GAIN WILD-TYPE 12 18  2
D5V7, multiclass
    clus
vv   3P GAIN CNV 3P GAIN WILD-TYPE
  R0           2                12
  R1           8                18
  R2           0                 2

Clustering(6) Variable = 3q gain
D6V1, survival
                   sevent
clus2                 0   1
  3Q GAIN CNV        97 104
  3Q GAIN WILD-TYPE 166 180
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
              201               346 
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
              104               180 
$`3Q GAIN CNV`
TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1343 TCGA-04-1346 
        1.81        49.15         2.01        46.62        11.87        65.49 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1371 
       21.57        63.98        32.52        44.32        33.67        82.36 
TCGA-04-1516 TCGA-04-1530 TCGA-04-1542 TCGA-04-1646 TCGA-04-1655 TCGA-09-0364 
       41.59       119.08        84.20        27.88        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-1665 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 
        9.47        57.73        41.59        55.36        30.48        17.98 
TCGA-09-1672 TCGA-09-1674 TCGA-09-2043 TCGA-09-2044 TCGA-09-2049 TCGA-09-2053 
        5.85         8.55         6.15         6.12       112.37        39.75 
TCGA-10-0933 TCGA-10-0935 TCGA-10-0936 TCGA-13-0723 TCGA-13-0724 TCGA-13-0727 
       11.70        35.41        35.80        39.58         2.73        15.19 
TCGA-13-0751 TCGA-13-0757 TCGA-13-0760 TCGA-13-0768 TCGA-13-0795 TCGA-13-0800 
       55.17        11.18        11.54         8.42        19.56         8.12 
TCGA-13-0802 TCGA-13-0804 TCGA-13-0884 TCGA-13-0888 TCGA-13-0897 TCGA-13-0901 
        8.19        35.28       107.18        70.39        57.47        19.36 
TCGA-13-0911 TCGA-13-0921 TCGA-13-1403 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 
       27.68         4.64        10.88         6.84         4.70         4.21 
TCGA-13-1484 TCGA-13-1487 TCGA-13-1489 TCGA-13-1495 TCGA-13-1496 TCGA-13-1504 
       98.04        22.39        82.88        49.22         4.24        16.57 
TCGA-13-1506 TCGA-13-1507 TCGA-13-2057 TCGA-13-2060 TCGA-13-2065 TCGA-20-0990 
        4.41         4.77        14.24         8.58         8.75        25.94 
TCGA-20-1683 TCGA-20-1686 TCGA-23-1021 TCGA-23-1031 TCGA-23-1109 TCGA-23-1110 
       25.38         2.93        47.54        18.87        51.35        54.51 
TCGA-23-1114 TCGA-23-1117 TCGA-23-1122 TCGA-23-1123 TCGA-23-1809 TCGA-23-2078 
       68.68        33.30        39.09        33.47         0.53        87.48 
TCGA-23-2079 TCGA-23-2084 TCGA-24-0968 TCGA-24-0970 TCGA-24-0979 TCGA-24-0982 
       91.66        49.84        19.63        11.64        41.56        22.32 
TCGA-24-1424 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1434 TCGA-24-1467 
        6.02         5.36         4.80        17.36        18.67       105.99 
TCGA-24-1470 TCGA-24-1474 TCGA-24-1553 TCGA-24-1557 TCGA-24-1558 TCGA-24-1604 
        3.42        22.19        58.09        39.88        19.53        88.34 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1847 TCGA-24-1850 TCGA-24-1920 
       38.24         8.32         3.48        11.28         5.49         9.80 
TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2026 
       16.41        11.05        81.11         4.87       151.99        34.82 
TCGA-24-2033 TCGA-24-2038 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 
       18.48        44.48        36.16         0.79         0.36        47.54 
TCGA-24-2280 TCGA-24-2295 TCGA-25-1312 TCGA-25-1317 TCGA-25-1319 TCGA-25-1321 
       70.45        33.11         1.02         1.02        65.00        33.96 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 
       12.00         2.96        18.58        18.02        15.78         0.36 
TCGA-25-1630 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 
        7.86        35.54        14.93        24.99        18.05        85.05 
TCGA-25-2396 TCGA-25-2398 TCGA-25-2400 TCGA-25-2404 TCGA-29-1698 TCGA-29-1701 
        3.02        45.01        42.02        29.00        68.28        16.90 
TCGA-29-1702 TCGA-29-1703 TCGA-29-1710 TCGA-29-1761 TCGA-29-1766 TCGA-29-1770 
       18.64        59.67        29.23        17.00        39.09        24.36 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1778 TCGA-29-1783 TCGA-29-2425 TCGA-29-2428 
       12.36        11.84        14.93         7.20        65.00        45.11 
TCGA-29-2431 TCGA-29-2432 TCGA-30-1718 TCGA-30-1857 TCGA-30-1859 TCGA-30-1861 
       42.25        11.84        51.91         0.26        48.07        34.78 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1887 TCGA-30-1892 TCGA-31-1950 TCGA-31-1956 
       36.62         1.18        24.26        48.79        18.77        44.09 
TCGA-36-1569 TCGA-36-1574 TCGA-36-1576 TCGA-36-1578 TCGA-36-1581 TCGA-36-2529 
       29.06        22.55        30.05        27.85        24.69        35.05 
TCGA-36-2530 TCGA-36-2534 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2587 
       33.01        29.79        14.17        16.14        11.47         9.07 
TCGA-42-2590 TCGA-42-2593 TCGA-57-1582 TCGA-57-1586 TCGA-57-1994 TCGA-59-2350 
        7.46         1.48        24.03        22.32        25.02        22.32 
TCGA-59-2351 TCGA-61-1722 TCGA-61-1728 TCGA-61-1733 TCGA-61-1899 TCGA-61-1903 
      116.12         8.05        27.88        31.76         8.42        13.02 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
        9.07        34.13        31.30        67.73        43.43        15.75 
TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2097 TCGA-61-2098 TCGA-61-2102 
       17.98         3.98        30.61        60.62        65.49         6.48 
TCGA-61-2111 TCGA-61-2612 TCGA-61-2614 
      125.72         6.35         8.58 

$`3Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1342 TCGA-04-1347 TCGA-04-1348 TCGA-04-1351 
       40.24        41.00        18.51        63.06        48.76        65.46 
TCGA-04-1356 TCGA-04-1365 TCGA-04-1367 TCGA-04-1514 TCGA-04-1517 TCGA-04-1525 
       49.28        76.54        71.47        56.55        19.99        38.37 
TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 
       29.06        55.40        48.89        28.64        64.64        36.23 
TCGA-04-1652 TCGA-04-1654 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
       31.86        47.70        17.95        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 TCGA-09-1667 TCGA-09-1673 TCGA-09-1675 
       89.33        74.89        57.57        61.87         3.02        97.55 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2050 TCGA-09-2051 TCGA-09-2054 TCGA-09-2055 
       35.15         4.50        71.11        63.09        20.91        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
       12.46        54.31        25.91        81.47        18.48        33.24 
TCGA-10-0931 TCGA-10-0934 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
       32.28         3.88        15.12        19.86         6.21        24.59 
TCGA-13-0720 TCGA-13-0725 TCGA-13-0726 TCGA-13-0730 TCGA-13-0755 TCGA-13-0758 
       44.55        12.39        31.07        17.79         2.47        11.38 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0791 TCGA-13-0792 
       34.06        32.25        31.04        21.40        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 TCGA-13-0803 
       28.70        30.35         8.71         7.79         8.28        43.82 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       35.28        13.61        68.91        91.40        74.27        66.64 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0899 TCGA-13-0900 
       61.81        67.99        69.01        43.36        56.15        57.07 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       47.38        48.33        47.84        44.94        44.84        37.08 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 
       34.06        29.98        21.14        14.89        13.81         6.41 
TCGA-13-0924 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1412 
        6.08         6.61         7.36         6.05         5.92         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1485 TCGA-13-1488 
       54.61        87.06        61.71        29.39        20.68        70.82 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       52.44        73.55        38.17        54.31        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1505 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
       13.97        32.84         4.21         4.14         2.56         3.88 
TCGA-13-1512 TCGA-13-2059 TCGA-13-2061 TCGA-13-2071 TCGA-20-0987 TCGA-20-0991 
        3.09        12.23        10.78         6.28        23.05        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-20-1687 TCGA-23-1022 
       72.20        27.48        19.07        16.67         2.66        42.51 
TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 
       40.54        15.39        26.83        31.73        49.41         8.81 
TCGA-23-1030 TCGA-23-1032 TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1118 
       29.10         2.24         3.22        31.20         4.57        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 
      129.96         4.27         6.38        58.13        24.95       115.89 
TCGA-23-2081 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0975 
       77.00         2.76         4.70         4.50         7.63        21.80 
TCGA-24-0980 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
        7.66        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 
        7.82         7.99         7.86         0.76         6.25         5.95 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 
       28.34        19.17        43.53         8.55        72.92        12.46 
TCGA-24-1466 TCGA-24-1469 TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
       45.14         9.11         1.18        26.96        57.37        64.27 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1555 
       16.21        56.58        41.06        51.91        41.39        88.50 
TCGA-24-1556 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       70.62        44.09        45.50        47.70        25.87        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 
       17.23        90.15        48.33         3.72         3.81         4.37 
TCGA-24-1849 TCGA-24-1923 TCGA-24-1924 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 
        5.75        22.65        30.21        44.84        58.16       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 TCGA-24-2254 TCGA-24-2271 
       14.43        53.95        28.18        64.01        57.07        31.63 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 
       44.58         0.82        67.36        36.23        16.64        55.86 
TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 
       53.26        26.93        31.99        51.06        37.02        34.98 
TCGA-25-1320 TCGA-25-1322 TCGA-25-1628 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 
       36.95         2.99        20.58         0.30        56.94        60.59 
TCGA-25-1635 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2397 
       51.22        13.02        49.05         1.02        38.04        12.00 
TCGA-25-2399 TCGA-25-2401 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
       19.99         2.96        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 
       47.18       101.75        38.53         0.79        33.70        31.17 
TCGA-29-1699 TCGA-29-1705 TCGA-29-1707 TCGA-29-1711 TCGA-29-1762 TCGA-29-1763 
        0.53        18.25        41.95        34.62        85.68        66.77 
TCGA-29-1764 TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 TCGA-29-1774 TCGA-29-1777 
       62.93        31.23        22.98        22.52        17.29        12.30 
TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 TCGA-29-2429 
        8.35         5.36        34.62        86.17        62.47         4.87 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 
       11.47         9.76        38.07        36.26         2.47        15.68 
TCGA-30-1860 TCGA-30-1862 TCGA-30-1880 TCGA-30-1891 TCGA-31-1944 TCGA-31-1946 
       44.91         6.08        57.57        30.05        45.57        30.18 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1959 TCGA-36-1568 TCGA-36-1570 
       22.45         6.71        42.51         2.17        28.73        21.53 
TCGA-36-1571 TCGA-36-1575 TCGA-36-1577 TCGA-36-1580 TCGA-36-2532 TCGA-36-2537 
       22.85         8.55        25.74        24.23        29.49        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.08        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2547 TCGA-36-2549 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2591 
       20.52         6.05        14.30         9.44         7.56         7.63 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1992 TCGA-57-1993 TCGA-59-2348 
       11.38        21.14         1.74        28.96        25.05       180.16 
TCGA-59-2349 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
       80.12         9.40        34.39         2.14         5.39        44.78 
TCGA-61-1721 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1730 TCGA-61-1734 
       11.11        20.94        31.40        18.54         4.34        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 
       48.79        44.84        35.80         2.43        33.67        43.69 
TCGA-61-1895 TCGA-61-1900 TCGA-61-1901 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
        1.41         5.79        11.41        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2009 
       56.58        38.17         1.97         5.52        14.50        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       30.64         1.18        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2101 TCGA-61-2104 
       51.72        71.74        61.64        58.39        55.50        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2113 TCGA-61-2613 
       20.68        44.52        22.22        31.07 

      3Q GAIN CNV 3Q GAIN WILD-TYPE 
             0.26              0.30 
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
           151.99            180.16 
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
           24.030            30.015 
[1] "0.3 - 152.0 (24.0)" "0.3 - 180.2 (30.0)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
[1] "hr=" "1.1"
D6V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  3Q GAIN CNV             0   200                2
  3Q GAIN WILD-TYPE       2   348                0
D6V3, multiclass
                  clus
vv                 3Q GAIN CNV 3Q GAIN WILD-TYPE
  OMENTUM                    0                 2
  OVARY                    200               348
  PERITONEUM OVARY           2                 0
D6V4, continuous
                   vv
clus                I+II III IV
  3Q GAIN CNV          1  48 10
  3Q GAIN WILD-TYPE    3  85 24
D6V5, multiclass
      clus
vv     3Q GAIN CNV 3Q GAIN WILD-TYPE
  I+II           1                 3
  III           48                85
  IV            10                24
D6V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN CNV          0  205
  3Q GAIN WILD-TYPE    3  354
     clus
vv    3Q GAIN CNV 3Q GAIN WILD-TYPE
  NO            0                 3
  YES         205               354
                   vv
clus                R0 R1 R2
  3Q GAIN CNV        3 14  1
  3Q GAIN WILD-TYPE 11 12  1
D6V7, multiclass
    clus
vv   3Q GAIN CNV 3Q GAIN WILD-TYPE
  R0           3                11
  R1          14                12
  R2           1                 1

Clustering(7) Variable = 4p gain
D7V1, survival
                   sevent
clus2                 0   1
  4P GAIN CNV        11  19
  4P GAIN WILD-TYPE 252 265
      4P GAIN CNV 4P GAIN WILD-TYPE 
               30               517 
      4P GAIN CNV 4P GAIN WILD-TYPE 
               19               265 
$`4P GAIN CNV`
TCGA-04-1349 TCGA-04-1356 TCGA-04-1364 TCGA-04-1530 TCGA-04-1646 TCGA-09-1668 
       21.57        49.28        33.67       119.08        27.88        55.36 
TCGA-09-2048 TCGA-13-0714 TCGA-13-0802 TCGA-13-0883 TCGA-13-2060 TCGA-23-1026 
        4.50         6.21         8.19        68.91         8.58        26.83 
TCGA-23-1110 TCGA-23-1114 TCGA-23-2645 TCGA-24-1427 TCGA-24-1428 TCGA-24-1558 
       54.51        68.68         4.50         4.80        17.36        19.53 
TCGA-24-1843 TCGA-24-1928 TCGA-24-2033 TCGA-25-1635 TCGA-25-1877 TCGA-25-2392 
        3.48        11.05        18.48        51.22        18.05         1.02 
TCGA-25-2396 TCGA-29-1691 TCGA-30-1718 TCGA-36-1570 TCGA-61-1915 TCGA-61-1918 
        3.02        47.18        51.91        21.53        67.73        15.75 

$`4P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1350 
       18.51        11.87        65.49        63.06        48.76        63.98 
TCGA-04-1351 TCGA-04-1361 TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 
       65.46        32.52        44.32        76.54        71.47        82.36 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1536 TCGA-04-1542 
       56.55        41.59        19.99        38.37        29.06        84.20 
TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 
       55.40        48.89        28.64        64.64        36.23        31.86 
TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 
       47.70        45.34        29.16         9.47        57.73        17.95 
TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 
       35.54         9.96        38.43        89.33        74.89        41.59 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       57.57        61.87        30.48        17.98         5.85         3.02 
TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2049 
        8.55        97.55         6.15         6.12        35.15       112.37 
TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 
       71.11        63.09        39.75        20.91        26.93        12.46 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 
       54.31        25.91        81.47        18.48        33.24        32.28 
TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 
       11.70         3.88        35.41        35.80        15.12        19.86 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 
       24.59        44.55        39.58         2.73        12.39        31.07 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       15.19        17.79        55.17         2.47        11.18        11.38 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.54        34.06        32.25        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 
       38.93        36.72        28.70        30.35        19.56         8.71 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        7.79         8.12         8.28        43.82        35.28        35.28 
TCGA-13-0807 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 
       13.61       107.18        91.40        74.27        66.64        70.39 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 
       61.81        67.99        69.01        43.36        57.47        56.15 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 
       57.07        19.36        47.38        48.33        47.84        44.94 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       44.84        37.08        27.68        34.06        29.98        21.14 
TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       14.89        13.81         4.64         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
        6.61         7.36         6.05         5.92         6.84         4.70 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.21         5.33        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 
       98.04        20.68        22.39        70.82        82.88        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 
       73.55        38.17        49.22         4.24        54.31        37.61 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       38.37        13.97        32.84        16.57         4.21         4.41 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 
        4.77         4.14         2.56         3.88         3.09        14.24 
TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 
       12.23        10.78         8.75         6.28        23.05        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 
       26.20        72.20        27.48        25.38        19.07        16.67 
TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 
        2.93         2.66        47.54        42.51        40.54        15.39 
TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       31.73        49.41         8.81        29.10        18.87         2.24 
TCGA-23-1109 TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
       51.35         3.22        31.20         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
      129.96         4.27         6.38        39.09        33.47        58.13 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
        0.53        24.95       115.89        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
       49.84         2.76         4.70         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 
       21.80        41.56         7.66        22.32        54.08        63.55 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 
       47.41         6.31         6.38         7.82         7.99         7.86 
TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1430 
        0.76         6.25         6.02         5.95         5.36        28.34 
TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 
       19.17        18.67        43.53         8.55        72.92        12.46 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 
       45.14       105.99         9.11         3.42         1.18        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 
       26.96        57.37        64.27        16.21        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       51.91        41.39        58.09        88.50        70.62        39.88 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1844 
       90.15        88.34        48.33        38.24         8.32         3.72 
TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.81         4.37        11.28         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 
       22.65        30.21        16.41        81.11         4.87       151.99 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
       44.84        58.16        34.82       109.68        14.43        53.95 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 
       28.18        64.01        44.48        57.07        36.16         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
        0.36        47.54        31.63        70.45        44.58         0.82 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 
       67.36        36.23        16.64        33.11        55.86        53.26 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 
        1.02        26.93        31.99        51.06        37.02         1.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
       34.98        65.00        36.95        33.96         2.99        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
        2.96        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 
        7.86         0.30        56.94        60.59        35.54        14.93 
TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 TCGA-25-2397 
       24.99        85.05        13.02        49.05        38.04        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
       45.01        19.99        42.02         2.96        29.00        30.97 
TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       26.96        78.87        44.71       101.75        38.53         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
       33.70        31.17        68.28         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       59.67        18.25        41.95        29.23        34.62        17.00 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       85.68        66.77        62.93        39.09        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 
       24.36        22.52        17.29        12.36        11.84        12.30 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 
       14.93         8.35         7.20         5.36        34.62        86.17 
TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
       65.00        62.47        45.11         4.87        42.25        11.84 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 
       11.47         9.76        38.07        36.26         2.47        15.68 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 
        0.26        48.07        44.91        34.78         6.08        36.62 
TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 
        1.18        57.57        24.26        30.05        48.79        45.57 
TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 
       30.18        18.77        22.45         6.71        42.51        44.09 
TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 
        2.17        28.73        29.06        22.85        22.55         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 
       30.05        25.74        27.85        24.23        24.69        35.05 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       33.01        29.49        29.79        25.91        25.08        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 
       21.60         2.24        20.98        18.31        20.52        14.17 
TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 
        6.05        16.14        11.47        14.30         9.07         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 
        7.56         7.46         7.63         1.48        24.03        11.38 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 
       21.14         1.74        22.32        28.96        25.05        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 
      180.16        80.12        22.32       116.12         9.40        34.39 
TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
        2.14         5.39        44.78        11.11         8.05        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 
       31.40        18.54        27.88         4.34        31.76        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 
       48.79        44.84        35.80         2.43        33.67        43.69 
TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
        1.41         8.42         5.79        11.41        13.02         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
       34.13        31.30        37.02        42.48        48.92        56.58 
TCGA-61-1917 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 
       43.43        38.17         1.97         5.52        14.50        17.98 
TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 
        3.98        30.61        39.85        30.64         1.18        45.96 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.40         4.80         4.77        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 
       58.39        60.62        65.49        55.50         6.48        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 
       20.68        44.52       125.72        22.22         6.35        31.07 
TCGA-61-2614 
        8.58 

      4P GAIN CNV 4P GAIN WILD-TYPE 
             1.02              0.26 
      4P GAIN CNV 4P GAIN WILD-TYPE 
           119.08            180.16 
      4P GAIN CNV 4P GAIN WILD-TYPE 
            20.53             28.70 
[1] "1.0 - 119.1 (20.5)" "0.3 - 180.2 (28.7)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "4P GAIN CNV"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "4P GAIN CNV"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "4P GAIN CNV"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D7V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  4P GAIN CNV             0    30                0
  4P GAIN WILD-TYPE       2   518                2
D7V3, multiclass
                  clus
vv                 4P GAIN CNV 4P GAIN WILD-TYPE
  OMENTUM                    0                 2
  OVARY                     30               518
  PERITONEUM OVARY           0                 2
D7V4, continuous
                   vv
clus                I+II III  IV
  4P GAIN CNV          0   7   1
  4P GAIN WILD-TYPE    4 126  33
D7V5, multiclass
      clus
vv     4P GAIN CNV 4P GAIN WILD-TYPE
  I+II           0                 4
  III            7               126
  IV             1                33
D7V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN CNV          0   31
  4P GAIN WILD-TYPE    3  528
     clus
vv    4P GAIN CNV 4P GAIN WILD-TYPE
  NO            0                 3
  YES          31               528
                   vv
clus                R0 R1 R2
  4P GAIN CNV        0  1  0
  4P GAIN WILD-TYPE 14 25  2
D7V7, multiclass
[1] "Remove cluster labels:" "4P GAIN CNV"           
clus
      4P GAIN CNV 4P GAIN WILD-TYPE 
                1                41 
       TCGA-04-1516        TCGA-04-1644        TCGA-13-0807        TCGA-13-0911 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-2414        TCGA-29-2425        TCGA-29-2427        TCGA-29-2428 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-2429        TCGA-29-2431        TCGA-29-2432        TCGA-29-2434 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-2436        TCGA-36-2529        TCGA-36-2530        TCGA-36-2532 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2534        TCGA-36-2537        TCGA-36-2538        TCGA-36-2540 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2542        TCGA-36-2543        TCGA-36-2544        TCGA-36-2545 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2547        TCGA-36-2548        TCGA-36-2549        TCGA-36-2551 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2552        TCGA-42-2582        TCGA-42-2587        TCGA-42-2588 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2593        TCGA-57-1993 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-2612        TCGA-61-2613 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2614 
"4P GAIN WILD-TYPE" 

Clustering(8) Variable = 4q gain
D8V1, survival
                   sevent
clus2                 0   1
  4Q GAIN CNV         6  10
  4Q GAIN WILD-TYPE 257 274
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
               16               531 
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
               10               274 
$`4Q GAIN CNV`
TCGA-04-1349 TCGA-04-1356 TCGA-04-1530 TCGA-09-1668 TCGA-10-0936 TCGA-13-0714 
       21.57        49.28       119.08        55.36        35.80         6.21 
TCGA-13-0802 TCGA-13-2060 TCGA-23-2645 TCGA-24-1427 TCGA-24-1558 TCGA-24-1843 
        8.19         8.58         4.50         4.80        19.53         3.48 
TCGA-25-1877 TCGA-25-2396 TCGA-29-1691 TCGA-29-1702 
       18.05         3.02        47.18        18.64 

$`4Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1350 
       18.51        11.87        65.49        63.06        48.76        63.98 
TCGA-04-1351 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       65.46        32.52        44.32        33.67        76.54        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1536 
       82.36        56.55        41.59        19.99        38.37        29.06 
TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 
       84.20        55.40        48.89        27.88        28.64        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       36.23        31.86        47.70        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       57.73        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1669 TCGA-09-1670 
       74.89        41.59        57.57        61.87        30.48        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
        5.85         3.02         8.55        97.55         6.15         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 
       35.15         4.50       112.37        71.11        63.09        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       20.91        26.93        12.46        54.31        25.91        81.47 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 
       18.48        33.24        32.28        11.70         3.88        35.41 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 
       15.12        19.86        24.59        44.55        39.58         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 
       12.39        31.07        15.19        17.79        55.17         2.47 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 
       11.18        11.38        11.54        34.06        32.25        31.04 
TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 
       21.40         8.42        38.93        36.72        28.70        30.35 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0803 
       19.56         8.71         7.79         8.12         8.28        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 
       35.28        35.28        13.61        68.91       107.18        91.40 
TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
       74.27        66.64        70.39        61.81        67.99        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 
       43.36        57.47        56.15        57.07        19.36        47.38 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       48.33        47.84        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       34.06        29.98        21.14        14.89        13.81         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
        6.41         6.08        10.88         6.61         7.36         6.05 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 
        5.92         6.84         4.70         4.21         5.33        54.61 
TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 
       87.06        61.71        29.39        98.04        20.68        22.39 
TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 
       70.82        82.88        52.44        73.55        38.17        49.22 
TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 
        4.24        54.31        37.61        38.37        13.97        32.84 
TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 
       16.57         4.21         4.41         4.77         4.14         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 
        3.88         3.09        14.24        12.23        10.78         8.75 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 
        6.28        23.05        25.94        26.20        72.20        27.48 
TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
       25.38        19.07        16.67         2.93         2.66        47.54 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       42.51        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
        3.22        31.20        68.68         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
      129.96         4.27         6.38        39.09        33.47        58.13 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
        0.53        24.95       115.89        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
       49.84         2.76         4.70         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 
       21.80        41.56         7.66        22.32        54.08        63.55 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 
       47.41         6.31         6.38         7.82         7.99         7.86 
TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1428 
        0.76         6.25         6.02         5.95         5.36        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 
       28.34        19.17        18.67        43.53         8.55        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 
       12.46        45.14       105.99         9.11         3.42         1.18 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
       22.19        26.96        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 
       41.06        51.91        41.39        58.09        88.50        70.62 
TCGA-24-1557 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       39.88        44.09        45.50        47.70        25.87        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 
       17.23        90.15        88.34        48.33        38.24         8.32 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
        3.72         3.81         4.37        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        9.80        22.65        30.21        16.41        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 
        4.87       151.99        44.84        58.16        34.82       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
       14.43        53.95        18.48        28.18        64.01        44.48 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       57.07        36.16         0.79         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       70.45        44.58         0.82        67.36        36.23        16.64 
TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 
       33.11        55.86        53.26         1.02        26.93        31.99 
TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 
       51.06        37.02         1.02        34.98        65.00        36.95 
TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 
       33.96         2.99        12.00         2.96        18.58        18.02 
TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 
       15.78         0.36        20.58         7.86         0.30        56.94 
TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 
       60.59        35.54        51.22        14.93        24.99        85.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2397 TCGA-25-2398 
       13.02        49.05         1.02        38.04        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       19.99        42.02         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 
       78.87        44.71       101.75        38.53         0.79        33.70 
TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1703 TCGA-29-1705 
       31.17        68.28         0.53        16.90        59.67        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 
       41.95        29.23        34.62        17.00        85.68        66.77 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 
       62.93        39.09        31.23        22.98        24.36        22.52 
TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 
       17.29        12.36        11.84        12.30        14.93         8.35 
TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 
        7.20         5.36        34.62        86.17        65.00        62.47 
TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 
       45.11         4.87        42.25        11.84        11.47         9.76 
TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 
       38.07        51.91        36.26         2.47        15.68         0.26 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 
       48.07        44.91        34.78         6.08        36.62         1.18 
TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
       57.57        24.26        30.05        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 
       18.77        22.45         6.71        42.51        44.09         2.17 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 
       28.73        29.06        21.53        22.85        22.55         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 
       30.05        25.74        27.85        24.23        24.69        35.05 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       33.01        29.49        29.79        25.91        25.08        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 
       21.60         2.24        20.98        18.31        20.52        14.17 
TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 
        6.05        16.14        11.47        14.30         9.07         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 
        7.56         7.46         7.63         1.48        24.03        11.38 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 
       21.14         1.74        22.32        28.96        25.05        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 
      180.16        80.12        22.32       116.12         9.40        34.39 
TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
        2.14         5.39        44.78        11.11         8.05        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 
       31.40        18.54        27.88         4.34        31.76        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 
       48.79        44.84        35.80         2.43        33.67        43.69 
TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
        1.41         8.42         5.79        11.41        13.02         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
       34.13        31.30        37.02        42.48        48.92        56.58 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       67.73        43.43        15.75        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 
       14.50        17.98         3.98        30.61        39.85        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
        1.18        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
       71.74        61.64        58.39        60.62        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 
        6.48        76.83        20.68        44.52       125.72        22.22 
TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        6.35        31.07         8.58 

      4Q GAIN CNV 4Q GAIN WILD-TYPE 
             3.02              0.26 
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
           119.08            180.16 
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
           18.345            28.640 
[1] "3.0 - 119.1 (18.3)" "0.3 - 180.2 (28.6)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D8V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  4Q GAIN CNV             0    16                0
  4Q GAIN WILD-TYPE       2   532                2
D8V3, multiclass
                  clus
vv                 4Q GAIN CNV 4Q GAIN WILD-TYPE
  OMENTUM                    0                 2
  OVARY                     16               532
  PERITONEUM OVARY           0                 2
D8V4, continuous
                   vv
clus                I+II III  IV
  4Q GAIN CNV          0   3   0
  4Q GAIN WILD-TYPE    4 130  34
D8V5, multiclass
      clus
vv     4Q GAIN CNV 4Q GAIN WILD-TYPE
  I+II           0                 4
  III            3               130
  IV             0                34
D8V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN CNV          0   16
  4Q GAIN WILD-TYPE    3  543
     clus
vv    4Q GAIN CNV 4Q GAIN WILD-TYPE
  NO            0                 3
  YES          16               543
                   vv
clus                R0 R1 R2
  4Q GAIN CNV        0  0  0
  4Q GAIN WILD-TYPE 14 26  2
D8V7, multiclass

Clustering(9) Variable = 5p gain
D9V1, survival
                   sevent
clus2                 0   1
  5P GAIN CNV        66  72
  5P GAIN WILD-TYPE 197 212
      5P GAIN CNV 5P GAIN WILD-TYPE 
              138               409 
      5P GAIN CNV 5P GAIN WILD-TYPE 
               72               212 
$`5P GAIN CNV`
TCGA-04-1337 TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1517 TCGA-04-1530 
        2.01        18.51        65.49        63.06        19.99       119.08 
TCGA-04-1542 TCGA-04-1646 TCGA-04-1654 TCGA-09-0367 TCGA-09-1661 TCGA-09-1674 
       84.20        27.88        47.70        17.95        38.43         8.55 
TCGA-09-1675 TCGA-09-2043 TCGA-10-0927 TCGA-10-0930 TCGA-10-0933 TCGA-10-0936 
       97.55         6.15        81.47        33.24        11.70        35.80 
TCGA-13-0717 TCGA-13-0723 TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 
       24.59        39.58        12.39        15.19        17.79        55.17 
TCGA-13-0757 TCGA-13-0760 TCGA-13-0766 TCGA-13-0792 TCGA-13-0801 TCGA-13-0883 
       11.18        11.54        21.40        36.72         8.28        68.91 
TCGA-13-0886 TCGA-13-0889 TCGA-13-0899 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 
       74.27        61.81        56.15        48.33        47.84        44.94 
TCGA-13-0911 TCGA-13-1403 TCGA-13-1404 TCGA-13-1407 TCGA-13-1408 TCGA-13-1481 
       27.68        10.88         6.61         6.05         5.92        87.06 
TCGA-13-1484 TCGA-13-1488 TCGA-13-1492 TCGA-13-1501 TCGA-13-1504 TCGA-13-1506 
       98.04        70.82        73.55        32.84        16.57         4.41 
TCGA-13-1507 TCGA-13-1512 TCGA-20-1685 TCGA-20-1686 TCGA-23-1024 TCGA-23-1029 
        4.77         3.09        16.67         2.93        15.39         8.81 
TCGA-23-1111 TCGA-23-1116 TCGA-23-1122 TCGA-23-1809 TCGA-23-2079 TCGA-23-2084 
        3.22         4.57        39.09         0.53        91.66        49.84 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0975 TCGA-24-0979 TCGA-24-0982 TCGA-24-1104 
        4.70         4.50        21.80        41.56        22.32        63.55 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1423 TCGA-24-1425 TCGA-24-1428 TCGA-24-1436 
        7.82         7.99         6.25         5.95        17.36         8.55 
TCGA-24-1471 TCGA-24-1474 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
        1.18        22.19        58.09        88.50        70.62        39.88 
TCGA-24-1604 TCGA-24-1616 TCGA-24-1845 TCGA-24-1847 TCGA-24-1850 TCGA-24-1923 
       88.34        38.24         3.81        11.28         5.49        22.65 
TCGA-24-2020 TCGA-24-2026 TCGA-24-2260 TCGA-24-2267 TCGA-24-2288 TCGA-24-2289 
      151.99        34.82        36.16        47.54         0.82        67.36 
TCGA-24-2295 TCGA-24-2298 TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 TCGA-25-1329 
       33.11        53.26        34.98        65.00        33.96         2.96 
TCGA-25-1627 TCGA-25-1634 TCGA-25-1877 TCGA-25-1878 TCGA-25-2396 TCGA-29-1688 
        0.36        35.54        18.05        85.05         3.02        78.87 
TCGA-29-1691 TCGA-29-1695 TCGA-29-1707 TCGA-29-1761 TCGA-29-1763 TCGA-29-1766 
       47.18         0.79        41.95        17.00        66.77        39.09 
TCGA-29-1768 TCGA-29-1770 TCGA-29-1774 TCGA-29-2425 TCGA-29-2432 TCGA-30-1718 
       31.23        24.36        17.29        65.00        11.84        51.91 
TCGA-31-1950 TCGA-36-1578 TCGA-36-1581 TCGA-36-2529 TCGA-36-2548 TCGA-42-2582 
       18.77        27.85        24.69        35.05        14.17        14.30 
TCGA-42-2588 TCGA-42-2593 TCGA-57-1582 TCGA-57-1585 TCGA-57-1993 TCGA-61-1725 
        9.44         1.48        24.03         1.74        25.05        31.40 
TCGA-61-1733 TCGA-61-1903 TCGA-61-1918 TCGA-61-1919 TCGA-61-2003 TCGA-61-2012 
       31.76        13.02        15.75        38.17         3.98        30.64 
TCGA-61-2087 TCGA-61-2098 TCGA-61-2101 TCGA-61-2111 TCGA-61-2612 TCGA-61-2614 
        4.80        65.49        55.50       125.72         6.35         8.58 

$`5P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1343 
       40.24        41.00         1.81        49.15        46.62        11.87 
TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 
       48.76        21.57        63.98        65.46        49.28        32.52 
TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 
       44.32        33.67        76.54        71.47        82.36        56.55 
TCGA-04-1516 TCGA-04-1525 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 
       41.59        38.37        29.06        55.40        48.89        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       64.64        36.23        31.86        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 
       57.73        35.54         9.96        89.33        74.89        41.59 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 
       57.57        61.87        55.36        30.48        17.98         5.85 
TCGA-09-1673 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
        3.02         6.12        35.15         4.50       112.37        71.11 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       63.09        39.75        20.91        26.93        12.46        54.31 
TCGA-10-0926 TCGA-10-0928 TCGA-10-0931 TCGA-10-0934 TCGA-10-0935 TCGA-10-0937 
       25.91        18.48        32.28         3.88        35.41        15.12 
TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 TCGA-13-0724 TCGA-13-0726 TCGA-13-0755 
       19.86         6.21        44.55         2.73        31.07         2.47 
TCGA-13-0758 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0768 TCGA-13-0791 
       11.38        34.06        32.25        31.04         8.42        38.93 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       28.70        30.35        19.56         8.71         7.79         8.12 
TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0884 
        8.19        43.82        35.28        35.28        13.61       107.18 
TCGA-13-0885 TCGA-13-0887 TCGA-13-0888 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
       91.40        66.64        70.39        67.99        69.01        43.36 
TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0908 TCGA-13-0910 
       57.47        57.07        19.36        47.38        44.84        37.08 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       34.06        29.98        21.14        14.89        13.81         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1405 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 
        6.41         6.08         7.36         6.84         4.70         4.21 
TCGA-13-1412 TCGA-13-1477 TCGA-13-1482 TCGA-13-1483 TCGA-13-1485 TCGA-13-1487 
        5.33        54.61        61.71        29.39        20.68        22.39 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 
       82.88        52.44        38.17        49.22         4.24        54.31 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1505 TCGA-13-1509 TCGA-13-1510 
       37.61        38.37        13.97         4.21         4.14         2.56 
TCGA-13-1511 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 
        3.88        14.24        12.23         8.58        10.78         8.75 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 
        6.28        23.05        25.94        26.20        72.20        27.48 
TCGA-20-1683 TCGA-20-1684 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 
       25.38        19.07         2.66        47.54        42.51        40.54 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       26.83        31.73        49.41        29.10        18.87         2.24 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 TCGA-23-1117 TCGA-23-1118 
       51.35        54.51        31.20        68.68        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1123 TCGA-23-1124 TCGA-23-2072 
      129.96         4.27         6.38        33.47        58.13        24.95 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2081 TCGA-23-2641 TCGA-24-0966 TCGA-24-0968 
      115.89        87.48        77.00         2.76         7.63        19.63 
TCGA-24-0970 TCGA-24-0980 TCGA-24-1103 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       11.64         7.66        54.08        47.41         6.31         6.38 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1424 TCGA-24-1426 TCGA-24-1427 TCGA-24-1430 
        7.86         0.76         6.02         5.36         4.80        28.34 
TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 
       19.17        18.67        43.53        72.92        12.46        45.14 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
      105.99         9.11         3.42        26.96        57.37        64.27 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1558 
       16.21        56.58        41.06        51.91        41.39        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1614 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 
       90.15        48.33         8.32         3.48         3.72         4.37 
TCGA-24-1849 TCGA-24-1920 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        5.75         9.80        30.21        16.41        11.05        81.11 
TCGA-24-2019 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
        4.87        44.84        58.16       109.68        14.43        53.95 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2261 
       18.48        28.18        64.01        44.48        57.07         0.79 
TCGA-24-2262 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2290 TCGA-24-2293 
        0.36        31.63        70.45        44.58        36.23        16.64 
TCGA-24-2297 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       55.86         1.02        26.93        31.99        51.06        37.02 
TCGA-25-1317 TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 TCGA-25-1623 TCGA-25-1625 
        1.02        36.95         2.99        12.00        18.58        18.02 
TCGA-25-1626 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 
       15.78        20.58         7.86         0.30        56.94        60.59 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       51.22        14.93        24.99        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 
       38.04        12.00        45.01        19.99        42.02         2.96 
TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 
       29.00        30.97        26.96        44.71       101.75        38.53 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
       33.70        31.17        68.28         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1710 TCGA-29-1711 TCGA-29-1762 TCGA-29-1764 
       59.67        18.25        29.23        34.62        85.68        62.93 
TCGA-29-1769 TCGA-29-1771 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       22.98        22.52        12.36        11.84        12.30        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 
        8.35         7.20         5.36        34.62        86.17        62.47 
TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 
       45.11         4.87        42.25        11.47         9.76        38.07 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 
       36.26         2.47        15.68         0.26        48.07        44.91 
TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       34.78         6.08        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1951 TCGA-31-1953 
       30.05        48.79        45.57        30.18        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       42.51        44.09         2.17        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 
       22.85        22.55         8.55        30.05        25.74        24.23 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       33.01        29.49        29.79        25.91        25.08        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2549 
       21.60         2.24        20.98        18.31        20.52         6.05 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2587 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
       16.14        11.47         9.07         7.56         7.46         7.63 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1586 TCGA-57-1992 TCGA-57-1994 TCGA-59-2348 
       11.38        21.14        22.32        28.96        25.02       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 
       80.12        22.32       116.12         9.40        34.39         2.14 
TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1727 
        5.39        44.78        11.11         8.05        20.94        18.54 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
       27.88         4.34        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 
        2.43        33.67        43.69         1.41         8.42         5.79 
TCGA-61-1901 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 
       11.41         9.07        34.13        31.30        37.02        42.48 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1995 TCGA-61-1998 
       48.92        56.58        67.73        43.43         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 TCGA-61-2009 TCGA-61-2016 TCGA-61-2017 
       14.50        17.98        30.61        39.85         1.18        45.96 
TCGA-61-2018 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
       45.40         4.77        51.72        71.74        61.64        58.39 
TCGA-61-2097 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2113 
       60.62         6.48        76.83        20.68        44.52        22.22 
TCGA-61-2613 
       31.07 

      5P GAIN CNV 5P GAIN WILD-TYPE 
             0.36              0.26 
      5P GAIN CNV 5P GAIN WILD-TYPE 
           151.99            180.16 
      5P GAIN CNV 5P GAIN WILD-TYPE 
            24.64             28.73 
[1] "0.4 - 152.0 (24.6)" "0.3 - 180.2 (28.7)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
      "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
      "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
      "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
[1] "hr=" "1.1"
D9V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  5P GAIN CNV             0   138                2
  5P GAIN WILD-TYPE       2   410                0
D9V3, multiclass
                  clus
vv                 5P GAIN CNV 5P GAIN WILD-TYPE
  OMENTUM                    0                 2
  OVARY                    138               410
  PERITONEUM OVARY           2                 0
D9V4, continuous
                   vv
clus                I+II III IV
  5P GAIN CNV          0  35 11
  5P GAIN WILD-TYPE    4  98 23
D9V5, multiclass
      clus
vv     5P GAIN CNV 5P GAIN WILD-TYPE
  I+II           0                 4
  III           35                98
  IV            11                23
D9V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN CNV          1  143
  5P GAIN WILD-TYPE    2  416
     clus
vv    5P GAIN CNV 5P GAIN WILD-TYPE
  NO            1                 2
  YES         143               416
                   vv
clus                R0 R1 R2
  5P GAIN CNV        2  7  2
  5P GAIN WILD-TYPE 12 19  0
D9V7, multiclass
    clus
vv   5P GAIN CNV 5P GAIN WILD-TYPE
  R0           2                12
  R1           7                19
  R2           2                 0

Clustering(10) Variable = 5q gain
D10V1, survival
                   sevent
clus2                 0   1
  5Q GAIN CNV        16  14
  5Q GAIN WILD-TYPE 247 270
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
               30               517 
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
               14               270 
$`5Q GAIN CNV`
TCGA-04-1337 TCGA-04-1347 TCGA-04-1530 TCGA-10-0930 TCGA-10-0936 TCGA-13-0792 
        2.01        63.06       119.08        33.24        35.80        36.72 
TCGA-13-0911 TCGA-13-1492 TCGA-23-1111 TCGA-23-1116 TCGA-23-2079 TCGA-23-2645 
       27.68        73.55         3.22         4.57        91.66         4.50 
TCGA-24-1104 TCGA-24-1417 TCGA-24-1428 TCGA-24-1436 TCGA-24-1471 TCGA-24-1556 
       63.55         7.82        17.36         8.55         1.18        70.62 
TCGA-24-1604 TCGA-24-1845 TCGA-24-2288 TCGA-25-1329 TCGA-29-1688 TCGA-29-1763 
       88.34         3.81         0.82         2.96        78.87        66.77 
TCGA-29-2432 TCGA-36-1569 TCGA-36-2529 TCGA-61-1725 TCGA-61-2612 TCGA-61-2614 
       11.84        29.06        35.05        31.40         6.35         8.58 

$`5Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00         1.81        49.15        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 
       11.87        65.49        48.76        21.57        63.98        65.46 
TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       49.28        32.52        44.32        33.67        76.54        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1536 
       82.36        56.55        41.59        19.99        38.37        29.06 
TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 
       84.20        55.40        48.89        27.88        28.64        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       36.23        31.86        47.70        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       57.73        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       74.89        41.59        57.57        61.87        55.36        30.48 
TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 
       17.98         5.85         3.02         8.55        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
        6.12        35.15         4.50       112.37        71.11        63.09 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       39.75        20.91        26.93        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 
       81.47        18.48        32.28        11.70         3.88        35.41 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 
       15.12        19.86         6.21        24.59        44.55        39.58 
TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 
        2.73        12.39        31.07        15.19        17.79        55.17 
TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 
        2.47        11.18        11.38        11.54        34.06        32.25 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 
       31.04        21.40         8.42        38.93        28.70        30.35 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 
       19.56         8.71         7.79         8.12         8.28         8.19 
TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 
       43.82        35.28        35.28        13.61        68.91       107.18 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 
       91.40        74.27        66.64        70.39        61.81        67.99 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       69.01        43.36        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       47.38        48.33        47.84        44.94        44.84        37.08 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       34.06        29.98        21.14        14.89        13.81         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
        6.41         6.08        10.88         6.61         7.36         6.05 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 
        5.92         6.84         4.70         4.21         5.33        54.61 
TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 
       87.06        61.71        29.39        98.04        20.68        22.39 
TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 
       70.82        82.88        52.44        38.17        49.22         4.24 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
       54.31        37.61        38.37        13.97        32.84        16.57 
TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
        4.21         4.41         4.77         4.14         2.56         3.88 
TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 
        3.09        14.24        12.23         8.58        10.78         8.75 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 
        6.28        23.05        25.94        26.20        72.20        27.48 
TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
       25.38        19.07        16.67         2.93         2.66        47.54 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       42.51        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1113 TCGA-23-1114 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       31.20        68.68        33.30        86.01       129.96         4.27 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 
        6.38        39.09        33.47        58.13         0.53        24.95 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 
      115.89        87.48        77.00        49.84         2.76         4.70 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1418 
       22.32        54.08        47.41         6.31         6.38         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 
        7.86         0.76         6.25         6.02         5.95         5.36 
TCGA-24-1427 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 
        4.80        28.34        19.17        18.67        43.53        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 
       12.46        45.14       105.99         9.11         3.42        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 
       26.96        57.37        64.27        16.21        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1557 TCGA-24-1558 
       51.91        41.39        58.09        88.50        39.88        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 
       90.15        48.33        38.24         8.32         3.48         3.72 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
        4.37        11.28         5.75         5.49         9.80        22.65 
TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 
       30.21        16.41        11.05        81.11         4.87       151.99 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
       44.84        58.16        34.82       109.68        14.43        53.95 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 
       18.48        28.18        64.01        44.48        57.07        36.16 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
        0.79         0.36        47.54        31.63        70.45        44.58 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 
       67.36        36.23        16.64        33.11        55.86        53.26 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 
        1.02        26.93        31.99        51.06        37.02         1.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
       34.98        65.00        36.95        33.96         2.99        12.00 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 
       18.58        18.02        15.78         0.36        20.58         7.86 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 
        0.30        56.94        60.59        35.54        51.22        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       24.99        18.05        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
       38.04         3.02        12.00        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1690 TCGA-29-1691 
        2.96        29.00        30.97        26.96        44.71        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 
      101.75        38.53         0.79        33.70        31.17        68.28 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
        0.53        16.90        18.64        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 
       29.23        34.62        17.00        85.68        62.93        39.09 
TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 
       31.23        22.98        24.36        22.52        17.29        12.36 
TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 
       11.84        12.30        14.93         8.35         7.20         5.36 
TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
       34.62        86.17        65.00        62.47        45.11         4.87 
TCGA-29-2431 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 
       42.25        11.47         9.76        38.07        51.91        36.26 
TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 
        2.47        15.68         0.26        48.07        44.91        34.78 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
        6.08        36.62         1.18        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 
       48.79        45.57        30.18        18.77        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1570 TCGA-36-1571 
       42.51        44.09         2.17        28.73        21.53        22.85 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
       22.55         8.55        30.05        25.74        27.85        24.23 
TCGA-36-1581 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       24.69        33.01        29.49        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       23.80        21.60         2.24        20.98        18.31        20.52 
TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 
       14.17         6.05        16.14        11.47        14.30         9.07 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 
        9.44         7.56         7.46         7.63         1.48        24.03 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 
       11.38        21.14         1.74        22.32        28.96        25.05 
TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 
       25.02       180.16        80.12        22.32       116.12         9.40 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 
       34.39         2.14         5.39        44.78        11.11         8.05 
TCGA-61-1724 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 
       20.94        18.54        27.88         4.34        31.76        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 
       48.79        44.84        35.80         2.43        33.67        43.69 
TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
        1.41         8.42         5.79        11.41        13.02         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
       34.13        31.30        37.02        42.48        48.92        56.58 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       67.73        43.43        15.75        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 
       14.50        17.98         3.98        30.61        39.85        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
        1.18        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
       71.74        61.64        58.39        60.62        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 
        6.48        76.83        20.68        44.52       125.72        22.22 
TCGA-61-2613 
       31.07 

      5Q GAIN CNV 5Q GAIN WILD-TYPE 
             0.82              0.26 
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
           119.08            180.16 
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
            28.37             28.18 
[1] "0.8 - 119.1 (28.4)" "0.3 - 180.2 (28.2)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
[1] "hr=" "1.3"
D10V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  5Q GAIN CNV             0    30                1
  5Q GAIN WILD-TYPE       2   518                1
D10V3, multiclass
                  clus
vv                 5Q GAIN CNV 5Q GAIN WILD-TYPE
  OMENTUM                    0                 2
  OVARY                     30               518
  PERITONEUM OVARY           1                 1
D10V4, continuous
                   vv
clus                I+II III  IV
  5Q GAIN CNV          0   7   4
  5Q GAIN WILD-TYPE    4 126  30
D10V5, multiclass
      clus
vv     5Q GAIN CNV 5Q GAIN WILD-TYPE
  I+II           0                 4
  III            7               126
  IV             4                30
D10V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN CNV          0   33
  5Q GAIN WILD-TYPE    3  526
     clus
vv    5Q GAIN CNV 5Q GAIN WILD-TYPE
  NO            0                 3
  YES          33               526
                   vv
clus                R0 R1 R2
  5Q GAIN CNV        0  5  0
  5Q GAIN WILD-TYPE 14 21  2
D10V7, multiclass
    clus
vv   5Q GAIN CNV 5Q GAIN WILD-TYPE
  R0           0                14
  R1           5                21
  R2           0                 2

Clustering(11) Variable = 6p gain
D11V1, survival
                   sevent
clus2                 0   1
  6P GAIN CNV        62  54
  6P GAIN WILD-TYPE 201 230
      6P GAIN CNV 6P GAIN WILD-TYPE 
              116               431 
      6P GAIN CNV 6P GAIN WILD-TYPE 
               54               230 
$`6P GAIN CNV`
TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1349 TCGA-04-1362 TCGA-04-1364 
       18.51        65.49        63.06        21.57        44.32        33.67 
TCGA-04-1525 TCGA-09-0364 TCGA-09-0366 TCGA-09-1662 TCGA-09-1665 TCGA-09-1667 
       38.37        29.16        57.73        89.33        41.59        61.87 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1674 TCGA-09-2049 TCGA-09-2051 TCGA-09-2054 
       55.36        30.48         8.55       112.37        63.09        20.91 
TCGA-10-0930 TCGA-10-0933 TCGA-13-0717 TCGA-13-0724 TCGA-13-0760 TCGA-13-0764 
       33.24        11.70        24.59         2.73        11.54        31.04 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0795 TCGA-13-0800 TCGA-13-0886 TCGA-13-0920 
       36.72        28.70        19.56         8.12        74.27        13.81 
TCGA-13-0923 TCGA-13-1407 TCGA-13-1488 TCGA-13-1496 TCGA-13-1499 TCGA-13-1510 
        6.41         6.05        70.82         4.24        38.37         2.56 
TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 TCGA-20-0990 TCGA-20-1685 TCGA-20-1686 
       14.24         8.58        10.78        25.94        16.67         2.93 
TCGA-23-1023 TCGA-23-1031 TCGA-23-1110 TCGA-23-1114 TCGA-23-1120 TCGA-23-1124 
       40.54        18.87        54.51        68.68         4.27        58.13 
TCGA-23-1809 TCGA-23-2077 TCGA-23-2079 TCGA-24-0982 TCGA-24-1417 TCGA-24-1423 
        0.53       115.89        91.66        22.32         7.82         6.25 
TCGA-24-1424 TCGA-24-1469 TCGA-24-1474 TCGA-24-1558 TCGA-24-1563 TCGA-24-1604 
        6.02         9.11        22.19        19.53        47.70        88.34 
TCGA-24-2026 TCGA-24-2254 TCGA-24-2261 TCGA-24-2281 TCGA-25-1317 TCGA-25-1319 
       34.82        57.07         0.79        44.58         1.02        65.00 
TCGA-25-1323 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 
       12.00        35.54        14.93        24.99        18.05        85.05 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-29-1695 TCGA-29-1698 TCGA-29-1702 
       42.02         2.96        29.00         0.79        68.28        18.64 
TCGA-29-1710 TCGA-29-1764 TCGA-29-1770 TCGA-29-1774 TCGA-29-1778 TCGA-29-2414 
       29.23        62.93        24.36        17.29        14.93        86.17 
TCGA-29-2425 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1576 
       65.00         6.71        42.51        44.09         2.17        30.05 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2545 TCGA-36-2552 TCGA-42-2593 TCGA-57-1582 
       24.69        35.05        18.31        11.47         1.48        24.03 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1993 TCGA-61-1722 TCGA-61-1730 TCGA-61-1741 
        1.74        22.32        25.05         8.05         4.34        33.67 
TCGA-61-1743 TCGA-61-1907 TCGA-61-1915 TCGA-61-1918 TCGA-61-1919 TCGA-61-1998 
       43.69        31.30        67.73        15.75        38.17         5.52 
TCGA-61-2003 TCGA-61-2009 TCGA-61-2088 TCGA-61-2097 TCGA-61-2098 TCGA-61-2113 
        3.98        39.85         4.77        60.62        65.49        22.22 
TCGA-61-2612 TCGA-61-2614 
        6.35         8.58 

$`6P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1343 TCGA-04-1348 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 
       11.87        48.76        63.98        65.46        49.28        32.52 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 
       76.54        71.47        82.36        56.55        41.59        19.99 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
      119.08        29.06        84.20        55.40        48.89        27.88 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 
       28.64        64.64        36.23        31.86        47.70        45.34 
TCGA-09-0365 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1664 
        9.47        17.95        35.54         9.96        38.43        74.89 
TCGA-09-1666 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 TCGA-09-2043 
       57.57        17.98         5.85         3.02        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2050 TCGA-09-2053 TCGA-09-2055 
        6.12        35.15         4.50        71.11        39.75        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0931 
       12.46        54.31        25.91        81.47        18.48        32.28 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 
        3.88        35.41        35.80        15.12        19.86         6.21 
TCGA-13-0720 TCGA-13-0723 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       44.55        39.58        12.39        31.07        15.19        17.79 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0761 TCGA-13-0762 
       55.17         2.47        11.18        11.38        34.06        32.25 
TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 
       21.40         8.42        38.93        30.35         8.71         7.79 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.28         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 
       68.91       107.18        91.40        66.64        70.39        61.81 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       67.99        69.01        43.36        57.47        56.15        57.07 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 
       19.36        47.38        48.33        47.84        44.94        44.84 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 
       37.08        27.68        34.06        29.98        21.14        14.89 
TCGA-13-0921 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 
        4.64         6.08        10.88         6.61         7.36         5.92 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        6.84         4.70         4.21         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1489 
       61.71        29.39        98.04        20.68        22.39        82.88 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 
       52.44        73.55        38.17        49.22        54.31        37.61 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 
       13.97        32.84        16.57         4.21         4.41         4.77 
TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2065 TCGA-13-2071 
        4.14         3.88         3.09        12.23         8.75         6.28 
TCGA-20-0987 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 
       23.05        26.20        72.20        27.48        25.38        19.07 
TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
        2.66        47.54        42.51        15.39        26.83        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1032 TCGA-23-1109 TCGA-23-1111 
       49.41         8.81        29.10         2.24        51.35         3.22 
TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1121 
       31.20         4.57        33.30        86.01       129.96         6.38 
TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 TCGA-23-2078 TCGA-23-2081 TCGA-23-2084 
       39.09        33.47        24.95        87.48        77.00        49.84 
TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
        2.76         4.70         4.50         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       21.80        41.56         7.66        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1425 
        6.31         6.38         7.99         7.86         0.76         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 
        5.36         4.80        17.36        28.34        19.17        18.67 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 
       43.53         8.55        72.92        12.46        45.14       105.99 
TCGA-24-1470 TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 
        3.42         1.18        26.96        57.37        64.27        16.21 
TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 
       56.58        41.06        51.91        41.39        58.09        88.50 
TCGA-24-1556 TCGA-24-1557 TCGA-24-1560 TCGA-24-1562 TCGA-24-1564 TCGA-24-1565 
       70.62        39.88        44.09        45.50        25.87        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       17.23        90.15        48.33        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
        3.72         3.81         4.37        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        9.80        22.65        30.21        16.41        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 
        4.87       151.99        44.84        58.16       109.68        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2260 
       53.95        18.48        28.18        64.01        44.48        36.16 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2288 TCGA-24-2289 
        0.36        47.54        31.63        70.45         0.82        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 
       36.23        16.64        33.11        55.86        53.26         1.02 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 TCGA-25-1320 
       26.93        31.99        51.06        37.02        34.98        36.95 
TCGA-25-1321 TCGA-25-1322 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
       33.96         2.99         2.96        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 
        0.36        20.58         7.86         0.30        56.94        60.59 
TCGA-25-1635 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 
       51.22        13.02        49.05         1.02        38.04         3.02 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 
       12.00        45.01        19.99        30.97        26.96        78.87 
TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 
       44.71        47.18       101.75        38.53        33.70        31.17 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1711 
        0.53        16.90        59.67        18.25        41.95        34.62 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       17.00        85.68        66.77        39.09        31.23        22.98 
TCGA-29-1771 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 
       22.52        12.36        11.84        12.30         8.35         7.20 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 
        5.36        34.62        62.47        45.11         4.87        42.25 
TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 
       11.84        11.47         9.76        38.07        51.91        36.26 
TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 
        2.47        15.68         0.26        48.07        44.91        34.78 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
        6.08        36.62         1.18        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-36-1568 
       48.79        45.57        30.18        18.77        22.45        28.73 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1577 
       29.06        21.53        22.85        22.55         8.55        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       27.85        24.23        33.01        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2547 
       25.08        23.80        21.60         2.24        20.98        20.52 
TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 
       14.17         6.05        16.14        14.30         9.07         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1583 TCGA-57-1584 TCGA-57-1992 
        7.56         7.46         7.63        11.38        21.14        28.96 
TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 
       25.02       180.16        80.12        22.32       116.12         9.40 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1724 
       34.39         2.14         5.39        44.78        11.11        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 
       31.40        18.54        27.88        31.76        28.47        48.79 
TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 
       44.84        35.80         2.43         1.41         8.42         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 TCGA-61-1911 
       11.41        13.02         9.07        34.13        37.02        42.48 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1917 TCGA-61-1995 TCGA-61-2000 TCGA-61-2002 
       48.92        56.58        43.43         1.97        14.50        17.98 
TCGA-61-2008 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
       30.61        30.64         1.18        45.96        45.40         4.80 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2101 TCGA-61-2102 
       51.72        71.74        61.64        58.39        55.50         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2613 
       76.83        20.68        44.52       125.72        31.07 

      6P GAIN CNV 6P GAIN WILD-TYPE 
             0.53              0.26 
      6P GAIN CNV 6P GAIN WILD-TYPE 
           115.89            180.16 
      6P GAIN CNV 6P GAIN WILD-TYPE 
            24.64             28.73 
[1] "0.5 - 115.9 (24.6)" "0.3 - 180.2 (28.7)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
      "6P GAIN CNV"       "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "6P GAIN CNV"       "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
      "6P GAIN CNV"       "6P GAIN CNV"       "6P GAIN CNV"       "6P GAIN CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
      "6P GAIN CNV"       "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "6P GAIN CNV"       "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
      "6P GAIN CNV"       "6P GAIN CNV"       "6P GAIN CNV"       "6P GAIN CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
      "6P GAIN CNV"       "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "6P GAIN CNV"       "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
      "6P GAIN CNV"       "6P GAIN CNV"       "6P GAIN CNV"       "6P GAIN CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
[1] "hr=" "1.1"
D11V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  6P GAIN CNV             0   117                1
  6P GAIN WILD-TYPE       2   431                1
D11V3, multiclass
                  clus
vv                 6P GAIN CNV 6P GAIN WILD-TYPE
  OMENTUM                    0                 2
  OVARY                    117               431
  PERITONEUM OVARY           1                 1
D11V4, continuous
                   vv
clus                I+II III  IV
  6P GAIN CNV          1  27   7
  6P GAIN WILD-TYPE    3 106  27
D11V5, multiclass
      clus
vv     6P GAIN CNV 6P GAIN WILD-TYPE
  I+II           1                 3
  III           27               106
  IV             7                27
D11V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN CNV          0  120
  6P GAIN WILD-TYPE    3  439
     clus
vv    6P GAIN CNV 6P GAIN WILD-TYPE
  NO            0                 3
  YES         120               439
                   vv
clus                R0 R1 R2
  6P GAIN CNV        3  5  1
  6P GAIN WILD-TYPE 11 21  1
D11V7, multiclass
    clus
vv   6P GAIN CNV 6P GAIN WILD-TYPE
  R0           3                11
  R1           5                21
  R2           1                 1

Clustering(12) Variable = 6q gain
D12V1, survival
                   sevent
clus2                 0   1
  6Q GAIN CNV        33  26
  6Q GAIN WILD-TYPE 230 258
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
               59               488 
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
               26               258 
$`6Q GAIN CNV`
TCGA-04-1342 TCGA-04-1346 TCGA-09-0364 TCGA-09-1665 TCGA-09-1667 TCGA-09-1668 
       18.51        65.49        29.16        41.59        61.87        55.36 
TCGA-09-1669 TCGA-09-1674 TCGA-09-2051 TCGA-10-0930 TCGA-10-0933 TCGA-13-0723 
       30.48         8.55        63.09        33.24        11.70        39.58 
TCGA-13-0724 TCGA-13-0760 TCGA-13-0764 TCGA-13-0795 TCGA-13-0800 TCGA-13-0920 
        2.73        11.54        31.04        19.56         8.12        13.81 
TCGA-13-1488 TCGA-13-1496 TCGA-13-1499 TCGA-13-2057 TCGA-13-2061 TCGA-23-1110 
       70.82         4.24        38.37        14.24        10.78        54.51 
TCGA-23-1111 TCGA-23-1114 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2079 
        3.22        68.68        58.13         0.53       115.89        91.66 
TCGA-24-1424 TCGA-24-1469 TCGA-24-1474 TCGA-24-1558 TCGA-24-1563 TCGA-24-1850 
        6.02         9.11        22.19        19.53        47.70         5.49 
TCGA-24-2281 TCGA-25-1871 TCGA-25-1877 TCGA-25-2404 TCGA-29-1695 TCGA-29-1698 
       44.58        24.99        18.05        29.00         0.79        68.28 
TCGA-29-1702 TCGA-29-1764 TCGA-29-1770 TCGA-29-1774 TCGA-29-1778 TCGA-29-2425 
       18.64        62.93        24.36        17.29        14.93        65.00 
TCGA-30-1862 TCGA-36-2552 TCGA-57-1582 TCGA-57-1993 TCGA-61-1741 TCGA-61-1743 
        6.08        11.47        24.03        25.05        33.67        43.69 
TCGA-61-1915 TCGA-61-2003 TCGA-61-2088 TCGA-61-2113 TCGA-61-2612 
       67.73         3.98         4.77        22.22         6.35 

$`6Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1343 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 
       11.87        63.06        48.76        21.57        63.98        65.46 
TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       49.28        32.52        44.32        33.67        76.54        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       82.36        56.55        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
       29.06        84.20        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0365 
       64.64        36.23        31.86        47.70        45.34         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       57.73        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1666 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 
       74.89        57.57        17.98         5.85         3.02        97.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
        6.15         6.12        35.15         4.50       112.37        71.11 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       39.75        20.91        26.93        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0931 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       81.47        18.48        32.28         3.88        35.41        35.80 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0725 
       15.12        19.86         6.21        24.59        44.55        12.39 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 
       31.07        15.19        17.79        55.17         2.47        11.18 
TCGA-13-0758 TCGA-13-0761 TCGA-13-0762 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       11.38        34.06        32.25        21.40         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 
       36.72        28.70        30.35         8.71         7.79         8.28 
TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.19        43.82        35.28        35.28        13.61        68.91 
TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 
      107.18        91.40        74.27        66.64        70.39        61.81 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       67.99        69.01        43.36        57.47        56.15        57.07 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 
       19.36        47.38        48.33        47.84        44.94        44.84 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 
       37.08        27.68        34.06        29.98        21.14        14.89 
TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 
        4.64         6.41         6.08        10.88         6.61         7.36 
TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 
        6.05         5.92         6.84         4.70         4.21         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
       54.61        87.06        61.71        29.39        98.04        20.68 
TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 
       22.39        82.88        52.44        73.55        38.17        49.22 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       54.31        37.61        13.97        32.84        16.57         4.21 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
        4.41         4.77         4.14         2.56         3.88         3.09 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 
       12.23         8.58         8.75         6.28        23.05        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 
       26.20        72.20        27.48        25.38        19.07        16.67 
TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 
        2.93         2.66        47.54        42.51        40.54        15.39 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       26.83        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
        2.24        51.35        31.20         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 
      129.96         4.27         6.38        39.09        33.47        24.95 
TCGA-23-2078 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
       87.48        77.00        49.84         2.76         4.70         4.50 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       22.32        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 
        7.82         7.99         7.86         0.76         6.25         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 
        5.36         4.80        17.36        28.34        19.17        18.67 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 
       43.53         8.55        72.92        12.46        45.14       105.99 
TCGA-24-1470 TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 
        3.42         1.18        26.96        57.37        64.27        16.21 
TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 
       56.58        41.06        51.91        41.39        58.09        88.50 
TCGA-24-1556 TCGA-24-1557 TCGA-24-1560 TCGA-24-1562 TCGA-24-1564 TCGA-24-1565 
       70.62        39.88        44.09        45.50        25.87        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 
       17.23        90.15        88.34        48.33        38.24         8.32 
TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 
        3.48         3.72         3.81         4.37        11.28         5.75 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        9.80        22.65        30.21        16.41        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 
        4.87       151.99        44.84        58.16        34.82       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
       14.43        53.95        18.48        28.18        64.01        44.48 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       57.07        36.16         0.79         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 
       70.45         0.82        67.36        36.23        16.64        33.11 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       55.86        53.26         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       37.02         1.02        34.98        65.00        36.95        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
        2.99        12.00         2.96        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 
        0.36        20.58         7.86         0.30        56.94        60.59 
TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       35.54        51.22        14.93        85.05        13.02        49.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
        1.02        38.04         3.02        12.00        45.01        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
       42.02         2.96        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1699 
       47.18       101.75        38.53        33.70        31.17         0.53 
TCGA-29-1701 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 
       16.90        59.67        18.25        41.95        29.23        34.62 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       17.00        85.68        66.77        39.09        31.23        22.98 
TCGA-29-1771 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 
       22.52        12.36        11.84        12.30         8.35         7.20 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
        5.36        34.62        86.17        62.47        45.11         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
       42.25        11.84        11.47         9.76        38.07        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 
       36.26         2.47        15.68         0.26        48.07        44.91 
TCGA-30-1861 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
       34.78        36.62         1.18        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 
       48.79        45.57        30.18        18.77        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       42.51        44.09         2.17        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       22.85        22.55         8.55        30.05        25.74        27.85 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       24.23        24.69        35.05        33.01        29.49        29.79 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       25.91        25.08        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-42-2582 
       18.31        20.52        14.17         6.05        16.14        14.30 
TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 
        9.07         9.44         7.56         7.46         7.63         1.48 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1994 
       11.38        21.14         1.74        22.32        28.96        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 
      180.16        80.12        22.32       116.12         9.40        34.39 
TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
        2.14         5.39        44.78        11.11         8.05        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 
       31.40        18.54        27.88         4.34        31.76        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1895 TCGA-61-1899 
       48.79        44.84        35.80         2.43         1.41         8.42 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 
        5.79        11.41        13.02         9.07        34.13        31.30 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1917 TCGA-61-1918 
       37.02        42.48        48.92        56.58        43.43        15.75 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 
       38.17         1.97         5.52        14.50        17.98        30.61 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
       39.85        30.64         1.18        45.96        45.40         4.80 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 
       51.72        71.74        61.64        58.39        60.62        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
       55.50         6.48        76.83        20.68        44.52       125.72 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

      6Q GAIN CNV 6Q GAIN WILD-TYPE 
             0.53              0.26 
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
           115.89            180.16 
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
            24.03             28.67 
[1] "0.5 - 115.9 (24.0)" "0.3 - 180.2 (28.7)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
      "6Q GAIN CNV"       "6Q GAIN CNV"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV"       "6Q GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "6Q GAIN CNV"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
      "6Q GAIN CNV"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
      "6Q GAIN CNV"       "6Q GAIN CNV"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV"       "6Q GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "6Q GAIN CNV"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
      "6Q GAIN CNV"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
      "6Q GAIN CNV"       "6Q GAIN CNV"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV"       "6Q GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "6Q GAIN CNV"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
      "6Q GAIN CNV"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D12V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  6Q GAIN CNV             0    60                0
  6Q GAIN WILD-TYPE       2   488                2
D12V3, multiclass
                  clus
vv                 6Q GAIN CNV 6Q GAIN WILD-TYPE
  OMENTUM                    0                 2
  OVARY                     60               488
  PERITONEUM OVARY           0                 2
D12V4, continuous
                   vv
clus                I+II III  IV
  6Q GAIN CNV          1  12   3
  6Q GAIN WILD-TYPE    3 121  31
D12V5, multiclass
      clus
vv     6Q GAIN CNV 6Q GAIN WILD-TYPE
  I+II           1                 3
  III           12               121
  IV             3                31
D12V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN CNV          0   62
  6Q GAIN WILD-TYPE    3  497
     clus
vv    6Q GAIN CNV 6Q GAIN WILD-TYPE
  NO            0                 3
  YES          62               497
                   vv
clus                R0 R1 R2
  6Q GAIN CNV        2  2  0
  6Q GAIN WILD-TYPE 12 24  2
D12V7, multiclass
    clus
vv   6Q GAIN CNV 6Q GAIN WILD-TYPE
  R0           2                12
  R1           2                24
  R2           0                 2

Clustering(13) Variable = 7p gain
D13V1, survival
                   sevent
clus2                 0   1
  7P GAIN CNV        56  65
  7P GAIN WILD-TYPE 207 219
      7P GAIN CNV 7P GAIN WILD-TYPE 
              121               426 
      7P GAIN CNV 7P GAIN WILD-TYPE 
               65               219 
$`7P GAIN CNV`
TCGA-04-1337 TCGA-04-1342 TCGA-04-1346 TCGA-04-1351 TCGA-04-1364 TCGA-04-1367 
        2.01        18.51        65.49        65.46        33.67        71.47 
TCGA-04-1542 TCGA-04-1646 TCGA-04-1649 TCGA-04-1652 TCGA-09-0365 TCGA-09-0367 
       84.20        27.88        64.64        31.86         9.47        17.95 
TCGA-09-1661 TCGA-09-1665 TCGA-09-1672 TCGA-09-1674 TCGA-09-2043 TCGA-09-2045 
       38.43        41.59         5.85         8.55         6.15        35.15 
TCGA-09-2049 TCGA-09-2054 TCGA-10-0926 TCGA-13-0717 TCGA-13-0730 TCGA-13-0757 
      112.37        20.91        25.91        24.59        17.79        11.18 
TCGA-13-0760 TCGA-13-0807 TCGA-13-0883 TCGA-13-0888 TCGA-13-0899 TCGA-13-0901 
       11.54        13.61        68.91        70.39        56.15        19.36 
TCGA-13-0904 TCGA-13-0921 TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 
       48.33         4.64         6.05         5.92         4.70         4.21 
TCGA-13-1482 TCGA-13-1484 TCGA-13-1485 TCGA-13-1496 TCGA-13-1504 TCGA-13-1509 
       61.71        98.04        20.68         4.24        16.57         4.14 
TCGA-13-2059 TCGA-13-2060 TCGA-20-0991 TCGA-20-1686 TCGA-23-1024 TCGA-23-1032 
       12.23         8.58        26.20         2.93        15.39         2.24 
TCGA-23-1111 TCGA-23-1116 TCGA-23-1121 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 
        3.22         4.57         6.38        58.13         0.53        24.95 
TCGA-23-2079 TCGA-23-2081 TCGA-24-0980 TCGA-24-1424 TCGA-24-1428 TCGA-24-1431 
       91.66        77.00         7.66         6.02        17.36        19.17 
TCGA-24-1474 TCGA-24-1557 TCGA-24-1558 TCGA-24-1845 TCGA-24-2019 TCGA-24-2020 
       22.19        39.88        19.53         3.81         4.87       151.99 
TCGA-24-2026 TCGA-24-2030 TCGA-24-2038 TCGA-24-2261 TCGA-24-2267 TCGA-24-2288 
       34.82        53.95        44.48         0.79        47.54         0.82 
TCGA-24-2295 TCGA-25-1312 TCGA-25-1320 TCGA-25-1323 TCGA-25-1627 TCGA-25-1628 
       33.11         1.02        36.95        12.00         0.36        20.58 
TCGA-25-1870 TCGA-25-1871 TCGA-25-2400 TCGA-29-1695 TCGA-29-1698 TCGA-29-1699 
       14.93        24.99        42.02         0.79        68.28         0.53 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1775 TCGA-29-1778 TCGA-29-1783 TCGA-29-2428 
       41.95        29.23        12.36        14.93         7.20        45.11 
TCGA-29-2429 TCGA-29-2432 TCGA-29-2434 TCGA-30-1853 TCGA-30-1856 TCGA-30-1862 
        4.87        11.84        11.47        36.26        15.68         6.08 
TCGA-30-1867 TCGA-36-2547 TCGA-36-2548 TCGA-42-2582 TCGA-42-2587 TCGA-59-2348 
        1.18        20.52        14.17        14.30         9.07       180.16 
TCGA-59-2349 TCGA-59-2372 TCGA-61-1730 TCGA-61-1734 TCGA-61-1737 TCGA-61-1743 
       80.12        44.78         4.34        28.47        44.84        43.69 
TCGA-61-1899 TCGA-61-1904 TCGA-61-1907 TCGA-61-1911 TCGA-61-2003 TCGA-61-2088 
        8.42         9.07        31.30        42.48         3.98         4.77 
TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2110 TCGA-61-2113 
       65.49        55.50         6.48        76.83        44.52        22.22 
TCGA-61-2614 
        8.58 

$`7P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1343 
       40.24        41.00         1.81        49.15        46.62        11.87 
TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 TCGA-04-1361 
       63.06        48.76        21.57        63.98        49.28        32.52 
TCGA-04-1362 TCGA-04-1365 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 
       44.32        76.54        82.36        56.55        41.59        19.99 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 
       38.37       119.08        29.06        55.40        48.89        28.64 
TCGA-04-1651 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0366 TCGA-09-0369 
       36.23        47.70        45.34        29.16        57.73        35.54 
TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
        9.96        89.33        74.89        57.57        61.87        55.36 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 TCGA-09-1675 TCGA-09-2044 TCGA-09-2048 
       30.48        17.98         3.02        97.55         6.12         4.50 
TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       71.11        63.09        39.75        26.93        12.46        54.31 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       81.47        18.48        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 
       35.41        35.80        15.12        19.86         6.21        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0751 
       39.58         2.73        12.39        31.07        15.19        55.17 
TCGA-13-0755 TCGA-13-0758 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 
        2.47        11.38        34.06        32.25        31.04        21.40 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 
        8.42        38.93        36.72        28.70        30.35        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 
        8.71         7.79         8.12         8.28         8.19        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       35.28        35.28       107.18        91.40        74.27        66.64 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 
       61.81        67.99        69.01        43.36        57.47        57.07 
TCGA-13-0903 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       47.38        47.84        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 
       34.06        29.98        21.14        14.89        13.81         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1409 TCGA-13-1412 
        6.08        10.88         6.61         7.36         6.84         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1483 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 
       54.61        87.06        29.39        22.39        70.82        82.88 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 
       52.44        73.55        38.17        49.22        54.31        37.61 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 
       38.37        13.97        32.84         4.21         4.41         4.77 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2061 TCGA-13-2065 
        2.56         3.88         3.09        14.24        10.78         8.75 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 
        6.28        23.05        25.94        72.20        27.48        25.38 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 
       19.07        16.67         2.66        47.54        42.51        40.54 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       26.83        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 TCGA-23-1117 TCGA-23-1118 
       51.35        54.51        31.20        68.68        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1122 TCGA-23-1123 TCGA-23-2077 TCGA-23-2078 
      129.96         4.27        39.09        33.47       115.89        87.48 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
       49.84         2.76         4.70         4.50         7.63        19.63 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 
       11.64        21.80        41.56        22.32        54.08        63.55 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 
       47.41         6.31         6.38         7.82         7.99         7.86 
TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1430 
        0.76         6.25         5.95         5.36         4.80        28.34 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 
       18.67        43.53         8.55        72.92        12.46        45.14 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 
      105.99         9.11         3.42         1.18        26.96        57.37 
TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
       64.27        16.21        56.58        41.06        51.91        41.39 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 
       58.09        88.50        70.62        44.09        45.50        47.70 
TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 
       25.87        10.26        17.23        90.15        88.34        48.33 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 TCGA-24-1847 
       38.24         8.32         3.48         3.72         4.37        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
        5.75         5.49         9.80        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 
       11.05        81.11        44.84        58.16       109.68        14.43 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2254 TCGA-24-2260 TCGA-24-2262 
       18.48        28.18        64.01        57.07        36.16         0.36 
TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       31.63        70.45        44.58        67.36        36.23        16.64 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       55.86        53.26        26.93        31.99        51.06        37.02 
TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 TCGA-25-1322 TCGA-25-1329 
        1.02        34.98        65.00        33.96         2.99         2.96 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 
       18.58        18.02        15.78         7.86         0.30        56.94 
TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
       60.59        35.54        51.22        18.05        85.05        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
       49.05         1.02        38.04         3.02        12.00        45.01 
TCGA-25-2399 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 
       19.99         2.96        29.00        30.97        26.96        78.87 
TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 
       44.71        47.18       101.75        38.53        33.70        31.17 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1711 TCGA-29-1761 
       16.90        18.64        59.67        18.25        34.62        17.00 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       85.68        66.77        62.93        39.09        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 
       24.36        22.52        17.29        11.84        12.30         8.35 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2431 
        5.36        34.62        86.17        65.00        62.47        42.25 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1857 TCGA-30-1859 
        9.76        38.07        51.91         2.47         0.26        48.07 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
       44.91        34.78        36.62        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 
       48.79        45.57        30.18        18.77        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       42.51        44.09         2.17        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       22.85        22.55         8.55        30.05        25.74        27.85 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       24.23        24.69        35.05        33.01        29.49        29.79 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       25.91        25.08        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2588 TCGA-42-2589 
       18.31         6.05        16.14        11.47         9.44         7.56 
TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 
        7.46         7.63         1.48        24.03        11.38        21.14 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2350 
        1.74        22.32        28.96        25.05        25.02        22.32 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 
      116.12         9.40        34.39         2.14         5.39        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 
        8.05        20.94        31.40        18.54        27.88        31.76 
TCGA-61-1736 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1895 TCGA-61-1900 
       48.79        35.80         2.43        33.67         1.41         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1906 TCGA-61-1910 TCGA-61-1913 TCGA-61-1914 
       11.41        13.02        34.13        37.02        48.92        56.58 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       67.73        43.43        15.75        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 
       14.50        17.98        30.61        39.85        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.96        45.40         4.80        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2097 TCGA-61-2109 TCGA-61-2111 TCGA-61-2612 TCGA-61-2613 
       58.39        60.62        20.68       125.72         6.35        31.07 

      7P GAIN CNV 7P GAIN WILD-TYPE 
             0.36              0.26 
      7P GAIN CNV 7P GAIN WILD-TYPE 
           180.16            129.96 
      7P GAIN CNV 7P GAIN WILD-TYPE 
           19.170            30.015 
[1] "0.4 - 180.2 (19.2)" "0.3 - 130.0 (30.0)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
[1] "hr=" "1.2"
D13V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  7P GAIN CNV             0   122                0
  7P GAIN WILD-TYPE       2   426                2
D13V3, multiclass
                  clus
vv                 7P GAIN CNV 7P GAIN WILD-TYPE
  OMENTUM                    0                 2
  OVARY                    122               426
  PERITONEUM OVARY           0                 2
D13V4, continuous
                   vv
clus                I+II III  IV
  7P GAIN CNV          2  24   8
  7P GAIN WILD-TYPE    2 109  26
D13V5, multiclass
      clus
vv     7P GAIN CNV 7P GAIN WILD-TYPE
  I+II           2                 2
  III           24               109
  IV             8                26
D13V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN CNV          0  124
  7P GAIN WILD-TYPE    3  435
     clus
vv    7P GAIN CNV 7P GAIN WILD-TYPE
  NO            0                 3
  YES         124               435
                   vv
clus                R0 R1 R2
  7P GAIN CNV        4  7  0
  7P GAIN WILD-TYPE 10 19  2
D13V7, multiclass
    clus
vv   7P GAIN CNV 7P GAIN WILD-TYPE
  R0           4                10
  R1           7                19
  R2           0                 2

Clustering(14) Variable = 7q gain
D14V1, survival
                   sevent
clus2                 0   1
  7Q GAIN CNV        64  79
  7Q GAIN WILD-TYPE 199 205
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
              143               404 
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
               79               205 
$`7Q GAIN CNV`
TCGA-04-1337 TCGA-04-1342 TCGA-04-1347 TCGA-04-1351 TCGA-04-1364 TCGA-04-1514 
        2.01        18.51        63.06        65.46        33.67        56.55 
TCGA-04-1516 TCGA-04-1517 TCGA-04-1536 TCGA-04-1542 TCGA-04-1646 TCGA-04-1649 
       41.59        19.99        29.06        84.20        27.88        64.64 
TCGA-04-1652 TCGA-04-1655 TCGA-09-0365 TCGA-09-1661 TCGA-09-1665 TCGA-09-1672 
       31.86        45.34         9.47        38.43        41.59         5.85 
TCGA-09-1674 TCGA-09-2043 TCGA-09-2045 TCGA-10-0926 TCGA-10-0927 TCGA-13-0717 
        8.55         6.15        35.15        25.91        81.47        24.59 
TCGA-13-0724 TCGA-13-0757 TCGA-13-0760 TCGA-13-0762 TCGA-13-0795 TCGA-13-0803 
        2.73        11.18        11.54        32.25        19.56        43.82 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0885 TCGA-13-0888 TCGA-13-0899 
       35.28        13.61        68.91        91.40        70.39        56.15 
TCGA-13-0901 TCGA-13-0904 TCGA-13-0921 TCGA-13-1407 TCGA-13-1410 TCGA-13-1411 
       19.36        48.33         4.64         6.05         4.70         4.21 
TCGA-13-1412 TCGA-13-1482 TCGA-13-1484 TCGA-13-1485 TCGA-13-1496 TCGA-13-1504 
        5.33        61.71        98.04        20.68         4.24        16.57 
TCGA-13-1509 TCGA-13-2059 TCGA-13-2060 TCGA-20-0991 TCGA-20-1686 TCGA-23-1021 
        4.14        12.23         8.58        26.20         2.93        47.54 
TCGA-23-1024 TCGA-23-1031 TCGA-23-1032 TCGA-23-1111 TCGA-23-1121 TCGA-23-1809 
       15.39        18.87         2.24         3.22         6.38         0.53 
TCGA-23-2072 TCGA-23-2079 TCGA-23-2081 TCGA-24-1104 TCGA-24-1424 TCGA-24-1428 
       24.95        91.66        77.00        63.55         6.02        17.36 
TCGA-24-1431 TCGA-24-1436 TCGA-24-1474 TCGA-24-1546 TCGA-24-1548 TCGA-24-1557 
       19.17         8.55        22.19        64.27        16.21        39.88 
TCGA-24-1558 TCGA-24-1844 TCGA-24-1845 TCGA-24-2019 TCGA-24-2020 TCGA-24-2026 
       19.53         3.72         3.81         4.87       151.99        34.82 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2038 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 
       53.95        18.48        44.48         0.79         0.36        47.54 
TCGA-24-2295 TCGA-25-1312 TCGA-25-1314 TCGA-25-1320 TCGA-25-1323 TCGA-25-1623 
       33.11         1.02        31.99        36.95        12.00        18.58 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 TCGA-25-2400 
        0.36        20.58        14.93        24.99        85.05        42.02 
TCGA-25-2401 TCGA-29-1695 TCGA-29-1699 TCGA-29-1707 TCGA-29-1764 TCGA-29-1775 
        2.96         0.79         0.53        41.95        62.93        12.36 
TCGA-29-1778 TCGA-29-1783 TCGA-29-2428 TCGA-29-2429 TCGA-29-2432 TCGA-29-2434 
       14.93         7.20        45.11         4.87        11.84        11.47 
TCGA-30-1853 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-31-1944 TCGA-36-2529 
       36.26         6.08        36.62         1.18        45.57        35.05 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-42-2582 TCGA-42-2587 TCGA-42-2590 
       18.31        20.52        14.17        14.30         9.07         7.46 
TCGA-57-1586 TCGA-59-2348 TCGA-59-2349 TCGA-59-2351 TCGA-59-2372 TCGA-61-1725 
       22.32       180.16        80.12       116.12        44.78        31.40 
TCGA-61-1730 TCGA-61-1734 TCGA-61-1737 TCGA-61-1743 TCGA-61-1899 TCGA-61-1901 
        4.34        28.47        44.84        43.69         8.42        11.41 
TCGA-61-1904 TCGA-61-1911 TCGA-61-2003 TCGA-61-2088 TCGA-61-2098 TCGA-61-2101 
        9.07        42.48         3.98         4.77        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2110 TCGA-61-2113 TCGA-61-2614 
        6.48        76.83        44.52        22.22         8.58 

$`7Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1343 
       40.24        41.00         1.81        49.15        46.62        11.87 
TCGA-04-1346 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 TCGA-04-1361 
       65.49        48.76        21.57        63.98        49.28        32.52 
TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1525 TCGA-04-1530 
       44.32        76.54        71.47        82.36        38.37       119.08 
TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 TCGA-04-1651 TCGA-04-1654 TCGA-09-0364 
       55.40        48.89        28.64        36.23        47.70        29.16 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 
       57.73        17.95        35.54         9.96        89.33        74.89 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 
       57.57        61.87        55.36        30.48        17.98         3.02 
TCGA-09-1675 TCGA-09-2044 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
       97.55         6.12         4.50       112.37        71.11        63.09 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0928 
       39.75        20.91        26.93        12.46        54.31        18.48 
TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       33.24        32.28        11.70         3.88        35.41        35.80 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 TCGA-13-0723 TCGA-13-0725 
       15.12        19.86         6.21        44.55        39.58        12.39 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0758 
       31.07        15.19        17.79        55.17         2.47        11.38 
TCGA-13-0761 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       34.06        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 
       28.70        30.35         8.71         7.79         8.12         8.28 
TCGA-13-0802 TCGA-13-0804 TCGA-13-0884 TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 
        8.19        35.28       107.18        74.27        66.64        61.81 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 TCGA-13-0903 
       67.99        69.01        43.36        57.47        57.07        47.38 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       47.84        44.94        44.84        37.08        27.68        34.06 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 
       29.98        21.14        14.89        13.81         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 TCGA-13-1409 TCGA-13-1477 
       10.88         6.61         7.36         5.92         6.84        54.61 
TCGA-13-1481 TCGA-13-1483 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 
       87.06        29.39        22.39        70.82        82.88        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       73.55        38.17        49.22        54.31        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1510 
       13.97        32.84         4.21         4.41         4.77         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
        3.88         3.09        14.24        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 
       23.05        25.94        72.20        27.48        25.38        19.07 
TCGA-20-1685 TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 
       16.67         2.66        42.51        40.54        26.83        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1109 TCGA-23-1110 TCGA-23-1113 
       49.41         8.81        29.10        51.35        54.51        31.20 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       68.68         4.57        33.30        86.01       129.96         4.27 
TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-2077 TCGA-23-2078 TCGA-23-2084 
       39.09        33.47        58.13       115.89        87.48        49.84 
TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
        2.76         4.70         4.50         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1105 
       21.80        41.56         7.66        22.32        54.08        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 
        6.31         6.38         7.82         7.99         7.86         0.76 
TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1430 TCGA-24-1434 
        6.25         5.95         5.36         4.80        28.34        18.67 
TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 
       43.53        72.92        12.46        45.14       105.99         9.11 
TCGA-24-1470 TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 TCGA-24-1549 TCGA-24-1550 
        3.42         1.18        26.96        57.37        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1560 
       51.91        41.39        58.09        88.50        70.62        44.09 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 
       45.50        47.70        25.87        10.26        17.23        90.15 
TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1846 
       88.34        48.33        38.24         8.32         3.48         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 
       11.28         5.75         5.49         9.80        22.65        30.21 
TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 
       16.41        11.05        81.11        44.84        58.16       109.68 
TCGA-24-2029 TCGA-24-2035 TCGA-24-2036 TCGA-24-2254 TCGA-24-2260 TCGA-24-2271 
       14.43        28.18        64.01        57.07        36.16        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       70.45        44.58         0.82        67.36        36.23        16.64 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 
       55.86        53.26        26.93        51.06        37.02         1.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 TCGA-25-1322 TCGA-25-1329 TCGA-25-1625 
       34.98        65.00        33.96         2.99         2.96        18.02 
TCGA-25-1626 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 
       15.78         7.86         0.30        56.94        60.59        35.54 
TCGA-25-1635 TCGA-25-1877 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 
       51.22        18.05        13.02        49.05         1.02        38.04 
TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2404 TCGA-25-2408 
        3.02        12.00        45.01        19.99        29.00        30.97 
TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 
       26.96        78.87        44.71        47.18       101.75        38.53 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 
       33.70        31.17        68.28        16.90        18.64        59.67 
TCGA-29-1705 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 
       18.25        29.23        34.62        17.00        85.68        66.77 
TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 
       39.09        31.23        22.98        24.36        22.52        17.29 
TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 
       11.84        12.30         8.35         5.36        34.62        86.17 
TCGA-29-2425 TCGA-29-2427 TCGA-29-2431 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
       65.00        62.47        42.25         9.76        38.07        51.91 
TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 
        2.47        15.68         0.26        48.07        44.91        34.78 
TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1946 TCGA-31-1950 
       57.57        24.26        30.05        48.79        30.18        18.77 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 
       22.45         6.71        42.51        44.09         2.17        28.73 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 
       29.06        21.53        22.85        22.55         8.55        30.05 
TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2530 TCGA-36-2532 
       25.74        27.85        24.23        24.69        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.79        25.91        25.08        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2588 TCGA-42-2589 
       20.98         6.05        16.14        11.47         9.44         7.56 
TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 
        7.63         1.48        24.03        11.38        21.14         1.74 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2350 TCGA-59-2352 TCGA-59-2354 
       28.96        25.05        25.02        22.32         9.40        34.39 
TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1727 
        2.14         5.39        11.11         8.05        20.94        18.54 
TCGA-61-1728 TCGA-61-1733 TCGA-61-1736 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       27.88        31.76        48.79        35.80         2.43        33.67 
TCGA-61-1895 TCGA-61-1900 TCGA-61-1903 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
        1.41         5.79        13.02        34.13        31.30        37.02 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 
       48.92        56.58        67.73        43.43        15.75        38.17 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 TCGA-61-2009 
        1.97         5.52        14.50        17.98        30.61        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2092 
       30.64         1.18        45.96        45.40         4.80        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2109 TCGA-61-2111 
       71.74        61.64        58.39        60.62        20.68       125.72 
TCGA-61-2612 TCGA-61-2613 
        6.35        31.07 

      7Q GAIN CNV 7Q GAIN WILD-TYPE 
             0.36              0.26 
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
           180.16            129.96 
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
            20.52             29.44 
[1] "0.4 - 180.2 (20.5)" "0.3 - 130.0 (29.4)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
[1] "hr=" "1.2"
D14V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  7Q GAIN CNV             0   146                1
  7Q GAIN WILD-TYPE       2   402                1
D14V3, multiclass
                  clus
vv                 7Q GAIN CNV 7Q GAIN WILD-TYPE
  OMENTUM                    0                 2
  OVARY                    146               402
  PERITONEUM OVARY           1                 1
D14V4, continuous
                   vv
clus                I+II III  IV
  7Q GAIN CNV          2  25  13
  7Q GAIN WILD-TYPE    2 108  21
D14V5, multiclass
      clus
vv     7Q GAIN CNV 7Q GAIN WILD-TYPE
  I+II           2                 2
  III           25               108
  IV            13                21
D14V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN CNV          0  150
  7Q GAIN WILD-TYPE    3  409
     clus
vv    7Q GAIN CNV 7Q GAIN WILD-TYPE
  NO            0                 3
  YES         150               409
                   vv
clus                R0 R1 R2
  7Q GAIN CNV        6 10  0
  7Q GAIN WILD-TYPE  8 16  2
D14V7, multiclass
    clus
vv   7Q GAIN CNV 7Q GAIN WILD-TYPE
  R0           6                 8
  R1          10                16
  R2           0                 2

Clustering(15) Variable = 8p gain
D15V1, survival
                   sevent
clus2                 0   1
  8P GAIN CNV        29  56
  8P GAIN WILD-TYPE 234 228
      8P GAIN CNV 8P GAIN WILD-TYPE 
               85               462 
      8P GAIN CNV 8P GAIN WILD-TYPE 
               56               228 
$`8P GAIN CNV`
TCGA-04-1342 TCGA-04-1343 TCGA-04-1347 TCGA-04-1350 TCGA-04-1356 TCGA-04-1362 
       18.51        11.87        63.06        63.98        49.28        44.32 
TCGA-04-1364 TCGA-04-1542 TCGA-09-0365 TCGA-09-0369 TCGA-09-1659 TCGA-09-1665 
       33.67        84.20         9.47        35.54         9.96        41.59 
TCGA-09-1672 TCGA-09-2043 TCGA-10-0935 TCGA-10-0937 TCGA-13-0717 TCGA-13-0724 
        5.85         6.15        35.41        15.12        24.59         2.73 
TCGA-13-0726 TCGA-13-0751 TCGA-13-0755 TCGA-13-0760 TCGA-13-0800 TCGA-13-0884 
       31.07        55.17         2.47        11.54         8.12       107.18 
TCGA-13-0893 TCGA-13-0903 TCGA-13-0908 TCGA-13-1408 TCGA-13-1409 TCGA-13-1485 
       43.36        47.38        44.84         5.92         6.84        20.68 
TCGA-13-1488 TCGA-13-1497 TCGA-13-1506 TCGA-13-2057 TCGA-20-1683 TCGA-20-1685 
       70.82        54.31         4.41        14.24        25.38        16.67 
TCGA-20-1687 TCGA-23-1023 TCGA-23-1029 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 
        2.66        40.54         8.81        51.35        54.51         3.22 
TCGA-23-2079 TCGA-24-1103 TCGA-24-1435 TCGA-24-1553 TCGA-24-1556 TCGA-24-1557 
       91.66        54.08        43.53        58.09        70.62        39.88 
TCGA-24-2019 TCGA-24-2271 TCGA-25-1317 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 
        4.87        31.63         1.02         2.96        18.58        18.02 
TCGA-25-1628 TCGA-25-1632 TCGA-25-1877 TCGA-25-2392 TCGA-25-2398 TCGA-25-2401 
       20.58        56.94        18.05         1.02        45.01         2.96 
TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1696 TCGA-29-1702 TCGA-29-1764 
       44.71        47.18       101.75        33.70        18.64        62.93 
TCGA-29-1776 TCGA-29-1785 TCGA-29-2431 TCGA-30-1714 TCGA-30-1853 TCGA-30-1861 
       11.84        34.62        42.25        38.07        36.26        34.78 
TCGA-30-1892 TCGA-31-1946 TCGA-36-1576 TCGA-36-2548 TCGA-57-1582 TCGA-59-2354 
       48.79        30.18        30.05        14.17        24.03        34.39 
TCGA-59-2355 TCGA-61-1743 TCGA-61-1906 TCGA-61-1918 TCGA-61-2009 TCGA-61-2111 
        2.14        43.69        34.13        15.75        39.85       125.72 
TCGA-61-2612 
        6.35 

$`8P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1346 TCGA-04-1348 TCGA-04-1349 TCGA-04-1351 TCGA-04-1361 TCGA-04-1365 
       65.49        48.76        21.57        65.46        32.52        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 
       71.47        82.36        56.55        41.59        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
      119.08        29.06        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       64.64        36.23        31.86        47.70        45.34        29.16 
TCGA-09-0366 TCGA-09-0367 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 
       57.73        17.95        38.43        89.33        74.89        57.57 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 TCGA-09-1674 
       61.87        55.36        30.48        17.98         3.02         8.55 
TCGA-09-1675 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
       97.55         6.12        35.15         4.50       112.37        71.11 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       63.09        39.75        20.91        26.93        12.46        54.31 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 
       25.91        81.47        18.48        33.24        32.28        11.70 
TCGA-10-0934 TCGA-10-0936 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 TCGA-13-0723 
        3.88        35.80        19.86         6.21        44.55        39.58 
TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 TCGA-13-0757 TCGA-13-0758 TCGA-13-0761 
       12.39        15.19        17.79        11.18        11.38        34.06 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       32.25        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 
       28.70        30.35        19.56         8.71         7.79         8.28 
TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.19        43.82        35.28        35.28        13.61        68.91 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 
       91.40        74.27        66.64        70.39        61.81        67.99 
TCGA-13-0891 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0904 
       69.01        57.47        56.15        57.07        19.36        48.33 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 
       47.84        44.94        37.08        27.68        34.06        29.98 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 
       21.14        14.89        13.81         4.64         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1410 TCGA-13-1411 
       10.88         6.61         7.36         6.05         4.70         4.21 
TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 
        5.33        54.61        87.06        61.71        29.39        98.04 
TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 
       22.39        82.88        52.44        73.55        38.17        49.22 
TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
        4.24        37.61        38.37        13.97        32.84        16.57 
TCGA-13-1505 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
        4.21         4.77         4.14         2.56         3.88         3.09 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 
       12.23         8.58        10.78         8.75         6.28        23.05 
TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 TCGA-20-1686 
       25.94        26.20        72.20        27.48        19.07         2.93 
TCGA-23-1021 TCGA-23-1022 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       47.54        42.51        15.39        26.83        31.73        49.41 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 
       29.10        18.87         2.24        31.20        68.68         4.57 
TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 
       33.30        86.01       129.96         4.27         6.38        39.09 
TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 
       33.47        58.13         0.53        24.95       115.89        87.48 
TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 
       77.00        49.84         2.76         4.70         4.50         7.63 
TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 
       19.63        11.64        21.80        41.56         7.66        22.32 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       63.55        47.41         6.31         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 
        7.86         0.76         6.25         6.02         5.95         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1436 
        4.80        17.36        28.34        19.17        18.67         8.55 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
       72.92        12.46        45.14       105.99         9.11         3.42 
TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 
        1.18        22.19        26.96        57.37        64.27        16.21 
TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1555 TCGA-24-1558 
       56.58        41.06        51.91        41.39        88.50        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       90.15        88.34        48.33        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
        3.72         3.81         4.37        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        9.80        22.65        30.21        16.41        11.05        81.11 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 
      151.99        44.84        58.16        34.82       109.68        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
       53.95        18.48        28.18        64.01        44.48        57.07 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2280 TCGA-24-2281 
       36.16         0.79         0.36        47.54        70.45        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
        0.82        67.36        36.23        16.64        33.11        55.86 
TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       53.26         1.02        26.93        31.99        51.06        37.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
       34.98        65.00        36.95        33.96         2.99        12.00 
TCGA-25-1626 TCGA-25-1627 TCGA-25-1630 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 
       15.78         0.36         7.86         0.30        60.59        35.54 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       51.22        14.93        24.99        85.05        13.02        49.05 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2399 TCGA-25-2400 TCGA-25-2404 
       38.04         3.02        12.00        19.99        42.02        29.00 
TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1694 TCGA-29-1695 TCGA-29-1697 
       30.97        26.96        78.87        38.53         0.79        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
       68.28         0.53        16.90        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1766 
       29.23        34.62        17.00        85.68        66.77        39.09 
TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 
       31.23        22.98        24.36        22.52        17.29        12.36 
TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-2414 
       12.30        14.93         8.35         7.20         5.36        86.17 
TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2432 TCGA-29-2434 
       65.00        62.47        45.11         4.87        11.84        11.47 
TCGA-29-2436 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 
        9.76        51.91         2.47        15.68         0.26        48.07 
TCGA-30-1860 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       44.91         6.08        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-31-1944 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       30.05        45.57        18.77        22.45         6.71        42.51 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       44.09         2.17        28.73        29.06        21.53        22.85 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 
       22.55         8.55        25.74        27.85        24.23        24.69 
TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       35.05        33.01        29.49        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       23.80        21.60         2.24        20.98        18.31        20.52 
TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 
        6.05        16.14        11.47        14.30         9.07         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1583 TCGA-57-1584 
        7.56         7.46         7.63         1.48        11.38        21.14 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 
        1.74        22.32        28.96        25.05        25.02       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2363 TCGA-59-2372 
       80.12        22.32       116.12         9.40         5.39        44.78 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 
       11.11         8.05        20.94        31.40        18.54        27.88 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
        4.34        31.76        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 
        2.43        33.67         1.41         8.42         5.79        11.41 
TCGA-61-1903 TCGA-61-1904 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
       13.02         9.07        31.30        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       56.58        67.73        43.43        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2012 TCGA-61-2016 
       14.50        17.98         3.98        30.61        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
       45.96        45.40         4.80         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       61.64        58.39        60.62        65.49        55.50         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2113 TCGA-61-2613 TCGA-61-2614 
       76.83        20.68        44.52        22.22        31.07         8.58 

      8P GAIN CNV 8P GAIN WILD-TYPE 
             1.02              0.26 
      8P GAIN CNV 8P GAIN WILD-TYPE 
           125.72            180.16 
      8P GAIN CNV 8P GAIN WILD-TYPE 
            33.67             27.58 
[1] "1.0 - 125.7 (33.7)" "0.3 - 180.2 (27.6)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "8P GAIN CNV" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "8P GAIN CNV" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "8P GAIN CNV"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV"       "8P GAIN CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "8P GAIN CNV" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "8P GAIN CNV" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "8P GAIN CNV" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "8P GAIN CNV"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV"       "8P GAIN CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "8P GAIN CNV" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "8P GAIN CNV" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "8P GAIN CNV" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "8P GAIN CNV"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV"       "8P GAIN CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "8P GAIN CNV" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D15V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  8P GAIN CNV             0    86                0
  8P GAIN WILD-TYPE       2   462                2
D15V3, multiclass
                  clus
vv                 8P GAIN CNV 8P GAIN WILD-TYPE
  OMENTUM                    0                 2
  OVARY                     86               462
  PERITONEUM OVARY           0                 2
D15V4, continuous
                   vv
clus                I+II III  IV
  8P GAIN CNV          1  14   7
  8P GAIN WILD-TYPE    3 119  27
D15V5, multiclass
      clus
vv     8P GAIN CNV 8P GAIN WILD-TYPE
  I+II           1                 3
  III           14               119
  IV             7                27
D15V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN CNV          1   85
  8P GAIN WILD-TYPE    2  474
     clus
vv    8P GAIN CNV 8P GAIN WILD-TYPE
  NO            1                 2
  YES          85               474
                   vv
clus                R0 R1 R2
  8P GAIN CNV        1  2  0
  8P GAIN WILD-TYPE 13 24  2
D15V7, multiclass
    clus
vv   8P GAIN CNV 8P GAIN WILD-TYPE
  R0           1                13
  R1           2                24
  R2           0                 2

Clustering(16) Variable = 8q gain
D16V1, survival
                   sevent
clus2                 0   1
  8Q GAIN CNV        83 117
  8Q GAIN WILD-TYPE 180 167
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
              200               347 
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
              117               167 
$`8Q GAIN CNV`
TCGA-04-1335 TCGA-04-1338 TCGA-04-1342 TCGA-04-1343 TCGA-04-1347 TCGA-04-1349 
        1.81        46.62        18.51        11.87        63.06        21.57 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1542 
       65.46        49.28        44.32        33.67        76.54        84.20 
TCGA-04-1646 TCGA-04-1652 TCGA-09-0365 TCGA-09-0369 TCGA-09-1659 TCGA-09-1665 
       27.88        31.86         9.47        35.54         9.96        41.59 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1670 TCGA-09-1672 TCGA-09-2043 TCGA-10-0925 
       61.87        55.36        17.98         5.85         6.15        54.31 
TCGA-10-0927 TCGA-10-0933 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 
       81.47        11.70        35.41        35.80        15.12        19.86 
TCGA-13-0717 TCGA-13-0724 TCGA-13-0726 TCGA-13-0751 TCGA-13-0755 TCGA-13-0760 
       24.59         2.73        31.07        55.17         2.47        11.54 
TCGA-13-0761 TCGA-13-0792 TCGA-13-0800 TCGA-13-0802 TCGA-13-0807 TCGA-13-0883 
       34.06        36.72         8.12         8.19        13.61        68.91 
TCGA-13-0884 TCGA-13-0890 TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 TCGA-13-0903 
      107.18        67.99        43.36        57.47        57.07        47.38 
TCGA-13-0911 TCGA-13-0919 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1408 
       27.68        14.89         6.08        10.88         6.61         5.92 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 
        6.84         4.70         4.21        98.04        20.68        70.82 
TCGA-13-1497 TCGA-13-1500 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-2060 
       54.31        13.97         4.21         4.41         4.77         8.58 
TCGA-20-0987 TCGA-20-0991 TCGA-20-1683 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       23.05        26.20        25.38        16.67         2.93         2.66 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 TCGA-23-1029 TCGA-23-1031 TCGA-23-1109 
       42.51        40.54        26.83         8.81        18.87        51.35 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1116 TCGA-23-1117 TCGA-23-1119 TCGA-23-1121 
       54.51         3.22         4.57        33.30       129.96         6.38 
TCGA-23-1124 TCGA-23-2072 TCGA-23-2079 TCGA-23-2084 TCGA-23-2645 TCGA-24-0975 
       58.13        24.95        91.66        49.84         4.50        21.80 
TCGA-24-0979 TCGA-24-1103 TCGA-24-1105 TCGA-24-1419 TCGA-24-1423 TCGA-24-1435 
       41.56        54.08        47.41         7.86         6.25        43.53 
TCGA-24-1436 TCGA-24-1464 TCGA-24-1467 TCGA-24-1546 TCGA-24-1552 TCGA-24-1553 
        8.55        12.46       105.99        64.27        41.39        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1563 TCGA-24-1564 
       88.50        70.62        39.88        19.53        47.70        25.87 
TCGA-24-1847 TCGA-24-1924 TCGA-24-1927 TCGA-24-2019 TCGA-24-2020 TCGA-24-2027 
       11.28        30.21        16.41         4.87       151.99       109.68 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2262 TCGA-24-2271 TCGA-24-2290 TCGA-24-2295 
       18.48        28.18         0.36        31.63        36.23        33.11 
TCGA-25-1312 TCGA-25-1317 TCGA-25-1321 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 
        1.02         1.02        33.96         2.96        18.58        18.02 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1632 TCGA-25-1877 TCGA-25-1878 TCGA-25-2392 
        0.36        20.58        56.94        18.05        85.05         1.02 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2401 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 
       45.01        19.99         2.96        44.71        47.18       101.75 
TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1698 TCGA-29-1701 TCGA-29-1702 
       38.53         0.79        33.70        68.28        16.90        18.64 
TCGA-29-1703 TCGA-29-1764 TCGA-29-1766 TCGA-29-1776 TCGA-29-1778 TCGA-29-1783 
       59.67        62.93        39.09        11.84        14.93         7.20 
TCGA-29-1785 TCGA-29-2427 TCGA-29-2431 TCGA-29-2432 TCGA-30-1714 TCGA-30-1853 
       34.62        62.47        42.25        11.84        38.07        36.26 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1861 TCGA-30-1887 TCGA-30-1892 TCGA-31-1944 
        0.26        48.07        34.78        24.26        48.79        45.57 
TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1956 TCGA-31-1959 TCGA-36-1569 
       30.18        18.77        22.45        44.09         2.17        29.06 
TCGA-36-1570 TCGA-36-1574 TCGA-36-1576 TCGA-36-1580 TCGA-36-2529 TCGA-36-2548 
       21.53        22.55        30.05        24.23        35.05        14.17 
TCGA-42-2588 TCGA-57-1582 TCGA-57-1585 TCGA-57-1586 TCGA-59-2348 TCGA-59-2354 
        9.44        24.03         1.74        22.32       180.16        34.39 
TCGA-59-2355 TCGA-61-1724 TCGA-61-1725 TCGA-61-1728 TCGA-61-1736 TCGA-61-1743 
        2.14        20.94        31.40        27.88        48.79        43.69 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1914 TCGA-61-1918 TCGA-61-1919 
       34.13        31.30        37.02        56.58        15.75        38.17 
TCGA-61-1998 TCGA-61-2009 TCGA-61-2016 TCGA-61-2088 TCGA-61-2109 TCGA-61-2111 
        5.52        39.85         1.18         4.77        20.68       125.72 
TCGA-61-2612 TCGA-61-2614 
        6.35         8.58 

$`8Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1337 TCGA-04-1346 TCGA-04-1348 
       40.24        41.00        49.15         2.01        65.49        48.76 
TCGA-04-1350 TCGA-04-1361 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 
       63.98        32.52        71.47        82.36        56.55        41.59 
TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 
       19.99        38.37       119.08        29.06        55.40        48.89 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       28.64        64.64        36.23        47.70        45.34        29.16 
TCGA-09-0366 TCGA-09-0367 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 
       57.73        17.95        38.43        89.33        74.89        57.57 
TCGA-09-1669 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2044 TCGA-09-2045 
       30.48         3.02         8.55        97.55         6.12        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 
        4.50       112.37        71.11        63.09        39.75        20.91 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0926 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 
       26.93        12.46        25.91        18.48        33.24        32.28 
TCGA-10-0934 TCGA-13-0714 TCGA-13-0720 TCGA-13-0723 TCGA-13-0725 TCGA-13-0727 
        3.88         6.21        44.55        39.58        12.39        15.19 
TCGA-13-0730 TCGA-13-0757 TCGA-13-0758 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 
       17.79        11.18        11.38        32.25        31.04        21.40 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 
        8.42        38.93        28.70        30.35        19.56         8.71 
TCGA-13-0799 TCGA-13-0801 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0885 
        7.79         8.28        43.82        35.28        35.28        91.40 
TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0891 TCGA-13-0899 
       74.27        66.64        70.39        61.81        69.01        56.15 
TCGA-13-0901 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       19.36        48.33        47.84        44.94        44.84        37.08 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 
       34.06        29.98        21.14        13.81         4.64         6.41 
TCGA-13-1405 TCGA-13-1407 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
        7.36         6.05         5.33        54.61        87.06        61.71 
TCGA-13-1483 TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 
       29.39        22.39        82.88        52.44        73.55        38.17 
TCGA-13-1495 TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 TCGA-13-1501 TCGA-13-1504 
       49.22         4.24        37.61        38.37        32.84        16.57 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 
        4.14         2.56         3.88         3.09        14.24        12.23 
TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0990 TCGA-20-0996 TCGA-20-1682 
       10.78         8.75         6.28        25.94        72.20        27.48 
TCGA-20-1684 TCGA-23-1021 TCGA-23-1024 TCGA-23-1027 TCGA-23-1028 TCGA-23-1030 
       19.07        47.54        15.39        31.73        49.41        29.10 
TCGA-23-1032 TCGA-23-1113 TCGA-23-1114 TCGA-23-1118 TCGA-23-1120 TCGA-23-1122 
        2.24        31.20        68.68        86.01         4.27        39.09 
TCGA-23-1123 TCGA-23-1809 TCGA-23-2077 TCGA-23-2078 TCGA-23-2081 TCGA-23-2641 
       33.47         0.53       115.89        87.48        77.00         2.76 
TCGA-23-2643 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0980 TCGA-24-0982 
        4.70         7.63        19.63        11.64         7.66        22.32 
TCGA-24-1104 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1422 
       63.55         6.31         6.38         7.82         7.99         0.76 
TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 
        6.02         5.95         5.36         4.80        17.36        28.34 
TCGA-24-1431 TCGA-24-1434 TCGA-24-1463 TCGA-24-1466 TCGA-24-1469 TCGA-24-1470 
       19.17        18.67        72.92        45.14         9.11         3.42 
TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1548 TCGA-24-1549 
        1.18        22.19        26.96        57.37        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1560 TCGA-24-1562 TCGA-24-1565 TCGA-24-1567 
       41.06        51.91        44.09        45.50        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       90.15        88.34        48.33        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.72         3.81         4.37         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1928 TCGA-24-1930 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 
       22.65        11.05        81.11        44.84        58.16        34.82 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 
       14.43        53.95        64.01        44.48        57.07        36.16 
TCGA-24-2261 TCGA-24-2267 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
        0.79        47.54        70.45        44.58         0.82        67.36 
TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       16.64        55.86        53.26        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 
       37.02        34.98        65.00        36.95         2.99        12.00 
TCGA-25-1626 TCGA-25-1630 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 
       15.78         7.86         0.30        60.59        35.54        51.22 
TCGA-25-1870 TCGA-25-1871 TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 TCGA-25-2396 
       14.93        24.99        13.02        49.05        38.04         3.02 
TCGA-25-2397 TCGA-25-2400 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 
       12.00        42.02        29.00        30.97        26.96        78.87 
TCGA-29-1697 TCGA-29-1699 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 
       31.17         0.53        18.25        41.95        29.23        34.62 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 
       17.00        85.68        66.77        31.23        22.98        24.36 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1777 TCGA-29-1781 TCGA-29-1784 
       22.52        17.29        12.36        12.30         8.35         5.36 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2428 TCGA-29-2429 TCGA-29-2434 TCGA-29-2436 
       86.17        65.00        45.11         4.87        11.47         9.76 
TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1860 TCGA-30-1862 TCGA-30-1866 
       51.91         2.47        15.68        44.91         6.08        36.62 
TCGA-30-1867 TCGA-30-1880 TCGA-30-1891 TCGA-31-1953 TCGA-31-1955 TCGA-36-1568 
        1.18        57.57        30.05         6.71        42.51        28.73 
TCGA-36-1571 TCGA-36-1575 TCGA-36-1577 TCGA-36-1578 TCGA-36-1581 TCGA-36-2530 
       22.85         8.55        25.74        27.85        24.69        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 
       29.49        29.79        25.91        25.08        23.80        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2549 TCGA-36-2551 
        2.24        20.98        18.31        20.52         6.05        16.14 
TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
       11.47        14.30         9.07         7.56         7.46         7.63 
TCGA-42-2593 TCGA-57-1583 TCGA-57-1584 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 
        1.48        11.38        21.14        28.96        25.05        25.02 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2363 TCGA-59-2372 
       80.12        22.32       116.12         9.40         5.39        44.78 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1727 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 
       11.11         8.05        18.54         4.34        31.76        28.47 
TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1895 TCGA-61-1899 
       44.84        35.80         2.43        33.67         1.41         8.42 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1911 TCGA-61-1913 
        5.79        11.41        13.02         9.07        42.48        48.92 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1995 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
       67.73        43.43         1.97        14.50        17.98         3.98 
TCGA-61-2008 TCGA-61-2012 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2092 
       30.61        30.64        45.96        45.40         4.80        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
       71.74        61.64        58.39        60.62        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2110 TCGA-61-2113 TCGA-61-2613 
        6.48        76.83        44.52        22.22        31.07 

      8Q GAIN CNV 8Q GAIN WILD-TYPE 
             0.26              0.30 
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
           180.16            119.08 
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
            27.78             28.64 
[1] "0.3 - 180.2 (27.8)" "0.3 - 119.1 (28.6)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
[1] "hr=" "1.2"
D16V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  8Q GAIN CNV             1   199                2
  8Q GAIN WILD-TYPE       1   349                0
D16V3, multiclass
                  clus
vv                 8Q GAIN CNV 8Q GAIN WILD-TYPE
  OMENTUM                    1                 1
  OVARY                    199               349
  PERITONEUM OVARY           2                 0
D16V4, continuous
                   vv
clus                I+II III IV
  8Q GAIN CNV          3  55 14
  8Q GAIN WILD-TYPE    1  78 20
D16V5, multiclass
      clus
vv     8Q GAIN CNV 8Q GAIN WILD-TYPE
  I+II           3                 1
  III           55                78
  IV            14                20
D16V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN CNV          1  202
  8Q GAIN WILD-TYPE    2  357
     clus
vv    8Q GAIN CNV 8Q GAIN WILD-TYPE
  NO            1                 2
  YES         202               357
                   vv
clus                R0 R1 R2
  8Q GAIN CNV        1  9  1
  8Q GAIN WILD-TYPE 13 17  1
D16V7, multiclass
    clus
vv   8Q GAIN CNV 8Q GAIN WILD-TYPE
  R0           1                13
  R1           9                17
  R2           1                 1

Clustering(17) Variable = 9p gain
D17V1, survival
                   sevent
clus2                 0   1
  9P GAIN CNV        27  31
  9P GAIN WILD-TYPE 236 253
      9P GAIN CNV 9P GAIN WILD-TYPE 
               58               489 
      9P GAIN CNV 9P GAIN WILD-TYPE 
               31               253 
$`9P GAIN CNV`
TCGA-04-1516 TCGA-09-1668 TCGA-09-2045 TCGA-09-2051 TCGA-10-0933 TCGA-10-0935 
       41.59        55.36        35.15        63.09        11.70        35.41 
TCGA-10-0936 TCGA-13-0723 TCGA-13-0751 TCGA-13-0807 TCGA-13-0884 TCGA-13-0893 
       35.80        39.58        55.17        13.61       107.18        43.36 
TCGA-13-0911 TCGA-13-0923 TCGA-13-1488 TCGA-13-1505 TCGA-13-1507 TCGA-13-1511 
       27.68         6.41        70.82         4.21         4.77         3.88 
TCGA-20-0990 TCGA-20-1683 TCGA-20-1686 TCGA-23-1024 TCGA-23-1026 TCGA-23-1032 
       25.94        25.38         2.93        15.39        26.83         2.24 
TCGA-23-1121 TCGA-23-1809 TCGA-23-2077 TCGA-23-2084 TCGA-24-1424 TCGA-24-1428 
        6.38         0.53       115.89        49.84         6.02        17.36 
TCGA-24-1436 TCGA-24-1466 TCGA-24-1469 TCGA-24-1544 TCGA-24-1553 TCGA-24-1556 
        8.55        45.14         9.11        26.96        58.09        70.62 
TCGA-24-1614 TCGA-24-1842 TCGA-24-1847 TCGA-24-1850 TCGA-24-1924 TCGA-24-2026 
       48.33         8.32        11.28         5.49        30.21        34.82 
TCGA-24-2298 TCGA-25-1319 TCGA-25-1329 TCGA-25-1628 TCGA-25-1878 TCGA-25-2396 
       53.26        65.00         2.96        20.58        85.05         3.02 
TCGA-25-2404 TCGA-29-1762 TCGA-29-1763 TCGA-30-1859 TCGA-30-1862 TCGA-36-2532 
       29.00        85.68        66.77        48.07         6.08        29.49 
TCGA-61-1741 TCGA-61-1895 TCGA-61-2087 TCGA-61-2111 
       33.67         1.41         4.80       125.72 

$`9P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       63.98        65.46        49.28        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 TCGA-04-1525 
       76.54        71.47        82.36        56.55        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
      119.08        29.06        84.20        55.40        48.89        27.88 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 
       28.64        64.64        36.23        31.86        47.70        45.34 
TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 
       29.16         9.47        57.73        17.95        35.54         9.96 
TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 
       38.43        89.33        74.89        41.59        57.57        61.87 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 
       30.48        17.98         5.85         3.02         8.55        97.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2053 
        6.15         6.12         4.50       112.37        71.11        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       20.91        26.93        12.46        54.31        25.91        81.47 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0934 TCGA-10-0937 TCGA-10-0938 
       18.48        33.24        32.28         3.88        15.12        19.86 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 
        6.21        24.59        44.55         2.73        12.39        31.07 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 
       15.19        17.79         2.47        11.18        11.38        11.54 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       34.06        32.25        31.04        21.40         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       36.72        28.70        30.35        19.56         8.71         7.79 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        8.12         8.28         8.19        43.82        35.28        35.28 
TCGA-13-0883 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 
       68.91        91.40        74.27        66.64        70.39        61.81 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       67.99        69.01        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       47.38        48.33        47.84        44.94        44.84        37.08 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       34.06        29.98        21.14        14.89        13.81         4.64 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 
        6.08        10.88         6.61         7.36         6.05         5.92 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        6.84         4.70         4.21         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1489 
       61.71        29.39        98.04        20.68        22.39        82.88 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 
       52.44        73.55        38.17        49.22         4.24        54.31 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1506 
       37.61        38.37        13.97        32.84        16.57         4.41 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 
        4.14         2.56         3.09        14.24        12.23         8.58 
TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0991 TCGA-20-0996 
       10.78         8.75         6.28        23.05        26.20        72.20 
TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 
       27.48        19.07        16.67         2.66        47.54        42.51 
TCGA-23-1023 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       40.54        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 
       51.35        54.51         3.22        31.20        68.68         4.57 
TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1122 TCGA-23-1123 
       33.30        86.01       129.96         4.27        39.09        33.47 
TCGA-23-1124 TCGA-23-2072 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2641 
       58.13        24.95        87.48        91.66        77.00         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        4.70         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       41.56         7.66        22.32        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 
        6.31         6.38         7.82         7.99         7.86         0.76 
TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1430 TCGA-24-1431 
        6.25         5.95         5.36         4.80        28.34        19.17 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 TCGA-24-1467 TCGA-24-1470 
       18.67        43.53        72.92        12.46       105.99         3.42 
TCGA-24-1471 TCGA-24-1474 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
        1.18        22.19        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1555 TCGA-24-1557 TCGA-24-1558 
       41.06        51.91        41.39        88.50        39.88        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 
       90.15        88.34        38.24         3.48         3.72         3.81 
TCGA-24-1846 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 TCGA-24-1928 
        4.37         5.75         9.80        22.65        16.41        11.05 
TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 
       81.11         4.87       151.99        44.84        58.16       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
       14.43        53.95        18.48        28.18        64.01        44.48 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       57.07        36.16         0.79         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       70.45        44.58         0.82        67.36        36.23        16.64 
TCGA-24-2295 TCGA-24-2297 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       33.11        55.86         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 
       37.02         1.02        34.98        36.95        33.96         2.99 
TCGA-25-1323 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1630 
       12.00        18.58        18.02        15.78         0.36         7.86 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 
        0.30        56.94        60.59        35.54        51.22        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 
       24.99        18.05        13.02        49.05         1.02        38.04 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2408 
       12.00        45.01        19.99        42.02         2.96        30.97 
TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 
       26.96        78.87        44.71        47.18       101.75        38.53 
TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 
        0.79        33.70        31.17        68.28         0.53        16.90 
TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 
       18.64        59.67        18.25        41.95        29.23        34.62 
TCGA-29-1761 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 
       17.00        62.93        39.09        31.23        22.98        24.36 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       22.52        17.29        12.36        11.84        12.30        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
        8.35         7.20         5.36        34.62        86.17        65.00 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 
       62.47        45.11         4.87        42.25        11.84        11.47 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 
        9.76        38.07        51.91        36.26         2.47        15.68 
TCGA-30-1857 TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 
        0.26        44.91        34.78        36.62         1.18        57.57 
TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 
       24.26        30.05        48.79        45.57        30.18        18.77 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 
       22.45         6.71        42.51        44.09         2.17        28.73 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 
       29.06        21.53        22.85        22.55         8.55        30.05 
TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 
       25.74        27.85        24.23        24.69        35.05        33.01 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.79        25.91        25.08        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 
       20.98        18.31        20.52        14.17         6.05        16.14 
TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       11.47        14.30         9.07         9.44         7.56         7.46 
TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 
        7.63         1.48        24.03        11.38        21.14         1.74 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       22.32        28.96        25.05        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       22.32       116.12         9.40        34.39         2.14         5.39 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 
       44.78        11.11         8.05        20.94        31.40        18.54 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       27.88         4.34        31.76        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1743 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 
       35.80         2.43        43.69         8.42         5.79        11.41 
TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 
       13.02         9.07        34.13        31.30        37.02        42.48 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 
       48.92        56.58        67.73        43.43        15.75        38.17 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 
        1.97         5.52        14.50        17.98         3.98        30.61 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2088 
       39.85        30.64         1.18        45.96        45.40         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 
       51.72        71.74        61.64        58.39        60.62        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2113 
       55.50         6.48        76.83        20.68        44.52        22.22 
TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        6.35        31.07         8.58 

      9P GAIN CNV 9P GAIN WILD-TYPE 
             0.53              0.26 
      9P GAIN CNV 9P GAIN WILD-TYPE 
           125.72            180.16 
      9P GAIN CNV 9P GAIN WILD-TYPE 
            28.34             28.18 
[1] "0.5 - 125.7 (28.3)" "0.3 - 180.2 (28.2)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "9P GAIN CNV"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
      "9P GAIN CNV" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV"       "9P GAIN CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
      "9P GAIN CNV" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "9P GAIN CNV"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
      "9P GAIN CNV" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV"       "9P GAIN CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
      "9P GAIN CNV" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "9P GAIN CNV"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
      "9P GAIN CNV" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV"       "9P GAIN CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
      "9P GAIN CNV" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D17V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  9P GAIN CNV             0    59                0
  9P GAIN WILD-TYPE       2   489                2
D17V3, multiclass
                  clus
vv                 9P GAIN CNV 9P GAIN WILD-TYPE
  OMENTUM                    0                 2
  OVARY                     59               489
  PERITONEUM OVARY           0                 2
D17V4, continuous
                   vv
clus                I+II III  IV
  9P GAIN CNV          0  17   6
  9P GAIN WILD-TYPE    4 116  28
D17V5, multiclass
      clus
vv     9P GAIN CNV 9P GAIN WILD-TYPE
  I+II           0                 4
  III           17               116
  IV             6                28
D17V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN CNV          0   59
  9P GAIN WILD-TYPE    3  500
     clus
vv    9P GAIN CNV 9P GAIN WILD-TYPE
  NO            0                 3
  YES          59               500
                   vv
clus                R0 R1 R2
  9P GAIN CNV        2  2  0
  9P GAIN WILD-TYPE 12 24  2
D17V7, multiclass
    clus
vv   9P GAIN CNV 9P GAIN WILD-TYPE
  R0           2                12
  R1           2                24
  R2           0                 2

Clustering(18) Variable = 9q gain
D18V1, survival
                   sevent
clus2                 0   1
  9Q GAIN CNV        13  13
  9Q GAIN WILD-TYPE 250 271
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
               26               521 
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
               13               271 
$`9Q GAIN CNV`
TCGA-04-1516 TCGA-09-1668 TCGA-13-0723 TCGA-13-0893 TCGA-13-0911 TCGA-13-1505 
       41.59        55.36        39.58        43.36        27.68         4.21 
TCGA-20-1683 TCGA-23-1809 TCGA-23-2084 TCGA-24-1466 TCGA-24-1552 TCGA-24-1614 
       25.38         0.53        49.84        45.14        41.39        48.33 
TCGA-24-1842 TCGA-24-1847 TCGA-24-1850 TCGA-25-1329 TCGA-25-1628 TCGA-25-1635 
        8.32        11.28         5.49         2.96        20.58        51.22 
TCGA-25-1878 TCGA-25-2404 TCGA-29-1762 TCGA-30-1862 TCGA-36-2542 TCGA-42-2591 
       85.05        29.00        85.68         6.08        21.60         7.63 
TCGA-61-1907 TCGA-61-2008 
       31.30        30.61 

$`9Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       63.98        65.46        49.28        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 TCGA-04-1525 
       76.54        71.47        82.36        56.55        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
      119.08        29.06        84.20        55.40        48.89        27.88 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 
       28.64        64.64        36.23        31.86        47.70        45.34 
TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 
       29.16         9.47        57.73        17.95        35.54         9.96 
TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 
       38.43        89.33        74.89        41.59        57.57        61.87 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 
       30.48        17.98         5.85         3.02         8.55        97.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
        6.15         6.12        35.15         4.50       112.37        71.11 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       63.09        39.75        20.91        26.93        12.46        54.31 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 
       25.91        81.47        18.48        33.24        32.28        11.70 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 
        3.88        35.41        35.80        15.12        19.86         6.21 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 
       24.59        44.55         2.73        12.39        31.07        15.19 
TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 
       17.79        55.17         2.47        11.18        11.38        11.54 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       34.06        32.25        31.04        21.40         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       36.72        28.70        30.35        19.56         8.71         7.79 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        8.12         8.28         8.19        43.82        35.28        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       13.61        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 TCGA-13-0899 
       70.39        61.81        67.99        69.01        57.47        56.15 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 
       57.07        19.36        47.38        48.33        47.84        44.94 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 
       44.84        37.08        34.06        29.98        21.14        14.89 
TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 
       13.81         4.64         6.41         6.08        10.88         6.61 
TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 
        7.36         6.05         5.92         6.84         4.70         4.21 
TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 
        5.33        54.61        87.06        61.71        29.39        98.04 
TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 
       20.68        22.39        70.82        82.88        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       38.17        49.22         4.24        54.31        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       13.97        32.84        16.57         4.41         4.77         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 
        2.56         3.88         3.09        14.24        12.23         8.58 
TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
       10.78         8.75         6.28        23.05        25.94        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       72.20        27.48        19.07        16.67         2.93         2.66 
TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
       47.54        42.51        40.54        15.39        26.83        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 
       49.41         8.81        29.10        18.87         2.24        51.35 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 
       54.51         3.22        31.20        68.68         4.57        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 
       86.01       129.96         4.27         6.38        39.09        33.47 
TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
       58.13        24.95       115.89        87.48        91.66        77.00 
TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
        2.76         4.70         4.50         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 
       21.80        41.56         7.66        22.32        54.08        63.55 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 
       47.41         6.31         6.38         7.82         7.99         7.86 
TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 
        0.76         6.25         6.02         5.95         5.36         4.80 
TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 
       17.36        28.34        19.17        18.67        43.53         8.55 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 
       72.92        12.46       105.99         9.11         3.42         1.18 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
       22.19        26.96        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       41.06        51.91        58.09        88.50        70.62        39.88 
TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       19.53        44.09        45.50        47.70        25.87        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 
       17.23        90.15        88.34        38.24         3.48         3.72 
TCGA-24-1845 TCGA-24-1846 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 
        3.81         4.37         5.75         9.80        22.65        30.21 
TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 
       16.41        11.05        81.11         4.87       151.99        44.84 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 
       58.16        34.82       109.68        14.43        53.95        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 
       28.18        64.01        44.48        57.07        36.16         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
        0.36        47.54        31.63        70.45        44.58         0.82 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 
       67.36        36.23        16.64        33.11        55.86        53.26 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 
        1.02        26.93        31.99        51.06        37.02         1.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
       34.98        65.00        36.95        33.96         2.99        12.00 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1630 TCGA-25-1631 
       18.58        18.02        15.78         0.36         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 
       56.94        60.59        35.54        14.93        24.99        18.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 
       13.02        49.05         1.02        38.04         3.02        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2408 TCGA-25-2409 
       45.01        19.99        42.02         2.96        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       78.87        44.71        47.18       101.75        38.53         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
       33.70        31.17        68.28         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       59.67        18.25        41.95        29.23        34.62        17.00 
TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 
       66.77        62.93        39.09        31.23        22.98        24.36 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       22.52        17.29        12.36        11.84        12.30        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
        8.35         7.20         5.36        34.62        86.17        65.00 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 
       62.47        45.11         4.87        42.25        11.84        11.47 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 
        9.76        38.07        51.91        36.26         2.47        15.68 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 TCGA-30-1867 
        0.26        48.07        44.91        34.78        36.62         1.18 
TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
       57.57        24.26        30.05        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 
       18.77        22.45         6.71        42.51        44.09         2.17 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 
       28.73        29.06        21.53        22.85        22.55         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 
       30.05        25.74        27.85        24.23        24.69        35.05 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       33.01        29.49        29.79        25.91        25.08        23.80 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 
        2.24        20.98        18.31        20.52        14.17         6.05 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 
       16.14        11.47        14.30         9.07         9.44         7.56 
TCGA-42-2590 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 
        7.46         1.48        24.03        11.38        21.14         1.74 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       22.32        28.96        25.05        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       22.32       116.12         9.40        34.39         2.14         5.39 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 
       44.78        11.11         8.05        20.94        31.40        18.54 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       27.88         4.34        31.76        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 
       35.80         2.43        33.67        43.69         1.41         8.42 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 
        5.79        11.41        13.02         9.07        34.13        37.02 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
       42.48        48.92        56.58        67.73        43.43        15.75 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
       38.17         1.97         5.52        14.50        17.98         3.98 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
       39.85        30.64         1.18        45.96        45.40         4.80 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 
        4.77        51.72        71.74        61.64        58.39        60.62 
TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       65.49        55.50         6.48        76.83        20.68        44.52 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
      125.72        22.22         6.35        31.07         8.58 

      9Q GAIN CNV 9Q GAIN WILD-TYPE 
             0.53              0.26 
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
            85.68            180.16 
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
           29.805            27.880 
[1] "0.5 - 85.7 (29.8)"  "0.3 - 180.2 (27.9)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D18V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  9Q GAIN CNV             0    26                0
  9Q GAIN WILD-TYPE       2   522                2
D18V3, multiclass
                  clus
vv                 9Q GAIN CNV 9Q GAIN WILD-TYPE
  OMENTUM                    0                 2
  OVARY                     26               522
  PERITONEUM OVARY           0                 2
D18V4, continuous
[1] "Remove cluster labels:" "9Q GAIN CNV"           
clus
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
                2                74 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1351        TCGA-04-1356 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1367        TCGA-10-0925        TCGA-10-0926        TCGA-13-0714 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0720        TCGA-13-0724        TCGA-13-0755        TCGA-13-0757 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0758        TCGA-13-0760        TCGA-13-0762        TCGA-13-0764 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0768        TCGA-13-0791        TCGA-13-0792        TCGA-13-0793 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0794        TCGA-13-0795        TCGA-13-0797        TCGA-13-0799 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0801        TCGA-13-0802        TCGA-13-0885        TCGA-13-0887 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0888        TCGA-13-0889        TCGA-13-0891        TCGA-13-0897 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0910        TCGA-13-0912 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0913        TCGA-13-0919        TCGA-13-1404        TCGA-13-1405 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1409        TCGA-13-1410        TCGA-13-1412        TCGA-13-1482 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1483        TCGA-13-1484        TCGA-13-1485        TCGA-13-1488 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1489        TCGA-13-1491        TCGA-13-1492        TCGA-13-1495 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1506        TCGA-13-1507 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1509        TCGA-13-1511        TCGA-13-1512        TCGA-13-2057 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-2059        TCGA-13-2060        TCGA-13-2061        TCGA-13-2071 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1930        TCGA-61-2101 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
                   vv
clus                I+II III  IV
  9Q GAIN CNV          0   3   2
  9Q GAIN WILD-TYPE    4 130  32
D18V5, multiclass
      clus
vv     9Q GAIN CNV 9Q GAIN WILD-TYPE
  I+II           0                 4
  III            3               130
  IV             2                32
D18V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN CNV          0   27
  9Q GAIN WILD-TYPE    3  532
     clus
vv    9Q GAIN CNV 9Q GAIN WILD-TYPE
  NO            0                 3
  YES          27               532
                   vv
clus                R0 R1 R2
  9Q GAIN CNV        1  2  0
  9Q GAIN WILD-TYPE 13 24  2
D18V7, multiclass
    clus
vv   9Q GAIN CNV 9Q GAIN WILD-TYPE
  R0           1                13
  R1           2                24
  R2           0                 2

Clustering(19) Variable = 10p gain
D19V1, survival
                    sevent
clus2                  0   1
  10P GAIN CNV        58  71
  10P GAIN WILD-TYPE 205 213
      10P GAIN CNV 10P GAIN WILD-TYPE 
               129                418 
      10P GAIN CNV 10P GAIN WILD-TYPE 
                71                213 
$`10P GAIN CNV`
TCGA-04-1332 TCGA-04-1338 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1349 
       41.00        46.62        11.87        65.49        63.06        21.57 
TCGA-04-1350 TCGA-04-1356 TCGA-04-1542 TCGA-04-1646 TCGA-04-1655 TCGA-09-0365 
       63.98        49.28        84.20        27.88        45.34         9.47 
TCGA-09-1661 TCGA-09-1668 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-2050 
       38.43        55.36         5.85         3.02         8.55        71.11 
TCGA-09-2051 TCGA-10-0933 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0757 
       63.09        11.70        15.19        17.79        55.17        11.18 
TCGA-13-0802 TCGA-13-0807 TCGA-13-0884 TCGA-13-0885 TCGA-13-0888 TCGA-13-0890 
        8.19        13.61       107.18        91.40        70.39        67.99 
TCGA-13-1407 TCGA-13-1409 TCGA-13-1412 TCGA-13-1477 TCGA-13-1492 TCGA-13-1499 
        6.05         6.84         5.33        54.61        73.55        38.37 
TCGA-13-2060 TCGA-13-2061 TCGA-20-0987 TCGA-20-1683 TCGA-20-1685 TCGA-20-1686 
        8.58        10.78        23.05        25.38        16.67         2.93 
TCGA-23-1021 TCGA-23-1022 TCGA-23-1024 TCGA-23-1031 TCGA-23-1110 TCGA-23-1116 
       47.54        42.51        15.39        18.87        54.51         4.57 
TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-2077 TCGA-23-2643 TCGA-24-1417 
       39.09        33.47        58.13       115.89         4.70         7.82 
TCGA-24-1424 TCGA-24-1427 TCGA-24-1428 TCGA-24-1436 TCGA-24-1469 TCGA-24-1544 
        6.02         4.80        17.36         8.55         9.11        26.96 
TCGA-24-1548 TCGA-24-1564 TCGA-24-1565 TCGA-24-1616 TCGA-24-1843 TCGA-24-1928 
       16.21        25.87        10.26        38.24         3.48        11.05 
TCGA-24-2260 TCGA-24-2261 TCGA-25-1312 TCGA-25-1317 TCGA-25-1320 TCGA-25-1321 
       36.16         0.79         1.02         1.02        36.95        33.96 
TCGA-25-1322 TCGA-25-1329 TCGA-25-1623 TCGA-25-1627 TCGA-25-1628 TCGA-25-1631 
        2.99         2.96        18.58         0.36        20.58         0.30 
TCGA-25-1634 TCGA-25-1635 TCGA-25-1871 TCGA-25-1877 TCGA-25-2398 TCGA-29-1691 
       35.54        51.22        24.99        18.05        45.01        47.18 
TCGA-29-1693 TCGA-29-1701 TCGA-29-1702 TCGA-29-1766 TCGA-29-1775 TCGA-29-1778 
      101.75        16.90        18.64        39.09        12.36        14.93 
TCGA-29-1783 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2428 TCGA-29-2432 
        7.20        34.62        86.17        65.00        45.11        11.84 
TCGA-30-1856 TCGA-30-1861 TCGA-30-1887 TCGA-31-1950 TCGA-31-1953 TCGA-36-1578 
       15.68        34.78        24.26        18.77         6.71        27.85 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 
       24.23        24.69        35.05        14.17        16.14        11.47 
TCGA-42-2588 TCGA-57-1582 TCGA-57-1583 TCGA-57-1586 TCGA-57-1993 TCGA-57-1994 
        9.44        24.03        11.38        22.32        25.05        25.02 
TCGA-59-2348 TCGA-59-2352 TCGA-59-2372 TCGA-61-1730 TCGA-61-1741 TCGA-61-1907 
      180.16         9.40        44.78         4.34        33.67        31.30 
TCGA-61-1911 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-2003 TCGA-61-2018 
       42.48        43.43        15.75        38.17         3.98        45.40 
TCGA-61-2098 TCGA-61-2101 TCGA-61-2612 
       65.49        55.50         6.35 

$`10P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 TCGA-04-1348 
       40.24         1.81        49.15         2.01        18.51        48.76 
TCGA-04-1351 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       65.46        32.52        44.32        33.67        76.54        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       82.36        56.55        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 
       29.06        55.40        48.89        28.64        64.64        36.23 
TCGA-04-1652 TCGA-04-1654 TCGA-09-0364 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 
       31.86        47.70        29.16        57.73        17.95        35.54 
TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 
        9.96        89.33        74.89        41.59        57.57        61.87 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 
       30.48        17.98        97.55         6.15         6.12        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 
        4.50       112.37        39.75        20.91        26.93        12.46 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 
       54.31        25.91        81.47        18.48        33.24        32.28 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 
        3.88        35.41        35.80        15.12        19.86         6.21 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 
       24.59        44.55        39.58         2.73        12.39        31.07 
TCGA-13-0755 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 
        2.47        11.38        11.54        34.06        32.25        31.04 
TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 
       21.40         8.42        38.93        36.72        28.70        30.35 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0803 
       19.56         8.71         7.79         8.12         8.28        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0883 TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 
       35.28        35.28        68.91        74.27        66.64        61.81 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       69.01        43.36        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       47.38        48.33        47.84        44.94        44.84        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 
       27.68        34.06        29.98        21.14        14.89        13.81 
TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 
        4.64         6.41         6.08        10.88         6.61         7.36 
TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        5.92         4.70         4.21        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 
       98.04        20.68        22.39        70.82        82.88        52.44 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1500 
       38.17        49.22         4.24        54.31        37.61        13.97 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       32.84        16.57         4.21         4.41         4.77         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2065 
        2.56         3.88         3.09        14.24        12.23         8.75 
TCGA-13-2071 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 
        6.28        25.94        26.20        72.20        27.48        19.07 
TCGA-20-1687 TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 
        2.66        40.54        26.83        31.73        49.41         8.81 
TCGA-23-1030 TCGA-23-1032 TCGA-23-1109 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 
       29.10         2.24        51.35         3.22        31.20        68.68 
TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1809 
       33.30        86.01       129.96         4.27         6.38         0.53 
TCGA-23-2072 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
       24.95        87.48        91.66        77.00        49.84         2.76 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 
        4.50         7.63        19.63        11.64        21.80        41.56 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
        7.66        22.32        54.08        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 
        6.38         7.99         7.86         0.76         6.25         5.95 
TCGA-24-1426 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 
        5.36        28.34        19.17        18.67        43.53        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 
       12.46        45.14       105.99         3.42         1.18        22.19 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
       57.37        64.27        56.58        41.06        51.91        41.39 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 
       58.09        88.50        70.62        39.88        19.53        44.09 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 
       45.50        47.70        17.23        90.15        88.34        48.33 
TCGA-24-1842 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 
        8.32         3.72         3.81         4.37        11.28         5.75 
TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1930 
        5.49         9.80        22.65        30.21        16.41        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 
        4.87       151.99        44.84        58.16        34.82       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
       14.43        53.95        18.48        28.18        64.01        44.48 
TCGA-24-2254 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
       57.07         0.36        47.54        31.63        70.45        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
        0.82        67.36        36.23        16.64        33.11        55.86 
TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 
       53.26        26.93        31.99        51.06        37.02        34.98 
TCGA-25-1319 TCGA-25-1323 TCGA-25-1625 TCGA-25-1626 TCGA-25-1630 TCGA-25-1632 
       65.00        12.00        18.02        15.78         7.86        56.94 
TCGA-25-1633 TCGA-25-1870 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       60.59        14.93        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 
       38.04         3.02        12.00        19.99        42.02         2.96 
TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1694 
       29.00        30.97        26.96        78.87        44.71        38.53 
TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1703 
        0.79        33.70        31.17        68.28         0.53        59.67 
TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 
       18.25        41.95        29.23        34.62        17.00        85.68 
TCGA-29-1763 TCGA-29-1764 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 
       66.77        62.93        31.23        22.98        24.36        22.52 
TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1784 TCGA-29-2427 
       17.29        11.84        12.30         8.35         5.36        62.47 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
        4.87        42.25        11.47         9.76        38.07        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1862 
       36.26         2.47         0.26        48.07        44.91         6.08 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 
       36.62         1.18        57.57        30.05        48.79        45.57 
TCGA-31-1946 TCGA-31-1951 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 
       30.18        22.45        42.51        44.09         2.17        28.73 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 
       29.06        21.53        22.85        22.55         8.55        30.05 
TCGA-36-1577 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       25.74        33.01        29.49        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       23.80        21.60         2.24        20.98        18.31        20.52 
TCGA-36-2549 TCGA-42-2582 TCGA-42-2587 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
        6.05        14.30         9.07         7.56         7.46         7.63 
TCGA-42-2593 TCGA-57-1584 TCGA-57-1585 TCGA-57-1992 TCGA-59-2349 TCGA-59-2350 
        1.48        21.14         1.74        28.96        80.12        22.32 
TCGA-59-2351 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 TCGA-61-1722 
      116.12        34.39         2.14         5.39        11.11         8.05 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 TCGA-61-1734 
       20.94        31.40        18.54        27.88        31.76        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1743 TCGA-61-1895 
       48.79        44.84        35.80         2.43        43.69         1.41 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
        8.42         5.79        11.41        13.02         9.07        34.13 
TCGA-61-1910 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1995 TCGA-61-1998 
       37.02        48.92        56.58        67.73         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 
       14.50        17.98        30.61        39.85        30.64         1.18 
TCGA-61-2017 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.96         4.80         4.77        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2097 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       58.39        60.62         6.48        76.83        20.68        44.52 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2613 TCGA-61-2614 
      125.72        22.22        31.07         8.58 

      10P GAIN CNV 10P GAIN WILD-TYPE 
              0.30               0.26 
      10P GAIN CNV 10P GAIN WILD-TYPE 
            180.16             151.99 
      10P GAIN CNV 10P GAIN WILD-TYPE 
            24.030             29.195 
[1] "0.3 - 180.2 (24.0)" "0.3 - 152.0 (29.2)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
      "10P GAIN CNV"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "10P GAIN CNV"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-61-2614 
"10P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
      "10P GAIN CNV"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "10P GAIN CNV"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-61-2614 
"10P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
      "10P GAIN CNV"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "10P GAIN CNV"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-61-2614 
"10P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D19V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  10P GAIN CNV             0   128                2
  10P GAIN WILD-TYPE       2   420                0
D19V3, multiclass
                  clus
vv                 10P GAIN CNV 10P GAIN WILD-TYPE
  OMENTUM                     0                  2
  OVARY                     128                420
  PERITONEUM OVARY            2                  0
D19V4, continuous
                    vv
clus                 I+II III  IV
  10P GAIN CNV          0  31   8
  10P GAIN WILD-TYPE    4 102  26
D19V5, multiclass
      clus
vv     10P GAIN CNV 10P GAIN WILD-TYPE
  I+II            0                  4
  III            31                102
  IV              8                 26
D19V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN CNV          0  130
  10P GAIN WILD-TYPE    3  429
     clus
vv    10P GAIN CNV 10P GAIN WILD-TYPE
  NO             0                  3
  YES          130                429
                    vv
clus                 R0 R1 R2
  10P GAIN CNV        3  9  1
  10P GAIN WILD-TYPE 11 17  1
D19V7, multiclass
    clus
vv   10P GAIN CNV 10P GAIN WILD-TYPE
  R0            3                 11
  R1            9                 17
  R2            1                  1

Clustering(20) Variable = 10q gain
D20V1, survival
                    sevent
clus2                  0   1
  10Q GAIN CNV        28  38
  10Q GAIN WILD-TYPE 235 246
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                66                481 
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                38                246 
$`10Q GAIN CNV`
TCGA-04-1332 TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 TCGA-04-1542 TCGA-04-1646 
       41.00        21.57        63.98        49.28        84.20        27.88 
TCGA-04-1655 TCGA-09-0365 TCGA-09-1661 TCGA-09-1668 TCGA-09-1672 TCGA-09-1674 
       45.34         9.47        38.43        55.36         5.85         8.55 
TCGA-09-2055 TCGA-10-0933 TCGA-13-0727 TCGA-13-0730 TCGA-13-0802 TCGA-13-0884 
       26.93        11.70        15.19        17.79         8.19       107.18 
TCGA-13-0885 TCGA-13-1477 TCGA-13-1484 TCGA-13-2061 TCGA-20-1685 TCGA-23-1021 
       91.40        54.61        98.04        10.78        16.67        47.54 
TCGA-23-1022 TCGA-23-1110 TCGA-23-1123 TCGA-23-1124 TCGA-23-2077 TCGA-23-2643 
       42.51        54.51        33.47        58.13       115.89         4.70 
TCGA-24-1424 TCGA-24-1427 TCGA-24-1428 TCGA-24-1548 TCGA-24-1564 TCGA-24-1616 
        6.02         4.80        17.36        16.21        25.87        38.24 
TCGA-24-2261 TCGA-25-1312 TCGA-25-1317 TCGA-25-1321 TCGA-25-1623 TCGA-25-1634 
        0.79         1.02         1.02        33.96        18.58        35.54 
TCGA-25-1877 TCGA-29-1702 TCGA-29-1783 TCGA-29-2425 TCGA-29-2428 TCGA-29-2432 
       18.05        18.64         7.20        65.00        45.11        11.84 
TCGA-31-1950 TCGA-36-1578 TCGA-36-1580 TCGA-36-2529 TCGA-36-2548 TCGA-36-2552 
       18.77        27.85        24.23        35.05        14.17        11.47 
TCGA-57-1582 TCGA-57-1583 TCGA-57-1994 TCGA-59-2352 TCGA-61-1730 TCGA-61-1907 
       24.03        11.38        25.02         9.40         4.34        31.30 
TCGA-61-1915 TCGA-61-1919 TCGA-61-2003 TCGA-61-2098 TCGA-61-2101 TCGA-61-2612 
       67.73        38.17         3.98        65.49        55.50         6.35 

$`10Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24         1.81        49.15         2.01        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1351 TCGA-04-1361 
       11.87        65.49        63.06        48.76        65.46        32.52 
TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 
       44.32        33.67        76.54        71.47        82.36        56.55 
TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 
       41.59        19.99        38.37       119.08        29.06        55.40 
TCGA-04-1644 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 
       48.89        28.64        64.64        36.23        31.86        47.70 
TCGA-09-0364 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 
       29.16        57.73        17.95        35.54         9.96        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1669 TCGA-09-1670 
       74.89        41.59        57.57        61.87        30.48        17.98 
TCGA-09-1673 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 
        3.02        97.55         6.15         6.12        35.15         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2056 
      112.37        71.11        63.09        39.75        20.91        12.46 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 
       54.31        25.91        81.47        18.48        33.24        32.28 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 
        3.88        35.41        35.80        15.12        19.86         6.21 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 
       24.59        44.55        39.58         2.73        12.39        31.07 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       55.17         2.47        11.18        11.38        11.54        34.06 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       32.25        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       28.70        30.35        19.56         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.28        43.82        35.28        35.28        13.61        68.91 
TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
       74.27        66.64        70.39        61.81        67.99        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 
       43.36        57.47        56.15        57.07        19.36        47.38 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       48.33        47.84        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       34.06        29.98        21.14        14.89        13.81         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
        6.41         6.08        10.88         6.61         7.36         6.05 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1481 
        5.92         6.84         4.70         4.21         5.33        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 
       61.71        29.39        20.68        22.39        70.82        82.88 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 
       52.44        73.55        38.17        49.22         4.24        54.31 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       37.61        38.37        13.97        32.84        16.57         4.21 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
        4.41         4.77         4.14         2.56         3.88         3.09 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 
       14.24        12.23         8.58         8.75         6.28        23.05 
TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 
       25.94        26.20        72.20        27.48        25.38        19.07 
TCGA-20-1686 TCGA-20-1687 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
        2.93         2.66        40.54        15.39        26.83        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 
       49.41         8.81        29.10        18.87         2.24        51.35 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
        3.22        31.20        68.68         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1809 TCGA-23-2072 
      129.96         4.27         6.38        39.09         0.53        24.95 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2645 
       87.48        91.66        77.00        49.84         2.76         4.50 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       22.32        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 
        7.82         7.99         7.86         0.76         6.25         5.95 
TCGA-24-1426 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 
        5.36        28.34        19.17        18.67        43.53         8.55 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
       72.92        12.46        45.14       105.99         9.11         3.42 
TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 
        1.18        22.19        26.96        57.37        64.27        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 
       41.06        51.91        41.39        58.09        88.50        70.62 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1565 
       39.88        19.53        44.09        45.50        47.70        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1842 TCGA-24-1843 
       17.23        90.15        88.34        48.33         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
        3.72         3.81         4.37        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        9.80        22.65        30.21        16.41        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 
        4.87       151.99        44.84        58.16        34.82       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
       14.43        53.95        18.48        28.18        64.01        44.48 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 
       57.07        36.16         0.36        47.54        31.63        70.45 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 
       44.58         0.82        67.36        36.23        16.64        33.11 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       55.86        53.26        26.93        31.99        51.06        37.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 
       34.98        65.00        36.95         2.99        12.00         2.96 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 
       18.02        15.78         0.36        20.58         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 
       56.94        60.59        51.22        14.93        24.99        85.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 
       13.02        49.05         1.02        38.04         3.02        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
       45.01        19.99        42.02         2.96        29.00        30.97 
TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 
       26.96        78.87        44.71        47.18       101.75        38.53 
TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 
        0.79        33.70        31.17        68.28         0.53        16.90 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       59.67        18.25        41.95        29.23        34.62        17.00 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       85.68        66.77        62.93        39.09        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 
       24.36        22.52        17.29        12.36        11.84        12.30 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 
       14.93         8.35         5.36        34.62        86.17        62.47 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
        4.87        42.25        11.47         9.76        38.07        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 
       36.26         2.47        15.68         0.26        48.07        44.91 
TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       34.78         6.08        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1951 TCGA-31-1953 
       30.05        48.79        45.57        30.18        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       42.51        44.09         2.17        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1581 
       22.85        22.55         8.55        30.05        25.74        24.69 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       33.01        29.49        29.79        25.91        25.08        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2549 
       21.60         2.24        20.98        18.31        20.52         6.05 
TCGA-36-2551 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       16.14        14.30         9.07         9.44         7.56         7.46 
TCGA-42-2591 TCGA-42-2593 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 
        7.63         1.48        21.14         1.74        22.32        28.96 
TCGA-57-1993 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2354 
       25.05       180.16        80.12        22.32       116.12        34.39 
TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
        2.14         5.39        44.78        11.11         8.05        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 
       31.40        18.54        27.88        31.76        28.47        48.79 
TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 
       44.84        35.80         2.43        33.67        43.69         1.41 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
        8.42         5.79        11.41        13.02         9.07        34.13 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1917 TCGA-61-1918 
       37.02        42.48        48.92        56.58        43.43        15.75 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 TCGA-61-2009 
        1.97         5.52        14.50        17.98        30.61        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       30.64         1.18        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2102 
       51.72        71.74        61.64        58.39        60.62         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2613 
       76.83        20.68        44.52       125.72        22.22        31.07 
TCGA-61-2614 
        8.58 

      10Q GAIN CNV 10Q GAIN WILD-TYPE 
              0.79               0.26 
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
            115.89             180.16 
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
            24.625             28.730 
[1] "0.8 - 115.9 (24.6)" "0.3 - 180.2 (28.7)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV"       "10Q GAIN CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "10Q GAIN CNV"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "10Q GAIN CNV"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-61-2614 
"10Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV"       "10Q GAIN CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "10Q GAIN CNV"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "10Q GAIN CNV"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-61-2614 
"10Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV"       "10Q GAIN CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "10Q GAIN CNV"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "10Q GAIN CNV"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-61-2614 
"10Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D20V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  10Q GAIN CNV             0    66                1
  10Q GAIN WILD-TYPE       2   482                1
D20V3, multiclass
                  clus
vv                 10Q GAIN CNV 10Q GAIN WILD-TYPE
  OMENTUM                     0                  2
  OVARY                      66                482
  PERITONEUM OVARY            1                  1
D20V4, continuous
                    vv
clus                 I+II III  IV
  10Q GAIN CNV          0  14   2
  10Q GAIN WILD-TYPE    4 119  32
D20V5, multiclass
      clus
vv     10Q GAIN CNV 10Q GAIN WILD-TYPE
  I+II            0                  4
  III            14                119
  IV              2                 32
D20V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN CNV          0   67
  10Q GAIN WILD-TYPE    3  492
     clus
vv    10Q GAIN CNV 10Q GAIN WILD-TYPE
  NO             0                  3
  YES           67                492
                    vv
clus                 R0 R1 R2
  10Q GAIN CNV        1  6  0
  10Q GAIN WILD-TYPE 13 20  2
D20V7, multiclass
    clus
vv   10Q GAIN CNV 10Q GAIN WILD-TYPE
  R0            1                 13
  R1            6                 20
  R2            0                  2

Clustering(21) Variable = 11p gain
D21V1, survival
                    sevent
clus2                  0   1
  11P GAIN CNV        21  19
  11P GAIN WILD-TYPE 242 265
      11P GAIN CNV 11P GAIN WILD-TYPE 
                40                507 
      11P GAIN CNV 11P GAIN WILD-TYPE 
                19                265 
$`11P GAIN CNV`
TCGA-04-1343 TCGA-04-1346 TCGA-04-1350 TCGA-09-2043 TCGA-10-0931 TCGA-13-0724 
       11.87        65.49        63.98         6.15        32.28         2.73 
TCGA-13-0727 TCGA-13-0797 TCGA-13-1407 TCGA-13-1410 TCGA-13-1497 TCGA-13-2057 
       15.19         8.71         6.05         4.70        54.31        14.24 
TCGA-23-1021 TCGA-23-1024 TCGA-23-1026 TCGA-23-1029 TCGA-23-1030 TCGA-23-1109 
       47.54        15.39        26.83         8.81        29.10        51.35 
TCGA-23-1111 TCGA-23-2084 TCGA-23-2645 TCGA-24-1551 TCGA-24-1556 TCGA-24-1604 
        3.22        49.84         4.50        51.91        70.62        88.34 
TCGA-24-2030 TCGA-25-1312 TCGA-25-1321 TCGA-25-1877 TCGA-29-1701 TCGA-29-1775 
       53.95         1.02        33.96        18.05        16.90        12.36 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1862 TCGA-36-1574 TCGA-36-1578 TCGA-42-2587 
        0.26        48.07         6.08        22.55        27.85         9.07 
TCGA-59-2348 TCGA-61-1907 TCGA-61-1915 TCGA-61-2097 
      180.16        31.30        67.73        60.62 

$`11P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1351 TCGA-04-1356 
       18.51        63.06        48.76        21.57        65.46        49.28 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 
       32.52        44.32        33.67        76.54        71.47        82.36 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 
       56.55        41.59        19.99        38.37       119.08        29.06 
TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 
       84.20        55.40        48.89        27.88        28.64        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       36.23        31.86        47.70        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       57.73        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       74.89        41.59        57.57        61.87        55.36        30.48 
TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2044 
       17.98         5.85         3.02         8.55        97.55         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 
       35.15         4.50       112.37        71.11        63.09        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       20.91        26.93        12.46        54.31        25.91        81.47 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       18.48        33.24        11.70         3.88        35.41        35.80 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 
       15.12        19.86         6.21        24.59        44.55        39.58 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 
       12.39        31.07        17.79        55.17         2.47        11.18 
TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 
       11.38        11.54        34.06        32.25        31.04        21.40 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 
        8.42        38.93        36.72        28.70        30.35        19.56 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 
        7.79         8.12         8.28         8.19        43.82        35.28 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 
       35.28        13.61        68.91       107.18        91.40        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
       66.64        70.39        61.81        67.99        69.01        43.36 
TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 
       57.47        56.15        57.07        19.36        47.38        48.33 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       47.84        44.94        44.84        37.08        27.68        34.06 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 
       29.98        21.14        14.89        13.81         4.64         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 TCGA-13-1409 
        6.08        10.88         6.61         7.36         5.92         6.84 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.21         5.33        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 
       98.04        20.68        22.39        70.82        82.88        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 
       73.55        38.17        49.22         4.24        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 
       13.97        32.84        16.57         4.21         4.41         4.77 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2060 
        4.14         2.56         3.88         3.09        12.23         8.58 
TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
       10.78         8.75         6.28        23.05        25.94        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 
       72.20        27.48        25.38        19.07        16.67         2.93 
TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 TCGA-23-1027 TCGA-23-1028 TCGA-23-1031 
        2.66        42.51        40.54        31.73        49.41        18.87 
TCGA-23-1032 TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 
        2.24        54.51        31.20        68.68         4.57        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 
       86.01       129.96         4.27         6.38        39.09        33.47 
TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 
       58.13         0.53        24.95       115.89        87.48        91.66 
TCGA-23-2081 TCGA-23-2641 TCGA-23-2643 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
       77.00         2.76         4.70         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 
       21.80        41.56         7.66        22.32        54.08        63.55 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 
       47.41         6.31         6.38         7.82         7.99         7.86 
TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 
        0.76         6.25         6.02         5.95         5.36         4.80 
TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 
       17.36        28.34        19.17        18.67        43.53         8.55 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
       72.92        12.46        45.14       105.99         9.11         3.42 
TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 
        1.18        22.19        26.96        57.37        64.27        16.21 
TCGA-24-1549 TCGA-24-1550 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1557 
       56.58        41.06        41.39        58.09        88.50        39.88 
TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       19.53        44.09        45.50        47.70        25.87        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       17.23        90.15        48.33        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
        3.72         3.81         4.37        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        9.80        22.65        30.21        16.41        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 
        4.87       151.99        44.84        58.16        34.82       109.68 
TCGA-24-2029 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
       14.43        18.48        28.18        64.01        44.48        57.07 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 
       36.16         0.79         0.36        47.54        31.63        70.45 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 
       44.58         0.82        67.36        36.23        16.64        33.11 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       55.86        53.26        26.93        31.99        51.06        37.02 
TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 
        1.02        34.98        65.00        36.95         2.99        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
        2.96        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 
        7.86         0.30        56.94        60.59        35.54        51.22 
TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       14.93        24.99        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
       38.04         3.02        12.00        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
        2.96        29.00        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 
       47.18       101.75        38.53         0.79        33.70        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
       68.28         0.53        18.64        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 
       29.23        34.62        17.00        85.68        66.77        62.93 
TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 
       39.09        31.23        22.98        24.36        22.52        17.29 
TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 
       11.84        12.30        14.93         8.35         7.20         5.36 
TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
       34.62        86.17        65.00        62.47        45.11         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
       42.25        11.84        11.47         9.76        38.07        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 
       36.26         2.47        15.68        44.91        34.78        36.62 
TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 
        1.18        57.57        24.26        30.05        48.79        45.57 
TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 
       30.18        18.77        22.45         6.71        42.51        44.09 
TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1575 
        2.17        28.73        29.06        21.53        22.85         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 
       30.05        25.74        24.23        24.69        35.05        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 
       29.49        29.79        25.91        25.08        23.80        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 
        2.24        20.98        18.31        20.52        14.17         6.05 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       16.14        11.47        14.30         9.44         7.56         7.46 
TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 
        7.63         1.48        24.03        11.38        21.14         1.74 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2349 TCGA-59-2350 
       22.32        28.96        25.05        25.02        80.12        22.32 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
      116.12         9.40        34.39         2.14         5.39        44.78 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 
       11.11         8.05        20.94        31.40        18.54        27.88 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
        4.34        31.76        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 
        2.43        33.67        43.69         1.41         8.42         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 TCGA-61-1911 
       11.41        13.02         9.07        34.13        37.02        42.48 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       48.92        56.58        43.43        15.75        38.17         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 
        5.52        14.50        17.98         3.98        30.61        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       30.64         1.18        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 
       51.72        71.74        61.64        58.39        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 
        6.48        76.83        20.68        44.52       125.72        22.22 
TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        6.35        31.07         8.58 

      11P GAIN CNV 11P GAIN WILD-TYPE 
              0.26               0.30 
      11P GAIN CNV 11P GAIN WILD-TYPE 
            180.16             151.99 
      11P GAIN CNV 11P GAIN WILD-TYPE 
             24.69              28.47 
[1] "0.3 - 180.2 (24.7)" "0.3 - 152.0 (28.5)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"11P GAIN WILD-TYPE"       "11P GAIN CNV"       "11P GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"11P GAIN WILD-TYPE"       "11P GAIN CNV"       "11P GAIN CNV" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
      "11P GAIN CNV" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
      "11P GAIN CNV"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2614 
"11P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"11P GAIN WILD-TYPE"       "11P GAIN CNV"       "11P GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"11P GAIN WILD-TYPE"       "11P GAIN CNV"       "11P GAIN CNV" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
      "11P GAIN CNV" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
      "11P GAIN CNV"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2614 
"11P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"11P GAIN WILD-TYPE"       "11P GAIN CNV"       "11P GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"11P GAIN WILD-TYPE"       "11P GAIN CNV"       "11P GAIN CNV" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
      "11P GAIN CNV" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
      "11P GAIN CNV"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2614 
"11P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D21V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  11P GAIN CNV             0    40                0
  11P GAIN WILD-TYPE       2   508                2
D21V3, multiclass
                  clus
vv                 11P GAIN CNV 11P GAIN WILD-TYPE
  OMENTUM                     0                  2
  OVARY                      40                508
  PERITONEUM OVARY            0                  2
D21V4, continuous
                    vv
clus                 I+II III  IV
  11P GAIN CNV          0   7   4
  11P GAIN WILD-TYPE    4 126  30
D21V5, multiclass
      clus
vv     11P GAIN CNV 11P GAIN WILD-TYPE
  I+II            0                  4
  III             7                126
  IV              4                 30
D21V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN CNV          0   40
  11P GAIN WILD-TYPE    3  519
     clus
vv    11P GAIN CNV 11P GAIN WILD-TYPE
  NO             0                  3
  YES           40                519
                    vv
clus                 R0 R1 R2
  11P GAIN CNV        0  1  0
  11P GAIN WILD-TYPE 14 25  2
D21V7, multiclass
[1] "Remove cluster labels:" "11P GAIN CNV"          
clus
      11P GAIN CNV 11P GAIN WILD-TYPE 
                 1                 41 
        TCGA-04-1516         TCGA-04-1644         TCGA-13-0807 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-24-2033         TCGA-29-2414 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2425         TCGA-29-2427         TCGA-29-2428 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2429         TCGA-29-2431         TCGA-29-2432 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2434         TCGA-29-2436         TCGA-36-2529 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2530         TCGA-36-2532         TCGA-36-2534 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2537         TCGA-36-2538         TCGA-36-2540 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2542         TCGA-36-2543         TCGA-36-2544 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2545         TCGA-36-2547         TCGA-36-2548 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2549         TCGA-36-2551         TCGA-36-2552 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2593         TCGA-57-1993 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-59-2363         TCGA-59-2372         TCGA-61-2612 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 

Clustering(22) Variable = 11q gain
D22V1, survival
                    sevent
clus2                  0   1
  11Q GAIN CNV        27  33
  11Q GAIN WILD-TYPE 236 251
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                60                487 
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                33                251 
$`11Q GAIN CNV`
TCGA-04-1343 TCGA-04-1346 TCGA-04-1350 TCGA-04-1652 TCGA-09-1661 TCGA-09-1668 
       11.87        65.49        63.98        31.86        38.43        55.36 
TCGA-10-0931 TCGA-13-0726 TCGA-13-0764 TCGA-13-0797 TCGA-13-0893 TCGA-13-0897 
       32.28        31.07        31.04         8.71        43.36        57.47 
TCGA-13-1407 TCGA-13-1410 TCGA-13-1412 TCGA-13-1497 TCGA-13-1506 TCGA-13-2057 
        6.05         4.70         5.33        54.31         4.41        14.24 
TCGA-20-1685 TCGA-23-1021 TCGA-23-1022 TCGA-23-1024 TCGA-23-1029 TCGA-23-1030 
       16.67        47.54        42.51        15.39         8.81        29.10 
TCGA-23-1109 TCGA-23-1111 TCGA-23-2084 TCGA-23-2645 TCGA-24-1431 TCGA-24-1436 
       51.35         3.22        49.84         4.50        19.17         8.55 
TCGA-24-1551 TCGA-24-1556 TCGA-24-1558 TCGA-24-1563 TCGA-24-1604 TCGA-24-1616 
       51.91        70.62        19.53        47.70        88.34        38.24 
TCGA-24-1845 TCGA-24-2027 TCGA-24-2033 TCGA-25-1312 TCGA-25-1630 TCGA-25-1631 
        3.81       109.68        18.48         1.02         7.86         0.30 
TCGA-25-1877 TCGA-29-1701 TCGA-29-1702 TCGA-29-1783 TCGA-29-2425 TCGA-30-1856 
       18.05        16.90        18.64         7.20        65.00        15.68 
TCGA-30-1857 TCGA-30-1862 TCGA-36-1574 TCGA-36-1578 TCGA-42-2587 TCGA-57-1584 
        0.26         6.08        22.55        27.85         9.07        21.14 
TCGA-61-1907 TCGA-61-1915 TCGA-61-1918 TCGA-61-2097 TCGA-61-2109 TCGA-61-2612 
       31.30        67.73        15.75        60.62        20.68         6.35 

$`11Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1351 TCGA-04-1356 
       18.51        63.06        48.76        21.57        65.46        49.28 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 
       32.52        44.32        33.67        76.54        71.47        82.36 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 
       56.55        41.59        19.99        38.37       119.08        29.06 
TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 
       84.20        55.40        48.89        27.88        28.64        64.64 
TCGA-04-1651 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 
       36.23        47.70        45.34        29.16         9.47        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 
       17.95        35.54         9.96        89.33        74.89        41.59 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       57.57        61.87        30.48        17.98         5.85         3.02 
TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 
        8.55        97.55         6.15         6.12        35.15         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 
      112.37        71.11        63.09        39.75        20.91        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
       12.46        54.31        25.91        81.47        18.48        33.24 
TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 
       11.70         3.88        35.41        35.80        15.12        19.86 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
        6.21        24.59        44.55        39.58         2.73        12.39 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       15.19        17.79        55.17         2.47        11.18        11.38 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       11.54        34.06        32.25        21.40         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0799 TCGA-13-0800 
       36.72        28.70        30.35        19.56         7.79         8.12 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.28         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 
       68.91       107.18        91.40        74.27        66.64        70.39 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       61.81        67.99        69.01        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       47.38        48.33        47.84        44.94        44.84        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 
       27.68        34.06        29.98        21.14        14.89        13.81 
TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 
        4.64         6.41         6.08        10.88         6.61         7.36 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1411 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
        5.92         6.84         4.21        54.61        87.06        61.71 
TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 
       29.39        98.04        20.68        22.39        70.82        82.88 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1498 
       52.44        73.55        38.17        49.22         4.24        37.61 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1507 
       38.37        13.97        32.84        16.57         4.21         4.77 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2060 
        4.14         2.56         3.88         3.09        12.23         8.58 
TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
       10.78         8.75         6.28        23.05        25.94        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1686 TCGA-20-1687 
       72.20        27.48        25.38        19.07         2.93         2.66 
TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1031 TCGA-23-1032 
       40.54        26.83        31.73        49.41        18.87         2.24 
TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
       54.51        31.20        68.68         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
      129.96         4.27         6.38        39.09        33.47        58.13 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
        0.53        24.95       115.89        87.48        91.66        77.00 
TCGA-23-2641 TCGA-23-2643 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        2.76         4.70         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       41.56         7.66        22.32        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 
        6.31         6.38         7.82         7.99         7.86         0.76 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        6.25         6.02         5.95         5.36         4.80        17.36 
TCGA-24-1430 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 
       28.34        18.67        43.53        72.92        12.46        45.14 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 
      105.99         9.11         3.42         1.18        22.19        26.96 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1552 
       57.37        64.27        16.21        56.58        41.06        41.39 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1557 TCGA-24-1560 TCGA-24-1562 TCGA-24-1564 
       58.09        88.50        39.88        44.09        45.50        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 TCGA-24-1842 TCGA-24-1843 
       10.26        17.23        90.15        48.33         8.32         3.48 
TCGA-24-1844 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.72         4.37        11.28         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 
       22.65        30.21        16.41        11.05        81.11         4.87 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2029 TCGA-24-2030 
      151.99        44.84        58.16        34.82        14.43        53.95 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 
       28.18        64.01        44.48        57.07        36.16         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
        0.36        47.54        31.63        70.45        44.58         0.82 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 
       67.36        36.23        16.64        33.11        55.86        53.26 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 
       26.93        31.99        51.06        37.02         1.02        34.98 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 
       65.00        36.95        33.96         2.99        12.00         2.96 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1632 
       18.58        18.02        15.78         0.36        20.58        56.94 
TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 
       60.59        35.54        51.22        14.93        24.99        85.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 
       13.02        49.05         1.02        38.04         3.02        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
       45.01        19.99        42.02         2.96        29.00        30.97 
TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 
       26.96        78.87        44.71        47.18       101.75        38.53 
TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1703 
        0.79        33.70        31.17        68.28         0.53        59.67 
TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 
       18.25        41.95        29.23        34.62        17.00        85.68 
TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 
       66.77        62.93        39.09        31.23        22.98        24.36 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       22.52        17.29        12.36        11.84        12.30        14.93 
TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 TCGA-29-2428 
        8.35         5.36        34.62        86.17        62.47        45.11 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 
        4.87        42.25        11.84        11.47         9.76        38.07 
TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 
       51.91        36.26         2.47        48.07        44.91        34.78 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
       36.62         1.18        57.57        24.26        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       45.57        30.18        18.77        22.45         6.71        42.51 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       44.09         2.17        28.73        29.06        21.53        22.85 
TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 
        8.55        30.05        25.74        24.23        24.69        35.05 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       33.01        29.49        29.79        25.91        25.08        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 
       21.60         2.24        20.98        18.31        20.52        14.17 
TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 
        6.05        16.14        11.47        14.30         9.44         7.56 
TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1585 
        7.46         7.63         1.48        24.03        11.38         1.74 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       22.32        28.96        25.05        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       22.32       116.12         9.40        34.39         2.14         5.39 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 
       44.78        11.11         8.05        20.94        31.40        18.54 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       27.88         4.34        31.76        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 
       35.80         2.43        33.67        43.69         1.41         8.42 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 
        5.79        11.41        13.02         9.07        34.13        37.02 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1917 TCGA-61-1919 TCGA-61-1995 
       42.48        48.92        56.58        43.43        38.17         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 
        5.52        14.50        17.98         3.98        30.61        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       30.64         1.18        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 
       51.72        71.74        61.64        58.39        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2613 
        6.48        76.83        44.52       125.72        22.22        31.07 
TCGA-61-2614 
        8.58 

      11Q GAIN CNV 11Q GAIN WILD-TYPE 
              0.26               0.36 
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
            109.68             180.16 
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
            20.105             28.700 
[1] "0.3 - 109.7 (20.1)" "0.4 - 180.2 (28.7)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV"       "11Q GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV"       "11Q GAIN CNV" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV"       "11Q GAIN CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
      "11Q GAIN CNV"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "11Q GAIN CNV"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-61-2614 
"11Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV"       "11Q GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV"       "11Q GAIN CNV" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV"       "11Q GAIN CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
      "11Q GAIN CNV"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "11Q GAIN CNV"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-61-2614 
"11Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV"       "11Q GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV"       "11Q GAIN CNV" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV"       "11Q GAIN CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
      "11Q GAIN CNV"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "11Q GAIN CNV"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-61-2614 
"11Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D22V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  11Q GAIN CNV             0    60                0
  11Q GAIN WILD-TYPE       2   488                2
D22V3, multiclass
                  clus
vv                 11Q GAIN CNV 11Q GAIN WILD-TYPE
  OMENTUM                     0                  2
  OVARY                      60                488
  PERITONEUM OVARY            0                  2
D22V4, continuous
                    vv
clus                 I+II III  IV
  11Q GAIN CNV          0  11   6
  11Q GAIN WILD-TYPE    4 122  28
D22V5, multiclass
      clus
vv     11Q GAIN CNV 11Q GAIN WILD-TYPE
  I+II            0                  4
  III            11                122
  IV              6                 28
D22V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN CNV          0   61
  11Q GAIN WILD-TYPE    3  498
     clus
vv    11Q GAIN CNV 11Q GAIN WILD-TYPE
  NO             0                  3
  YES           61                498
                    vv
clus                 R0 R1 R2
  11Q GAIN CNV        0  4  0
  11Q GAIN WILD-TYPE 14 22  2
D22V7, multiclass
    clus
vv   11Q GAIN CNV 11Q GAIN WILD-TYPE
  R0            0                 14
  R1            4                 22
  R2            0                  2

Clustering(23) Variable = 12p gain
D23V1, survival
                    sevent
clus2                  0   1
  12P GAIN CNV        93 104
  12P GAIN WILD-TYPE 170 180
      12P GAIN CNV 12P GAIN WILD-TYPE 
               197                350 
      12P GAIN CNV 12P GAIN WILD-TYPE 
               104                180 
$`12P GAIN CNV`
TCGA-04-1332 TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1351 TCGA-04-1356 
       41.00        18.51        65.49        63.06        65.46        49.28 
TCGA-04-1362 TCGA-04-1371 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1536 
       44.32        82.36        41.59        19.99        38.37        29.06 
TCGA-04-1542 TCGA-04-1646 TCGA-04-1652 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       84.20        27.88        31.86        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1661 TCGA-09-1668 TCGA-09-1672 
       57.73        17.95        35.54        38.43        55.36         5.85 
TCGA-09-1674 TCGA-09-2043 TCGA-09-2048 TCGA-09-2049 TCGA-09-2051 TCGA-10-0926 
        8.55         6.15         4.50       112.37        63.09        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-13-0717 
       81.47        18.48        33.24        32.28        11.70        24.59 
TCGA-13-0723 TCGA-13-0727 TCGA-13-0730 TCGA-13-0757 TCGA-13-0760 TCGA-13-0762 
       39.58        15.19        17.79        11.18        11.54        32.25 
TCGA-13-0764 TCGA-13-0792 TCGA-13-0795 TCGA-13-0800 TCGA-13-0802 TCGA-13-0883 
       31.04        36.72        19.56         8.12         8.19        68.91 
TCGA-13-0884 TCGA-13-0888 TCGA-13-0899 TCGA-13-0901 TCGA-13-0906 TCGA-13-0912 
      107.18        70.39        56.15        19.36        44.94        34.06 
TCGA-13-0920 TCGA-13-0923 TCGA-13-1407 TCGA-13-1411 TCGA-13-1485 TCGA-13-1495 
       13.81         6.41         6.05         4.21        20.68        49.22 
TCGA-13-1496 TCGA-13-1499 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-2057 
        4.24        38.37        16.57         4.21         4.41        14.24 
TCGA-13-2059 TCGA-13-2060 TCGA-20-1682 TCGA-20-1686 TCGA-23-1021 TCGA-23-1024 
       12.23         8.58        27.48         2.93        47.54        15.39 
TCGA-23-1111 TCGA-23-1114 TCGA-23-1116 TCGA-23-1124 TCGA-23-1809 TCGA-23-2079 
        3.22        68.68         4.57        58.13         0.53        91.66 
TCGA-23-2643 TCGA-23-2645 TCGA-24-1418 TCGA-24-1422 TCGA-24-1424 TCGA-24-1427 
        4.70         4.50         7.99         0.76         6.02         4.80 
TCGA-24-1430 TCGA-24-1436 TCGA-24-1466 TCGA-24-1469 TCGA-24-1474 TCGA-24-1544 
       28.34         8.55        45.14         9.11        22.19        26.96 
TCGA-24-1545 TCGA-24-1548 TCGA-24-1553 TCGA-24-1558 TCGA-24-1560 TCGA-24-1563 
       57.37        16.21        58.09        19.53        44.09        47.70 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1844 
       10.26        17.23        88.34        48.33        38.24         3.72 
TCGA-24-1845 TCGA-24-1850 TCGA-24-1920 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 
        3.81         5.49         9.80        81.11         4.87       151.99 
TCGA-24-2033 TCGA-24-2038 TCGA-24-2260 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
       18.48        44.48        36.16        44.58         0.82        67.36 
TCGA-24-2295 TCGA-25-1312 TCGA-25-1315 TCGA-25-1321 TCGA-25-1323 TCGA-25-1626 
       33.11         1.02        51.06        33.96        12.00        15.78 
TCGA-25-1627 TCGA-25-1630 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 
        0.36         7.86        35.54        51.22        14.93        24.99 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 
       18.05        85.05        13.02         1.02        38.04         3.02 
TCGA-25-2398 TCGA-25-2400 TCGA-29-1690 TCGA-29-1695 TCGA-29-1698 TCGA-29-1699 
       45.01        42.02        44.71         0.79        68.28         0.53 
TCGA-29-1702 TCGA-29-1710 TCGA-29-1761 TCGA-29-1763 TCGA-29-1766 TCGA-29-1768 
       18.64        29.23        17.00        66.77        39.09        31.23 
TCGA-29-1769 TCGA-29-1774 TCGA-29-1775 TCGA-29-1777 TCGA-29-1778 TCGA-29-1783 
       22.98        17.29        12.36        12.30        14.93         7.20 
TCGA-29-1784 TCGA-29-2414 TCGA-29-2425 TCGA-29-2428 TCGA-29-2431 TCGA-30-1856 
        5.36        86.17        65.00        45.11        42.25        15.68 
TCGA-30-1859 TCGA-30-1867 TCGA-30-1887 TCGA-30-1891 TCGA-31-1950 TCGA-31-1955 
       48.07         1.18        24.26        30.05        18.77        42.51 
TCGA-31-1959 TCGA-36-1569 TCGA-36-1571 TCGA-36-1575 TCGA-36-1576 TCGA-36-1580 
        2.17        29.06        22.85         8.55        30.05        24.23 
TCGA-36-2529 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-57-1583 TCGA-57-1586 
       35.05        14.17        16.14        11.47        11.38        22.32 
TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2351 TCGA-59-2352 TCGA-59-2363 
       25.05        25.02       180.16       116.12         9.40         5.39 
TCGA-59-2372 TCGA-61-1722 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1743 
       44.78         8.05        27.88         4.34        31.76        43.69 
TCGA-61-1895 TCGA-61-1900 TCGA-61-1904 TCGA-61-1907 TCGA-61-1915 TCGA-61-2002 
        1.41         5.79         9.07        31.30        67.73        17.98 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2097 TCGA-61-2612 TCGA-61-2614 
       39.85        30.64        60.62         6.35         8.58 

$`12P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1343 
       40.24         1.81        49.15         2.01        46.62        11.87 
TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1361 TCGA-04-1364 TCGA-04-1365 
       48.76        21.57        63.98        32.52        33.67        76.54 
TCGA-04-1367 TCGA-04-1514 TCGA-04-1530 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 
       71.47        56.55       119.08        55.40        48.89        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1654 TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 
       64.64        36.23        47.70         9.96        89.33        74.89 
TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 
       41.59        57.57        61.87        30.48        17.98         3.02 
TCGA-09-1675 TCGA-09-2044 TCGA-09-2045 TCGA-09-2050 TCGA-09-2053 TCGA-09-2054 
       97.55         6.12        35.15        71.11        39.75        20.91 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       26.93        12.46        54.31         3.88        35.41        35.80 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 
       15.12        19.86         6.21        44.55         2.73        12.39 
TCGA-13-0726 TCGA-13-0751 TCGA-13-0755 TCGA-13-0758 TCGA-13-0761 TCGA-13-0766 
       31.07        55.17         2.47        11.38        34.06        21.40 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 
        8.42        38.93        28.70        30.35         8.71         7.79 
TCGA-13-0801 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0885 
        8.28        43.82        35.28        35.28        13.61        91.40 
TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
       74.27        66.64        61.81        67.99        69.01        43.36 
TCGA-13-0897 TCGA-13-0900 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0908 
       57.47        57.07        47.38        48.33        47.84        44.84 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0921 
       37.08        27.68        29.98        21.14        14.89         4.64 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 TCGA-13-1409 
        6.08        10.88         6.61         7.36         5.92         6.84 
TCGA-13-1410 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.70         5.33        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 
       98.04        22.39        70.82        82.88        52.44        73.55 
TCGA-13-1494 TCGA-13-1497 TCGA-13-1498 TCGA-13-1500 TCGA-13-1501 TCGA-13-1507 
       38.17        54.31        37.61        13.97        32.84         4.77 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2061 TCGA-13-2065 
        4.14         2.56         3.88         3.09        10.78         8.75 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1683 
        6.28        23.05        25.94        26.20        72.20        25.38 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 
       19.07        16.67         2.66        42.51        40.54        26.83 
TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       31.73        49.41         8.81        29.10        18.87         2.24 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1113 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
       51.35        54.51        31.20        33.30        86.01       129.96 
TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 TCGA-23-2077 
        4.27         6.38        39.09        33.47        24.95       115.89 
TCGA-23-2078 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-24-0966 TCGA-24-0968 
       87.48        77.00        49.84         2.76         7.63        19.63 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 
       11.64        21.80        41.56         7.66        22.32        54.08 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1419 
       63.55        47.41         6.31         6.38         7.82         7.86 
TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 TCGA-24-1428 TCGA-24-1431 TCGA-24-1434 
        6.25         5.95         5.36        17.36        19.17        18.67 
TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 TCGA-24-1467 TCGA-24-1470 TCGA-24-1471 
       43.53        72.92        12.46       105.99         3.42         1.18 
TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1555 
       64.27        56.58        41.06        51.91        41.39        88.50 
TCGA-24-1556 TCGA-24-1557 TCGA-24-1562 TCGA-24-1564 TCGA-24-1603 TCGA-24-1842 
       70.62        39.88        45.50        25.87        90.15         8.32 
TCGA-24-1843 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1923 TCGA-24-1924 
        3.48         4.37        11.28         5.75        22.65        30.21 
TCGA-24-1927 TCGA-24-1928 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 
       16.41        11.05        44.84        58.16        34.82       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 TCGA-24-2254 TCGA-24-2261 
       14.43        53.95        28.18        64.01        57.07         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2290 TCGA-24-2293 
        0.36        47.54        31.63        70.45        36.23        16.64 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 TCGA-25-1316 TCGA-25-1317 
       55.86        53.26        26.93        31.99        37.02         1.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1322 TCGA-25-1329 TCGA-25-1623 
       34.98        65.00        36.95         2.99         2.96        18.58 
TCGA-25-1625 TCGA-25-1628 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-2391 
       18.02        20.58         0.30        56.94        60.59        49.05 
TCGA-25-2397 TCGA-25-2399 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       12.00        19.99         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 
       78.87        47.18       101.75        38.53        33.70        31.17 
TCGA-29-1701 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1711 TCGA-29-1762 
       16.90        59.67        18.25        41.95        34.62        85.68 
TCGA-29-1764 TCGA-29-1770 TCGA-29-1771 TCGA-29-1776 TCGA-29-1781 TCGA-29-1785 
       62.93        24.36        22.52        11.84         8.35        34.62 
TCGA-29-2427 TCGA-29-2429 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 
       62.47         4.87        11.84        11.47         9.76        38.07 
TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1857 TCGA-30-1860 TCGA-30-1861 
       51.91        36.26         2.47         0.26        44.91        34.78 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1880 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
        6.08        36.62        57.57        48.79        45.57        30.18 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1956 TCGA-36-1568 TCGA-36-1570 TCGA-36-1574 
       22.45         6.71        44.09        28.73        21.53        22.55 
TCGA-36-1577 TCGA-36-1578 TCGA-36-1581 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       25.74        27.85        24.69        33.01        29.49        29.79 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       25.91        25.08        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2549 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 
       18.31        20.52         6.05        14.30         9.07         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1584 
        7.56         7.46         7.63         1.48        24.03        21.14 
TCGA-57-1585 TCGA-57-1992 TCGA-59-2349 TCGA-59-2350 TCGA-59-2354 TCGA-59-2355 
        1.74        28.96        80.12        22.32        34.39         2.14 
TCGA-61-1721 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1734 TCGA-61-1736 
       11.11        20.94        31.40        18.54        28.47        48.79 
TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1899 TCGA-61-1901 
       44.84        35.80         2.43        33.67         8.42        11.41 
TCGA-61-1903 TCGA-61-1906 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
       13.02        34.13        37.02        42.48        48.92        56.58 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       43.43        15.75        38.17         1.97         5.52        14.50 
TCGA-61-2003 TCGA-61-2008 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
        3.98        30.61         1.18        45.96        45.40         4.80 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 
        4.77        51.72        71.74        61.64        58.39        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
       55.50         6.48        76.83        20.68        44.52       125.72 
TCGA-61-2113 TCGA-61-2613 
       22.22        31.07 

      12P GAIN CNV 12P GAIN WILD-TYPE 
              0.36               0.26 
      12P GAIN CNV 12P GAIN WILD-TYPE 
            180.16             129.96 
      12P GAIN CNV 12P GAIN WILD-TYPE 
             24.26              29.64 
[1] "0.4 - 180.2 (24.3)" "0.3 - 130.0 (29.6)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "12P GAIN CNV"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
      "12P GAIN CNV"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
      "12P GAIN CNV"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "12P GAIN CNV"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "12P GAIN CNV"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
      "12P GAIN CNV"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
      "12P GAIN CNV"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-61-2614 
      "12P GAIN CNV" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "12P GAIN CNV"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
      "12P GAIN CNV"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
      "12P GAIN CNV"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "12P GAIN CNV"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "12P GAIN CNV"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
      "12P GAIN CNV"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
      "12P GAIN CNV"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-61-2614 
      "12P GAIN CNV" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "12P GAIN CNV"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
      "12P GAIN CNV"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
      "12P GAIN CNV"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "12P GAIN CNV"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "12P GAIN CNV"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
      "12P GAIN CNV"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
      "12P GAIN CNV"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-61-2614 
      "12P GAIN CNV" 
[1] "hr=" "1.1"
D23V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  12P GAIN CNV             0   199                2
  12P GAIN WILD-TYPE       2   349                0
D23V3, multiclass
                  clus
vv                 12P GAIN CNV 12P GAIN WILD-TYPE
  OMENTUM                     0                  2
  OVARY                     199                349
  PERITONEUM OVARY            2                  0
D23V4, continuous
                    vv
clus                 I+II III IV
  12P GAIN CNV          1  42  8
  12P GAIN WILD-TYPE    3  91 26
D23V5, multiclass
      clus
vv     12P GAIN CNV 12P GAIN WILD-TYPE
  I+II            1                  3
  III            42                 91
  IV              8                 26
D23V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN CNV          1  206
  12P GAIN WILD-TYPE    2  353
     clus
vv    12P GAIN CNV 12P GAIN WILD-TYPE
  NO             1                  2
  YES          206                353
                    vv
clus                 R0 R1 R2
  12P GAIN CNV        6  9  0
  12P GAIN WILD-TYPE  8 17  2
D23V7, multiclass
    clus
vv   12P GAIN CNV 12P GAIN WILD-TYPE
  R0            6                  8
  R1            9                 17
  R2            0                  2

Clustering(24) Variable = 12q gain
D24V1, survival
                    sevent
clus2                  0   1
  12Q GAIN CNV        49  65
  12Q GAIN WILD-TYPE 214 219
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
               114                433 
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                65                219 
$`12Q GAIN CNV`
TCGA-04-1332 TCGA-04-1337 TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1362 
       41.00         2.01        18.51        65.49        63.06        44.32 
TCGA-04-1525 TCGA-04-1646 TCGA-04-1652 TCGA-04-1655 TCGA-09-0365 TCGA-09-0366 
       38.37        27.88        31.86        45.34         9.47        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1668 TCGA-09-1672 TCGA-09-2048 TCGA-09-2049 
       17.95        35.54        55.36         5.85         4.50       112.37 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0930 TCGA-10-0936 TCGA-13-0717 TCGA-13-0723 
       25.91        81.47        33.24        35.80        24.59        39.58 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0795 TCGA-13-0800 TCGA-13-0804 TCGA-13-0884 
       15.19        17.79        19.56         8.12        35.28       107.18 
TCGA-13-0888 TCGA-13-0912 TCGA-13-0920 TCGA-13-1407 TCGA-13-1485 TCGA-13-1496 
       70.39        34.06        13.81         6.05        20.68         4.24 
TCGA-13-1506 TCGA-13-2057 TCGA-13-2060 TCGA-20-1686 TCGA-23-1021 TCGA-23-1111 
        4.41        14.24         8.58         2.93        47.54         3.22 
TCGA-23-1116 TCGA-23-1809 TCGA-23-2643 TCGA-24-1418 TCGA-24-1419 TCGA-24-1424 
        4.57         0.53         4.70         7.99         7.86         6.02 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1469 TCGA-24-1474 TCGA-24-1544 TCGA-24-1548 
       12.46        45.14         9.11        22.19        26.96        16.21 
TCGA-24-1558 TCGA-24-1560 TCGA-24-1563 TCGA-24-1565 TCGA-24-1616 TCGA-24-1845 
       19.53        44.09        47.70        10.26        38.24         3.81 
TCGA-24-1850 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2033 TCGA-24-2038 
        5.49        81.11         4.87       151.99        18.48        44.48 
TCGA-24-2260 TCGA-24-2281 TCGA-24-2288 TCGA-24-2295 TCGA-25-1312 TCGA-25-1321 
       36.16        44.58         0.82        33.11         1.02        33.96 
TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-2392 TCGA-25-2398 TCGA-29-1690 
       35.54        14.93        24.99         1.02        45.01        44.71 
TCGA-29-1695 TCGA-29-1761 TCGA-29-1763 TCGA-29-1768 TCGA-29-1774 TCGA-29-1778 
        0.79        17.00        66.77        31.23        17.29        14.93 
TCGA-29-1783 TCGA-29-2414 TCGA-29-2425 TCGA-29-2428 TCGA-29-2431 TCGA-30-1856 
        7.20        86.17        65.00        45.11        42.25        15.68 
TCGA-30-1859 TCGA-30-1867 TCGA-31-1950 TCGA-31-1959 TCGA-36-1571 TCGA-36-1575 
       48.07         1.18        18.77         2.17        22.85         8.55 
TCGA-36-2529 TCGA-36-2548 TCGA-36-2551 TCGA-57-1583 TCGA-57-1586 TCGA-57-1993 
       35.05        14.17        16.14        11.38        22.32        25.05 
TCGA-59-2348 TCGA-59-2351 TCGA-59-2352 TCGA-59-2372 TCGA-61-1730 TCGA-61-1907 
      180.16       116.12         9.40        44.78         4.34        31.30 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2088 TCGA-61-2097 TCGA-61-2612 TCGA-61-2614 
       39.85        30.64         4.77        60.62         6.35         8.58 

$`12Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1343 TCGA-04-1348 
       40.24         1.81        49.15        46.62        11.87        48.76 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1364 
       21.57        63.98        65.46        49.28        32.52        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 
       76.54        71.47        82.36        56.55        41.59        19.99 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 
      119.08        29.06        84.20        55.40        48.89        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1654 TCGA-09-0364 TCGA-09-1659 TCGA-09-1661 
       64.64        36.23        47.70        29.16         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1669 
       89.33        74.89        41.59        57.57        61.87        30.48 
TCGA-09-1670 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
       17.98         3.02         8.55        97.55         6.15         6.12 
TCGA-09-2045 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 
       35.15        71.11        63.09        39.75        20.91        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0928 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       12.46        54.31        18.48        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 TCGA-13-0724 
       35.41        15.12        19.86         6.21        44.55         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       12.39        31.07        55.17         2.47        11.18        11.38 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.54        34.06        32.25        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 
       38.93        36.72        28.70        30.35         8.71         7.79 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.28         8.19        43.82        35.28        13.61        68.91 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
       91.40        74.27        66.64        61.81        67.99        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 
       43.36        57.47        56.15        57.07        19.36        47.38 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       48.33        47.84        44.94        44.84        37.08        27.68 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 
       29.98        21.14        14.89         4.64         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
       10.88         6.61         7.36         5.92         6.84         4.70 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.21         5.33        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 
       98.04        22.39        70.82        82.88        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       38.17        49.22        54.31        37.61        38.37        13.97 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 
       32.84        16.57         4.21         4.77         4.14         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
        3.88         3.09        12.23        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 
       23.05        25.94        26.20        72.20        27.48        25.38 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 
       19.07        16.67         2.66        42.51        40.54        15.39 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       26.83        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 TCGA-23-1117 
        2.24        51.35        54.51        31.20        68.68        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 
       86.01       129.96         4.27         6.38        39.09        33.47 
TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
       58.13        24.95       115.89        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
       49.84         2.76         4.50         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 
       21.80        41.56         7.66        22.32        54.08        63.55 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1422 TCGA-24-1423 
       47.41         6.31         6.38         7.82         0.76         6.25 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 
        5.95         5.36         4.80        17.36        28.34        19.17 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1467 TCGA-24-1470 
       18.67        43.53         8.55        72.92       105.99         3.42 
TCGA-24-1471 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
        1.18        57.37        64.27        56.58        41.06        51.91 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1562 
       41.39        58.09        88.50        70.62        39.88        45.50 
TCGA-24-1564 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1842 
       25.87        17.23        90.15        88.34        48.33         8.32 
TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1920 
        3.48         3.72         4.37        11.28         5.75         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-2023 TCGA-24-2024 
       22.65        30.21        16.41        11.05        44.84        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 
       34.82       109.68        14.43        53.95        28.18        64.01 
TCGA-24-2254 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 
       57.07         0.79         0.36        47.54        31.63        70.45 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 
       67.36        36.23        16.64        55.86        53.26        26.93 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 
       31.99        51.06        37.02         1.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 
       36.95         2.99        12.00         2.96        18.58        18.02 
TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 
       15.78         0.36        20.58         7.86         0.30        56.94 
TCGA-25-1633 TCGA-25-1635 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       60.59        51.22        18.05        85.05        13.02        49.05 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 
       38.04         3.02        12.00        19.99        42.02         2.96 
TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1691 TCGA-29-1693 
       29.00        30.97        26.96        78.87        47.18       101.75 
TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 
       38.53        33.70        31.17        68.28         0.53        16.90 
TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 
       18.64        59.67        18.25        41.95        29.23        34.62 
TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 
       85.68        62.93        39.09        22.98        24.36        22.52 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 
       12.36        11.84        12.30         8.35         5.36        34.62 
TCGA-29-2427 TCGA-29-2429 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 
       62.47         4.87        11.84        11.47         9.76        38.07 
TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1857 TCGA-30-1860 TCGA-30-1861 
       51.91        36.26         2.47         0.26        44.91        34.78 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
        6.08        36.62        57.57        24.26        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 
       45.57        30.18        22.45         6.71        42.51        44.09 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1574 TCGA-36-1576 TCGA-36-1577 
       28.73        29.06        21.53        22.55        30.05        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       27.85        24.23        24.69        33.01        29.49        29.79 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       25.91        25.08        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2549 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 
       18.31        20.52         6.05        11.47        14.30         9.07 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 
        9.44         7.56         7.46         7.63         1.48        24.03 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1992 TCGA-57-1994 TCGA-59-2349 TCGA-59-2350 
       21.14         1.74        28.96        25.02        80.12        22.32 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
       34.39         2.14         5.39        11.11         8.05        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 
       31.40        18.54        27.88        31.76        28.47        48.79 
TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 
       44.84        35.80         2.43        33.67        43.69         1.41 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
        8.42         5.79        11.41        13.02         9.07        34.13 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 
       37.02        42.48        48.92        56.58        67.73        43.43 
TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 
       15.75        38.17         1.97         5.52        14.50        17.98 
TCGA-61-2003 TCGA-61-2008 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
        3.98        30.61         1.18        45.96        45.40         4.80 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 
       51.72        71.74        61.64        58.39        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 
        6.48        76.83        20.68        44.52       125.72        22.22 
TCGA-61-2613 
       31.07 

      12Q GAIN CNV 12Q GAIN WILD-TYPE 
              0.53               0.26 
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
            180.16             129.96 
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
            22.255             29.060 
[1] "0.5 - 180.2 (22.3)" "0.3 - 130.0 (29.1)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
      "12Q GAIN CNV"       "12Q GAIN CNV"       "12Q GAIN CNV" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV"       "12Q GAIN CNV" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV"       "12Q GAIN CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV"       "12Q GAIN CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "12Q GAIN CNV"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV"       "12Q GAIN CNV" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "12Q GAIN CNV"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV"       "12Q GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV"       "12Q GAIN CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-61-2614 
      "12Q GAIN CNV" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
      "12Q GAIN CNV"       "12Q GAIN CNV"       "12Q GAIN CNV" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV"       "12Q GAIN CNV" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV"       "12Q GAIN CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV"       "12Q GAIN CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "12Q GAIN CNV"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV"       "12Q GAIN CNV" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "12Q GAIN CNV"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV"       "12Q GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV"       "12Q GAIN CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-61-2614 
      "12Q GAIN CNV" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
      "12Q GAIN CNV"       "12Q GAIN CNV"       "12Q GAIN CNV" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV"       "12Q GAIN CNV" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV"       "12Q GAIN CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV"       "12Q GAIN CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "12Q GAIN CNV"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV"       "12Q GAIN CNV" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "12Q GAIN CNV"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV"       "12Q GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV"       "12Q GAIN CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-61-2614 
      "12Q GAIN CNV" 
[1] "hr=" "1.3"
D24V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  12Q GAIN CNV             0   116                1
  12Q GAIN WILD-TYPE       2   432                1
D24V3, multiclass
                  clus
vv                 12Q GAIN CNV 12Q GAIN WILD-TYPE
  OMENTUM                     0                  2
  OVARY                     116                432
  PERITONEUM OVARY            1                  1
D24V4, continuous
                    vv
clus                 I+II III  IV
  12Q GAIN CNV          0  24   6
  12Q GAIN WILD-TYPE    4 109  28
D24V5, multiclass
      clus
vv     12Q GAIN CNV 12Q GAIN WILD-TYPE
  I+II            0                  4
  III            24                109
  IV              6                 28
D24V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN CNV          1  121
  12Q GAIN WILD-TYPE    2  438
     clus
vv    12Q GAIN CNV 12Q GAIN WILD-TYPE
  NO             1                  2
  YES          121                438
                    vv
clus                 R0 R1 R2
  12Q GAIN CNV        3  9  0
  12Q GAIN WILD-TYPE 11 17  2
D24V7, multiclass
    clus
vv   12Q GAIN CNV 12Q GAIN WILD-TYPE
  R0            3                 11
  R1            9                 17
  R2            0                  2

Clustering(25) Variable = 13q gain
D25V1, survival
                    sevent
clus2                  0   1
  13Q GAIN CNV        19  20
  13Q GAIN WILD-TYPE 244 264
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                39                508 
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                20                264 
$`13Q GAIN CNV`
TCGA-04-1337 TCGA-04-1351 TCGA-04-1371 TCGA-09-0364 TCGA-09-2049 TCGA-10-0933 
        2.01        65.46        82.36        29.16       112.37        11.70 
TCGA-10-0935 TCGA-13-0727 TCGA-13-0802 TCGA-13-0899 TCGA-13-0921 TCGA-13-1407 
       35.41        15.19         8.19        56.15         4.64         6.05 
TCGA-23-1109 TCGA-23-2072 TCGA-24-0970 TCGA-24-1418 TCGA-24-1422 TCGA-24-1467 
       51.35        24.95        11.64         7.99         0.76       105.99 
TCGA-24-1930 TCGA-25-1312 TCGA-25-1320 TCGA-25-1323 TCGA-25-1870 TCGA-29-1695 
       81.11         1.02        36.95        12.00        14.93         0.79 
TCGA-29-1783 TCGA-29-2425 TCGA-29-2428 TCGA-30-1714 TCGA-30-1718 TCGA-30-1880 
        7.20        65.00        45.11        38.07        51.91        57.57 
TCGA-36-1576 TCGA-42-2591 TCGA-57-1993 TCGA-61-1911 TCGA-61-2003 TCGA-61-2008 
       30.05         7.63        25.05        42.48         3.98        30.61 
TCGA-61-2009 TCGA-61-2098 TCGA-61-2102 
       39.85        65.49         6.48 

$`13Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00         1.81        49.15        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       11.87        65.49        63.06        48.76        21.57        63.98 
TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       49.28        32.52        44.32        33.67        76.54        71.47 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 
       56.55        41.59        19.99        38.37       119.08        29.06 
TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 
       84.20        55.40        48.89        27.88        28.64        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0365 TCGA-09-0366 
       36.23        31.86        47.70        45.34         9.47        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
       17.95        35.54         9.96        38.43        89.33        74.89 
TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 
       41.59        57.57        61.87        55.36        30.48        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
        5.85         3.02         8.55        97.55         6.15         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 
       35.15         4.50        71.11        63.09        39.75        20.91 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 
       26.93        12.46        54.31        25.91        81.47        18.48 
TCGA-10-0930 TCGA-10-0931 TCGA-10-0934 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 
       33.24        32.28         3.88        35.80        15.12        19.86 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
        6.21        24.59        44.55        39.58         2.73        12.39 
TCGA-13-0726 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       31.07        17.79        55.17         2.47        11.18        11.38 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.54        34.06        32.25        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 
       38.93        36.72        28.70        30.35        19.56         8.71 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        7.79         8.12         8.28        43.82        35.28        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       13.61        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 
       70.39        61.81        67.99        69.01        43.36        57.47 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 
       57.07        19.36        47.38        48.33        47.84        44.94 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       44.84        37.08        27.68        34.06        29.98        21.14 
TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 
       14.89        13.81         6.41         6.08        10.88         6.61 
TCGA-13-1405 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 
        7.36         5.92         6.84         4.70         4.21         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
       54.61        87.06        61.71        29.39        98.04        20.68 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 
       22.39        70.82        82.88        52.44        73.55        38.17 
TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       49.22         4.24        54.31        37.61        38.37        13.97 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       32.84        16.57         4.21         4.41         4.77         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 
        2.56         3.88         3.09        14.24        12.23         8.58 
TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
       10.78         8.75         6.28        23.05        25.94        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 
       72.20        27.48        25.38        19.07        16.67         2.93 
TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 
        2.66        47.54        42.51        40.54        15.39        26.83 
TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       31.73        49.41         8.81        29.10        18.87         2.24 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 
       54.51         3.22        31.20        68.68         4.57        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 
       86.01       129.96         4.27         6.38        39.09        33.47 
TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
       58.13         0.53       115.89        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
       49.84         2.76         4.70         4.50         7.63        19.63 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 
       21.80        41.56         7.66        22.32        54.08        63.55 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1419 TCGA-24-1423 
       47.41         6.31         6.38         7.82         7.86         6.25 
TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 
        6.02         5.95         5.36         4.80        17.36        28.34 
TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 
       19.17        18.67        43.53         8.55        72.92        12.46 
TCGA-24-1466 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 
       45.14         9.11         3.42         1.18        22.19        26.96 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       57.37        64.27        16.21        56.58        41.06        51.91 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 
       41.39        58.09        88.50        70.62        39.88        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       90.15        88.34        48.33        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
        3.72         3.81         4.37        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-2019 
        9.80        22.65        30.21        16.41        11.05         4.87 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 
      151.99        44.84        58.16        34.82       109.68        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
       53.95        18.48        28.18        64.01        44.48        57.07 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 
       36.16         0.79         0.36        47.54        31.63        70.45 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 
       44.58         0.82        67.36        36.23        16.64        33.11 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       55.86        53.26        26.93        31.99        51.06        37.02 
TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 TCGA-25-1322 TCGA-25-1329 
        1.02        34.98        65.00        33.96         2.99         2.96 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 
       18.58        18.02        15.78         0.36        20.58         7.86 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1871 
        0.30        56.94        60.59        35.54        51.22        24.99 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 
       18.05        85.05        13.02        49.05         1.02        38.04 
TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 
        3.02        12.00        45.01        19.99        42.02         2.96 
TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 
       29.00        30.97        26.96        78.87        44.71        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 
      101.75        38.53        33.70        31.17        68.28         0.53 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       16.90        18.64        59.67        18.25        41.95        29.23 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 
       34.62        17.00        85.68        66.77        62.93        39.09 
TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 
       31.23        22.98        24.36        22.52        17.29        12.36 
TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 
       11.84        12.30        14.93         8.35         5.36        34.62 
TCGA-29-2414 TCGA-29-2427 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 
       86.17        62.47         4.87        42.25        11.84        11.47 
TCGA-29-2436 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 
        9.76        36.26         2.47        15.68         0.26        48.07 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1887 
       44.91        34.78         6.08        36.62         1.18        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 
        6.71        42.51        44.09         2.17        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1577 TCGA-36-1578 
       21.53        22.85        22.55         8.55        25.74        27.85 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       24.23        24.69        35.05        33.01        29.49        29.79 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       25.91        25.08        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 
       18.31        20.52        14.17         6.05        16.14        11.47 
TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2593 
       14.30         9.07         9.44         7.56         7.46         1.48 
TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 
       24.03        11.38        21.14         1.74        22.32        28.96 
TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 
       25.02       180.16        80.12        22.32       116.12         9.40 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 
       34.39         2.14         5.39        44.78        11.11         8.05 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 
       20.94        31.40        18.54        27.88         4.34        31.76 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       28.47        48.79        44.84        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
       43.69         1.41         8.42         5.79        11.41        13.02 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1913 TCGA-61-1914 
        9.07        34.13        31.30        37.02        48.92        56.58 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       67.73        43.43        15.75        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 
       14.50        17.98        30.64         1.18        45.96        45.40 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
        4.80         4.77        51.72        71.74        61.64        58.39 
TCGA-61-2097 TCGA-61-2101 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
       60.62        55.50        76.83        20.68        44.52       125.72 
TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       22.22         6.35        31.07         8.58 

      13Q GAIN CNV 13Q GAIN WILD-TYPE 
              0.76               0.26 
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
            112.37             180.16 
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
             29.16              28.03 
[1] "0.8 - 112.4 (29.2)" "0.3 - 180.2 (28.0)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV"       "13Q GAIN CNV" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "13Q GAIN CNV"       "13Q GAIN CNV"       "13Q GAIN CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2614 
"13Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
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        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
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        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
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        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
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        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
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        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
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        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
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        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
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        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
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        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
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        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
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        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
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        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
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        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
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        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
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        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
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        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
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        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
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        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
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        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
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        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
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        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
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        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "13Q GAIN CNV"       "13Q GAIN CNV"       "13Q GAIN CNV" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" 
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        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
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        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
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        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
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        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
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        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
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      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
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      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
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        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV"       "13Q GAIN CNV" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "13Q GAIN CNV"       "13Q GAIN CNV"       "13Q GAIN CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2614 
"13Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D25V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  13Q GAIN CNV             0    39                0
  13Q GAIN WILD-TYPE       2   509                2
D25V3, multiclass
                  clus
vv                 13Q GAIN CNV 13Q GAIN WILD-TYPE
  OMENTUM                     0                  2
  OVARY                      39                509
  PERITONEUM OVARY            0                  2
D25V4, continuous
                    vv
clus                 I+II III  IV
  13Q GAIN CNV          0  14   0
  13Q GAIN WILD-TYPE    4 119  34
D25V5, multiclass
      clus
vv     13Q GAIN CNV 13Q GAIN WILD-TYPE
  I+II            0                  4
  III            14                119
  IV              0                 34
D25V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN CNV          1   40
  13Q GAIN WILD-TYPE    2  519
     clus
vv    13Q GAIN CNV 13Q GAIN WILD-TYPE
  NO             1                  2
  YES           40                519
                    vv
clus                 R0 R1 R2
  13Q GAIN CNV        1  2  0
  13Q GAIN WILD-TYPE 13 24  2
D25V7, multiclass
    clus
vv   13Q GAIN CNV 13Q GAIN WILD-TYPE
  R0            1                 13
  R1            2                 24
  R2            0                  2

Clustering(26) Variable = 14q gain
D26V1, survival
                    sevent
clus2                  0   1
  14Q GAIN CNV        16  17
  14Q GAIN WILD-TYPE 247 267
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                33                514 
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                17                267 
$`14Q GAIN CNV`
TCGA-04-1514 TCGA-04-1646 TCGA-09-0364 TCGA-09-1669 TCGA-13-0762 TCGA-13-0768 
       56.55        27.88        29.16        30.48        32.25         8.42 
TCGA-13-0899 TCGA-13-0901 TCGA-13-2057 TCGA-13-2059 TCGA-23-1809 TCGA-24-1103 
       56.15        19.36        14.24        12.23         0.53        54.08 
TCGA-24-1545 TCGA-24-1555 TCGA-24-1842 TCGA-24-1844 TCGA-24-2030 TCGA-24-2261 
       57.37        88.50         8.32         3.72        53.95         0.79 
TCGA-25-1314 TCGA-25-1317 TCGA-25-2408 TCGA-29-1702 TCGA-29-2428 TCGA-30-1714 
       31.99         1.02        30.97        18.64        45.11        38.07 
TCGA-31-1959 TCGA-36-1570 TCGA-36-2544 TCGA-36-2548 TCGA-57-1583 TCGA-59-2352 
        2.17        21.53        20.98        14.17        11.38         9.40 
TCGA-61-1730 TCGA-61-2097 TCGA-61-2612 
        4.34        60.62         6.35 

$`14Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       63.98        65.46        49.28        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 
       76.54        71.47        82.36        41.59        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 
      119.08        29.06        84.20        55.40        48.89        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0365 
       64.64        36.23        31.86        47.70        45.34         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       57.73        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1670 
       74.89        41.59        57.57        61.87        55.36        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
        5.85         3.02         8.55        97.55         6.15         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 
       35.15         4.50       112.37        71.11        63.09        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       20.91        26.93        12.46        54.31        25.91        81.47 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 
       18.48        33.24        32.28        11.70         3.88        35.41 
TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 
       35.80        15.12        19.86         6.21        24.59        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       39.58         2.73        12.39        31.07        15.19        17.79 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       55.17         2.47        11.18        11.38        11.54        34.06 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 
       31.04        21.40        38.93        36.72        28.70        30.35 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 
       19.56         8.71         7.79         8.12         8.28         8.19 
TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 
       43.82        35.28        35.28        13.61        68.91       107.18 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 
       91.40        74.27        66.64        70.39        61.81        67.99 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 TCGA-13-0903 TCGA-13-0904 
       69.01        43.36        57.47        57.07        47.38        48.33 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       47.84        44.94        44.84        37.08        27.68        34.06 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 
       29.98        21.14        14.89        13.81         4.64         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 
        6.08        10.88         6.61         7.36         6.05         5.92 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        6.84         4.70         4.21         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
       61.71        29.39        98.04        20.68        22.39        70.82 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 
       82.88        52.44        73.55        38.17        49.22         4.24 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
       54.31        37.61        38.37        13.97        32.84        16.57 
TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
        4.21         4.41         4.77         4.14         2.56         3.88 
TCGA-13-1512 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 
        3.09         8.58        10.78         8.75         6.28        23.05 
TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 
       25.94        26.20        72.20        27.48        25.38        19.07 
TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 
       16.67         2.93         2.66        47.54        42.51        40.54 
TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 
       15.39        26.83        31.73        49.41         8.81        29.10 
TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 
       18.87         2.24        51.35        54.51         3.22        31.20 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       68.68         4.57        33.30        86.01       129.96         4.27 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 
        6.38        39.09        33.47        58.13        24.95       115.89 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 
       87.48        91.66        77.00        49.84         2.76         4.70 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 
        4.50         7.63        19.63        11.64        21.80        41.56 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
        7.66        22.32        63.55        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 
        7.82         7.99         7.86         0.76         6.25         6.02 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 
        5.95         5.36         4.80        17.36        28.34        19.17 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 
       18.67        43.53         8.55        72.92        12.46        45.14 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 
      105.99         9.11         3.42         1.18        22.19        26.96 
TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
       64.27        16.21        56.58        41.06        51.91        41.39 
TCGA-24-1553 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       58.09        70.62        39.88        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
       47.70        25.87        10.26        17.23        90.15        88.34 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 
       48.33        38.24         3.48         3.81         4.37        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
        5.75         5.49         9.80        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       11.05        81.11         4.87       151.99        44.84        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 
       34.82       109.68        14.43        18.48        28.18        64.01 
TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       44.48        57.07        36.16         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       70.45        44.58         0.82        67.36        36.23        16.64 
TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1315 
       33.11        55.86        53.26         1.02        26.93        51.06 
TCGA-25-1316 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 
       37.02        34.98        65.00        36.95        33.96         2.99 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 
       12.00         2.96        18.58        18.02        15.78         0.36 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 
       20.58         7.86         0.30        56.94        60.59        35.54 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
       51.22        14.93        24.99        18.05        85.05        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
       49.05         1.02        38.04         3.02        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2409 TCGA-29-1688 
       19.99        42.02         2.96        29.00        26.96        78.87 
TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 
       44.71        47.18       101.75        38.53         0.79        33.70 
TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1703 TCGA-29-1705 
       31.17        68.28         0.53        16.90        59.67        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 
       41.95        29.23        34.62        17.00        85.68        66.77 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 
       62.93        39.09        31.23        22.98        24.36        22.52 
TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 
       17.29        12.36        11.84        12.30        14.93         8.35 
TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 
        7.20         5.36        34.62        86.17        65.00        62.47 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1718 
        4.87        42.25        11.84        11.47         9.76        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 
       36.26         2.47        15.68         0.26        48.07        44.91 
TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       34.78         6.08        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 TCGA-36-1571 
        6.71        42.51        44.09        28.73        29.06        22.85 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
       22.55         8.55        30.05        25.74        27.85        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       24.69        35.05        33.01        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2545 TCGA-36-2547 
       25.08        23.80        21.60         2.24        18.31        20.52 
TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 
        6.05        16.14        11.47        14.30         9.07         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1584 
        7.56         7.46         7.63         1.48        24.03        21.14 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 
        1.74        22.32        28.96        25.05        25.02       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       80.12        22.32       116.12        34.39         2.14         5.39 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 
       44.78        11.11         8.05        20.94        31.40        18.54 
TCGA-61-1728 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
       27.88        31.76        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 
        2.43        33.67        43.69         1.41         8.42         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
       11.41        13.02         9.07        34.13        31.30        37.02 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
       42.48        48.92        56.58        67.73        43.43        15.75 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
       38.17         1.97         5.52        14.50        17.98         3.98 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 
       30.61        39.85        30.64         1.18        45.96        45.40 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
        4.80         4.77        51.72        71.74        61.64        58.39 
TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       65.49        55.50         6.48        76.83        20.68        44.52 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2613 TCGA-61-2614 
      125.72        22.22        31.07         8.58 

      14Q GAIN CNV 14Q GAIN WILD-TYPE 
              0.53               0.26 
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
             88.50             180.16 
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
            20.980             28.555 
[1] "0.5 - 88.5 (21.0)"  "0.3 - 180.2 (28.6)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "14Q GAIN CNV"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
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        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
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        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
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        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
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        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
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        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
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        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
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        TCGA-61-2614 
"14Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
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        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
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        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
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        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
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      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
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        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
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        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
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        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
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        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
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        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
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        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
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      "14Q GAIN CNV" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
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        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
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      "14Q GAIN CNV"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
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        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
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        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
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        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
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        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
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        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
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        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
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        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
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        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
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        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
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        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
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        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
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        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
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        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
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      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-61-2614 
"14Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "14Q GAIN CNV"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-61-2614 
"14Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D26V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  14Q GAIN CNV             0    33                0
  14Q GAIN WILD-TYPE       2   515                2
D26V3, multiclass
                  clus
vv                 14Q GAIN CNV 14Q GAIN WILD-TYPE
  OMENTUM                     0                  2
  OVARY                      33                515
  PERITONEUM OVARY            0                  2
D26V4, continuous
                    vv
clus                 I+II III  IV
  14Q GAIN CNV          0   2   1
  14Q GAIN WILD-TYPE    4 131  33
D26V5, multiclass
      clus
vv     14Q GAIN CNV 14Q GAIN WILD-TYPE
  I+II            0                  4
  III             2                131
  IV              1                 33
D26V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN CNV          1   32
  14Q GAIN WILD-TYPE    2  527
     clus
vv    14Q GAIN CNV 14Q GAIN WILD-TYPE
  NO             1                  2
  YES           32                527
                    vv
clus                 R0 R1 R2
  14Q GAIN CNV        0  4  0
  14Q GAIN WILD-TYPE 14 22  2
D26V7, multiclass
    clus
vv   14Q GAIN CNV 14Q GAIN WILD-TYPE
  R0            0                 14
  R1            4                 22
  R2            0                  2

Clustering(27) Variable = 15q gain
D27V1, survival
                    sevent
clus2                  0   1
  15Q GAIN CNV        11  12
  15Q GAIN WILD-TYPE 252 272
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                23                524 
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                12                272 
$`15Q GAIN CNV`
TCGA-04-1349 TCGA-04-1356 TCGA-04-1361 TCGA-10-0938 TCGA-13-0761 TCGA-13-0792 
       21.57        49.28        32.52        19.86        34.06        36.72 
TCGA-13-2065 TCGA-23-1021 TCGA-23-2072 TCGA-23-2079 TCGA-24-1551 TCGA-24-1558 
        8.75        47.54        24.95        91.66        51.91        19.53 
TCGA-24-2289 TCGA-25-1627 TCGA-36-1571 TCGA-36-2542 TCGA-42-2587 TCGA-57-1582 
       67.36         0.36        22.85        21.60         9.07        24.03 
TCGA-61-1730 TCGA-61-1907 TCGA-61-1915 TCGA-61-2009 TCGA-61-2097 
        4.34        31.30        67.73        39.85        60.62 

$`15Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1350 
       18.51        11.87        65.49        63.06        48.76        63.98 
TCGA-04-1351 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 
       65.46        44.32        33.67        76.54        71.47        82.36 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 
       56.55        41.59        19.99        38.37       119.08        29.06 
TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 
       84.20        55.40        48.89        27.88        28.64        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       36.23        31.86        47.70        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       57.73        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       74.89        41.59        57.57        61.87        55.36        30.48 
TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 
       17.98         5.85         3.02         8.55        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
        6.12        35.15         4.50       112.37        71.11        63.09 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       39.75        20.91        26.93        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       81.47        18.48        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 
       35.41        35.80        15.12         6.21        24.59        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       39.58         2.73        12.39        31.07        15.19        17.79 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0762 
       55.17         2.47        11.18        11.38        11.54        32.25 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 
       31.04        21.40         8.42        38.93        28.70        30.35 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 
       19.56         8.71         7.79         8.12         8.28         8.19 
TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 
       43.82        35.28        35.28        13.61        68.91       107.18 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 
       91.40        74.27        66.64        70.39        61.81        67.99 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       69.01        43.36        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       47.38        48.33        47.84        44.94        44.84        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 
       27.68        34.06        29.98        21.14        14.89        13.81 
TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 
        4.64         6.41         6.08        10.88         6.61         7.36 
TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 
        6.05         5.92         6.84         4.70         4.21         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
       54.61        87.06        61.71        29.39        98.04        20.68 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 
       22.39        70.82        82.88        52.44        73.55        38.17 
TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       49.22         4.24        54.31        37.61        38.37        13.97 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       32.84        16.57         4.21         4.41         4.77         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 
        2.56         3.88         3.09        14.24        12.23         8.58 
TCGA-13-2061 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
       10.78         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       27.48        25.38        19.07        16.67         2.93         2.66 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       42.51        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
        3.22        31.20        68.68         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
      129.96         4.27         6.38        39.09        33.47        58.13 
TCGA-23-1809 TCGA-23-2077 TCGA-23-2078 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
        0.53       115.89        87.48        77.00        49.84         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        4.70         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       41.56         7.66        22.32        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 
        6.31         6.38         7.82         7.99         7.86         0.76 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        6.25         6.02         5.95         5.36         4.80        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 
       28.34        19.17        18.67        43.53         8.55        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 
       12.46        45.14       105.99         9.11         3.42         1.18 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
       22.19        26.96        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       41.06        41.39        58.09        88.50        70.62        39.88 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       90.15        88.34        48.33        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
        3.72         3.81         4.37        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        9.80        22.65        30.21        16.41        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 
        4.87       151.99        44.84        58.16        34.82       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
       14.43        53.95        18.48        28.18        64.01        44.48 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       57.07        36.16         0.79         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 
       70.45        44.58         0.82        36.23        16.64        33.11 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       55.86        53.26         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       37.02         1.02        34.98        65.00        36.95        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
        2.99        12.00         2.96        18.58        18.02        15.78 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 
       20.58         7.86         0.30        56.94        60.59        35.54 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
       51.22        14.93        24.99        18.05        85.05        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
       49.05         1.02        38.04         3.02        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       19.99        42.02         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       78.87        44.71        47.18       101.75        38.53         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
       33.70        31.17        68.28         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       59.67        18.25        41.95        29.23        34.62        17.00 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       85.68        66.77        62.93        39.09        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 
       24.36        22.52        17.29        12.36        11.84        12.30 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 
       14.93         8.35         7.20         5.36        34.62        86.17 
TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
       65.00        62.47        45.11         4.87        42.25        11.84 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 
       11.47         9.76        38.07        51.91        36.26         2.47 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 
       15.68         0.26        48.07        44.91        34.78         6.08 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
       36.62         1.18        57.57        24.26        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       45.57        30.18        18.77        22.45         6.71        42.51 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1574 
       44.09         2.17        28.73        29.06        21.53        22.55 
TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 
        8.55        30.05        25.74        27.85        24.23        24.69 
TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       35.05        33.01        29.49        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 
       23.80         2.24        20.98        18.31        20.52        14.17 
TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 
        6.05        16.14        11.47        14.30         9.44         7.56 
TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 
        7.46         7.63         1.48        11.38        21.14         1.74 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       22.32        28.96        25.05        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       22.32       116.12         9.40        34.39         2.14         5.39 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 
       44.78        11.11         8.05        20.94        31.40        18.54 
TCGA-61-1728 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
       27.88        31.76        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 
        2.43        33.67        43.69         1.41         8.42         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 TCGA-61-1911 
       11.41        13.02         9.07        34.13        37.02        42.48 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       48.92        56.58        43.43        15.75        38.17         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2012 
        5.52        14.50        17.98         3.98        30.61        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
        1.18        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       71.74        61.64        58.39        65.49        55.50         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 
       76.83        20.68        44.52       125.72        22.22         6.35 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

      15Q GAIN CNV 15Q GAIN WILD-TYPE 
              0.36               0.26 
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
             91.66             180.16 
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
             31.30              28.03 
[1] "0.4 - 91.7 (31.3)"  "0.3 - 180.2 (28.0)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"       "15Q GAIN CNV" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"       "15Q GAIN CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
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        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
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      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"       "15Q GAIN CNV" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"       "15Q GAIN CNV" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"       "15Q GAIN CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
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        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
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        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
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        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
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        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
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        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
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        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
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        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"       "15Q GAIN CNV" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"       "15Q GAIN CNV" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"       "15Q GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"       "15Q GAIN CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2614 
"15Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D27V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  15Q GAIN CNV             0    24                0
  15Q GAIN WILD-TYPE       2   524                2
D27V3, multiclass
                  clus
vv                 15Q GAIN CNV 15Q GAIN WILD-TYPE
  OMENTUM                     0                  2
  OVARY                      24                524
  PERITONEUM OVARY            0                  2
D27V4, continuous
[1] "Remove cluster labels:" "15Q GAIN CNV"          
clus
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                 2                 74 
        TCGA-04-1346         TCGA-04-1347         TCGA-04-1351 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1367         TCGA-10-0925         TCGA-10-0926 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0714         TCGA-13-0720         TCGA-13-0724 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0755         TCGA-13-0757         TCGA-13-0758 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0760         TCGA-13-0762         TCGA-13-0764 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0768         TCGA-13-0791         TCGA-13-0793 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0794         TCGA-13-0795         TCGA-13-0797 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0799         TCGA-13-0801         TCGA-13-0802 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0887         TCGA-13-0888 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0889         TCGA-13-0891         TCGA-13-0897 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0900         TCGA-13-0901         TCGA-13-0903 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0904         TCGA-13-0905         TCGA-13-0906 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0910         TCGA-13-0911         TCGA-13-0912 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0913         TCGA-13-0919         TCGA-13-1404 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1405         TCGA-13-1409         TCGA-13-1410 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1412         TCGA-13-1482         TCGA-13-1483 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1484         TCGA-13-1485         TCGA-13-1488 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1489         TCGA-13-1491         TCGA-13-1492 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1497         TCGA-13-1498 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1499         TCGA-13-1500         TCGA-13-1501 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1504         TCGA-13-1506         TCGA-13-1507 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1509         TCGA-13-1511         TCGA-13-1512 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2071         TCGA-24-1614 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1930         TCGA-61-2101 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
                    vv
clus                 I+II III  IV
  15Q GAIN CNV          0   1   1
  15Q GAIN WILD-TYPE    4 132  33
D27V5, multiclass
[1] "Remove cluster labels:" "15Q GAIN CNV"          
clus
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                 2                169 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1654         TCGA-10-0925 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-10-0926         TCGA-10-0927         TCGA-10-0928 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-10-0930         TCGA-10-0931         TCGA-10-0933 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-10-0934         TCGA-10-0935         TCGA-10-0936 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-10-0937         TCGA-13-0807         TCGA-13-0883 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0897         TCGA-13-0899 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0906 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0910         TCGA-13-0911         TCGA-13-0912 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0913         TCGA-13-0916         TCGA-13-0919 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0920         TCGA-13-0921         TCGA-13-0923 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0924         TCGA-13-1477         TCGA-13-1481 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1482         TCGA-13-1483         TCGA-13-1484 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1485         TCGA-13-1487         TCGA-13-1488 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1489         TCGA-13-1491         TCGA-13-1492 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1494         TCGA-13-1495         TCGA-13-1496 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1497         TCGA-13-1498         TCGA-13-1499 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1500         TCGA-13-1501         TCGA-13-1504 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1505         TCGA-13-1506         TCGA-13-1507 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1509         TCGA-13-1510         TCGA-13-1511 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1512         TCGA-20-0987         TCGA-20-0990 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-20-0991         TCGA-20-0996         TCGA-23-1022 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1030 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-1031         TCGA-23-1032         TCGA-23-1109 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-1110         TCGA-23-1113         TCGA-23-1116 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-24-0966 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-0968         TCGA-24-0970         TCGA-24-0975 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-0979         TCGA-24-0980         TCGA-24-0982 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1103         TCGA-24-1104         TCGA-24-1105 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1416         TCGA-24-1417         TCGA-24-1418 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1419         TCGA-24-1422         TCGA-24-1423 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1424         TCGA-24-1426         TCGA-24-1427 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1920         TCGA-24-1923 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1924         TCGA-24-1927         TCGA-24-1928 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1930         TCGA-24-2020         TCGA-24-2023 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2026         TCGA-24-2027         TCGA-24-2029 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-30-1853         TCGA-30-1860 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-57-1992         TCGA-57-1993 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1724         TCGA-61-1728 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1917         TCGA-61-1918 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1919 
"15Q GAIN WILD-TYPE" 
D27V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN CNV          0   25
  15Q GAIN WILD-TYPE    3  534
     clus
vv    15Q GAIN CNV 15Q GAIN WILD-TYPE
  NO             0                  3
  YES           25                534
                    vv
clus                 R0 R1 R2
  15Q GAIN CNV        0  2  0
  15Q GAIN WILD-TYPE 14 24  2
D27V7, multiclass
[1] "Remove cluster labels:" "15Q GAIN CNV"          
clus
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                 2                 40 
        TCGA-04-1516         TCGA-04-1644         TCGA-13-0807 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-24-2033         TCGA-29-2414 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-2425         TCGA-29-2427         TCGA-29-2428 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-2429         TCGA-29-2431         TCGA-29-2432 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-2434         TCGA-29-2436         TCGA-36-2529 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-2530         TCGA-36-2532         TCGA-36-2534 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-2537         TCGA-36-2538         TCGA-36-2540 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-2543         TCGA-36-2544         TCGA-36-2545 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-2547         TCGA-36-2548         TCGA-36-2549 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-2551         TCGA-36-2552         TCGA-42-2582 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-42-2593         TCGA-57-1993         TCGA-59-2363 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-2612         TCGA-61-2613 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2614 
"15Q GAIN WILD-TYPE" 

Clustering(28) Variable = 16p gain
D28V1, survival
                    sevent
clus2                  0   1
  16P GAIN CNV        16  15
  16P GAIN WILD-TYPE 247 269
      16P GAIN CNV 16P GAIN WILD-TYPE 
                31                516 
      16P GAIN CNV 16P GAIN WILD-TYPE 
                15                269 
$`16P GAIN CNV`
TCGA-04-1351 TCGA-04-1371 TCGA-04-1542 TCGA-04-1646 TCGA-04-1648 TCGA-04-1655 
       65.46        82.36        84.20        27.88        28.64        45.34 
TCGA-09-0364 TCGA-09-1672 TCGA-10-0936 TCGA-13-0724 TCGA-13-0889 TCGA-13-0901 
       29.16         5.85        35.80         2.73        61.81        19.36 
TCGA-13-2059 TCGA-23-1021 TCGA-23-1124 TCGA-23-1809 TCGA-24-1604 TCGA-24-1842 
       12.23        47.54        58.13         0.53        88.34         8.32 
TCGA-24-1845 TCGA-25-1871 TCGA-25-1877 TCGA-29-1774 TCGA-29-1784 TCGA-29-2432 
        3.81        24.99        18.05        17.29         5.36        11.84 
TCGA-31-1959 TCGA-36-2547 TCGA-36-2552 TCGA-59-2372 TCGA-61-1915 TCGA-61-2009 
        2.17        20.52        11.47        44.78        67.73        39.85 
TCGA-61-2101 
       55.50 

$`16P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       63.98        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       71.47        56.55        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 
       29.06        55.40        48.89        64.64        36.23        31.86 
TCGA-04-1654 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 
       47.70         9.47        57.73        17.95        35.54         9.96 
TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 
       38.43        89.33        74.89        41.59        57.57        61.87 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 
       55.36        30.48        17.98         3.02         8.55        97.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
        6.15         6.12        35.15         4.50       112.37        71.11 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       63.09        39.75        20.91        26.93        12.46        54.31 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 
       25.91        81.47        18.48        33.24        32.28        11.70 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
        3.88        35.41        15.12        19.86         6.21        24.59 
TCGA-13-0720 TCGA-13-0723 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       44.55        39.58        12.39        31.07        15.19        17.79 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       55.17         2.47        11.18        11.38        11.54        34.06 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       32.25        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       28.70        30.35        19.56         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.28         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 
       68.91       107.18        91.40        74.27        66.64        70.39 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       67.99        69.01        43.36        57.47        56.15        57.07 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       47.38        48.33        47.84        44.94        44.84        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 
       27.68        34.06        29.98        21.14        14.89        13.81 
TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 
        4.64         6.41         6.08        10.88         6.61         7.36 
TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 
        6.05         5.92         6.84         4.70         4.21         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
       54.61        87.06        61.71        29.39        98.04        20.68 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 
       22.39        70.82        82.88        52.44        73.55        38.17 
TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       49.22         4.24        54.31        37.61        38.37        13.97 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       32.84        16.57         4.21         4.41         4.77         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 
        2.56         3.88         3.09        14.24         8.58        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       27.48        25.38        19.07        16.67         2.93         2.66 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       42.51        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
        3.22        31.20        68.68         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 
      129.96         4.27         6.38        39.09        33.47        24.95 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
      115.89        87.48        91.66        77.00        49.84         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        4.70         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       41.56         7.66        22.32        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 
        6.31         6.38         7.82         7.99         7.86         0.76 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        6.25         6.02         5.95         5.36         4.80        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 
       28.34        19.17        18.67        43.53         8.55        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 
       12.46        45.14       105.99         9.11         3.42         1.18 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
       22.19        26.96        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 
       41.06        51.91        41.39        58.09        88.50        70.62 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 
       39.88        19.53        44.09        45.50        47.70        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 
       10.26        17.23        90.15        48.33        38.24         3.48 
TCGA-24-1844 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.72         4.37        11.28         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 
       22.65        30.21        16.41        11.05        81.11         4.87 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 
      151.99        44.84        58.16        34.82       109.68        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
       53.95        18.48        28.18        64.01        44.48        57.07 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 
       36.16         0.79         0.36        47.54        31.63        70.45 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 
       44.58         0.82        67.36        36.23        16.64        33.11 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       55.86        53.26         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       37.02         1.02        34.98        65.00        36.95        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
        2.99        12.00         2.96        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 
        0.36        20.58         7.86         0.30        56.94        60.59 
TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       35.54        51.22        14.93        85.05        13.02        49.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
        1.02        38.04         3.02        12.00        45.01        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 
       42.02         2.96        29.00        30.97        26.96        78.87 
TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 
       44.71        47.18       101.75        38.53         0.79        33.70 
TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 
       31.17        68.28         0.53        16.90        18.64        59.67 
TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 
       18.25        41.95        29.23        34.62        17.00        85.68 
TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 
       66.77        62.93        39.09        31.23        22.98        24.36 
TCGA-29-1771 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 
       22.52        12.36        11.84        12.30        14.93         8.35 
TCGA-29-1783 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 
        7.20        34.62        86.17        65.00        62.47        45.11 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
        4.87        42.25        11.47         9.76        38.07        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 
       36.26         2.47        15.68         0.26        48.07        44.91 
TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       34.78         6.08        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
        6.71        42.51        44.09        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       22.85        22.55         8.55        30.05        25.74        27.85 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       24.23        24.69        35.05        33.01        29.49        29.79 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       25.91        25.08        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-42-2582 TCGA-42-2587 
       18.31        14.17         6.05        16.14        14.30         9.07 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 
        9.44         7.56         7.46         7.63         1.48        24.03 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 
       11.38        21.14         1.74        22.32        28.96        25.05 
TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 
       25.02       180.16        80.12        22.32       116.12         9.40 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
       34.39         2.14         5.39        11.11         8.05        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 
       31.40        18.54        27.88         4.34        31.76        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 
       48.79        44.84        35.80         2.43        33.67        43.69 
TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
        1.41         8.42         5.79        11.41        13.02         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
       34.13        31.30        37.02        42.48        48.92        56.58 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       43.43        15.75        38.17         1.97         5.52        14.50 
TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 
       17.98         3.98        30.61        30.64         1.18        45.96 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.40         4.80         4.77        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 
       58.39        60.62        65.49         6.48        76.83        20.68 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       44.52       125.72        22.22         6.35        31.07         8.58 

      16P GAIN CNV 16P GAIN WILD-TYPE 
              0.53               0.26 
      16P GAIN CNV 16P GAIN WILD-TYPE 
             88.34             180.16 
      16P GAIN CNV 16P GAIN WILD-TYPE 
             27.88              28.26 
[1] "0.5 - 88.3 (27.9)"  "0.3 - 180.2 (28.3)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "16P GAIN CNV"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "16P GAIN CNV"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"16P GAIN WILD-TYPE"       "16P GAIN CNV"       "16P GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"16P GAIN WILD-TYPE"       "16P GAIN CNV"       "16P GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2614 
"16P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "16P GAIN CNV"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "16P GAIN CNV"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"16P GAIN WILD-TYPE"       "16P GAIN CNV"       "16P GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"16P GAIN WILD-TYPE"       "16P GAIN CNV"       "16P GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2614 
"16P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "16P GAIN CNV"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "16P GAIN CNV"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"16P GAIN WILD-TYPE"       "16P GAIN CNV"       "16P GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"16P GAIN WILD-TYPE"       "16P GAIN CNV"       "16P GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2614 
"16P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D28V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  16P GAIN CNV             0    31                0
  16P GAIN WILD-TYPE       2   517                2
D28V3, multiclass
                  clus
vv                 16P GAIN CNV 16P GAIN WILD-TYPE
  OMENTUM                     0                  2
  OVARY                      31                517
  PERITONEUM OVARY            0                  2
D28V4, continuous
                    vv
clus                 I+II III  IV
  16P GAIN CNV          0   4   3
  16P GAIN WILD-TYPE    4 129  31
D28V5, multiclass
      clus
vv     16P GAIN CNV 16P GAIN WILD-TYPE
  I+II            0                  4
  III             4                129
  IV              3                 31
D28V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN CNV          0   31
  16P GAIN WILD-TYPE    3  528
     clus
vv    16P GAIN CNV 16P GAIN WILD-TYPE
  NO             0                  3
  YES           31                528
                    vv
clus                 R0 R1 R2
  16P GAIN CNV        3  1  0
  16P GAIN WILD-TYPE 11 25  2
D28V7, multiclass
    clus
vv   16P GAIN CNV 16P GAIN WILD-TYPE
  R0            3                 11
  R1            1                 25
  R2            0                  2

Clustering(29) Variable = 16q gain
D29V1, survival
                    sevent
clus2                  0   1
  16Q GAIN CNV         8   7
  16Q GAIN WILD-TYPE 255 277
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                15                532 
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                 7                277 
$`16Q GAIN CNV`
TCGA-04-1542 TCGA-04-1646 TCGA-04-1648 TCGA-09-0364 TCGA-09-1672 TCGA-13-1510 
       84.20        27.88        28.64        29.16         5.85         2.56 
TCGA-13-2059 TCGA-23-1021 TCGA-24-1604 TCGA-24-1845 TCGA-29-1774 TCGA-36-2538 
       12.23        47.54        88.34         3.81        17.29        25.08 
TCGA-36-2547 TCGA-59-2372 TCGA-61-1915 
       20.52        44.78        67.73 

$`16Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       63.98        65.46        49.28        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 
       76.54        71.47        82.36        56.55        41.59        19.99 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1649 
       38.37       119.08        29.06        55.40        48.89        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0365 TCGA-09-0366 
       36.23        31.86        47.70        45.34         9.47        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
       17.95        35.54         9.96        38.43        89.33        74.89 
TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 
       41.59        57.57        61.87        55.36        30.48        17.98 
TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 
        3.02         8.55        97.55         6.15         6.12        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 
        4.50       112.37        71.11        63.09        39.75        20.91 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 
       26.93        12.46        54.31        25.91        81.47        18.48 
TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       33.24        32.28        11.70         3.88        35.41        35.80 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 
       15.12        19.86         6.21        24.59        44.55        39.58 
TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 
        2.73        12.39        31.07        15.19        17.79        55.17 
TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 
        2.47        11.18        11.38        11.54        34.06        32.25 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 
       31.04        21.40         8.42        38.93        36.72        28.70 
TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 
       30.35        19.56         8.71         7.79         8.12         8.28 
TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.19        43.82        35.28        35.28        13.61        68.91 
TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 
      107.18        91.40        74.27        66.64        70.39        61.81 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       67.99        69.01        43.36        57.47        56.15        57.07 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 
       19.36        47.38        48.33        47.84        44.94        44.84 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 
       37.08        27.68        34.06        29.98        21.14        14.89 
TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 
       13.81         4.64         6.41         6.08        10.88         6.61 
TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 
        7.36         6.05         5.92         6.84         4.70         4.21 
TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 
        5.33        54.61        87.06        61.71        29.39        98.04 
TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 
       20.68        22.39        70.82        82.88        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       38.17        49.22         4.24        54.31        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 
       13.97        32.84        16.57         4.21         4.41         4.77 
TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 
        4.14         3.88         3.09        14.24         8.58        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       27.48        25.38        19.07        16.67         2.93         2.66 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       42.51        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
        3.22        31.20        68.68         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
      129.96         4.27         6.38        39.09        33.47        58.13 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
        0.53        24.95       115.89        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
       49.84         2.76         4.70         4.50         7.63        19.63 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 
       11.64        21.80        41.56         7.66        22.32        54.08 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       63.55        47.41         6.31         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 
        7.86         0.76         6.25         6.02         5.95         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 
        4.80        17.36        28.34        19.17        18.67        43.53 
TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 
        8.55        72.92        12.46        45.14       105.99         9.11 
TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
        3.42         1.18        22.19        26.96        57.37        64.27 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 
       16.21        56.58        41.06        51.91        41.39        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       88.50        70.62        39.88        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 
       47.70        25.87        10.26        17.23        90.15        48.33 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 TCGA-24-1847 
       38.24         8.32         3.48         3.72         4.37        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
        5.75         5.49         9.80        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       11.05        81.11         4.87       151.99        44.84        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 
       34.82       109.68        14.43        53.95        18.48        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 
       64.01        44.48        57.07        36.16         0.79         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
       47.54        31.63        70.45        44.58         0.82        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 
       36.23        16.64        33.11        55.86        53.26         1.02 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 
       26.93        31.99        51.06        37.02         1.02        34.98 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 
       65.00        36.95        33.96         2.99        12.00         2.96 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 
       18.58        18.02        15.78         0.36        20.58         7.86 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 
        0.30        56.94        60.59        35.54        51.22        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       24.99        18.05        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
       38.04         3.02        12.00        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
        2.96        29.00        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 
       47.18       101.75        38.53         0.79        33.70        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 
       68.28         0.53        16.90        18.64        59.67        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 
       41.95        29.23        34.62        17.00        85.68        66.77 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 
       62.93        39.09        31.23        22.98        24.36        22.52 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 
       12.36        11.84        12.30        14.93         8.35         7.20 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 
        5.36        34.62        86.17        65.00        62.47        45.11 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 
        4.87        42.25        11.84        11.47         9.76        38.07 
TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 
       51.91        36.26         2.47        15.68         0.26        48.07 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 
       44.91        34.78         6.08        36.62         1.18        57.57 
TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 
       24.26        30.05        48.79        45.57        30.18        18.77 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 
       22.45         6.71        42.51        44.09         2.17        28.73 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 
       29.06        21.53        22.85        22.55         8.55        30.05 
TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 
       25.74        27.85        24.23        24.69        35.05        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.49        29.79        25.91        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 
       20.98        18.31        14.17         6.05        16.14        11.47 
TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
       14.30         9.07         9.44         7.56         7.46         7.63 
TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 
        1.48        24.03        11.38        21.14         1.74        22.32 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 
       28.96        25.05        25.02       180.16        80.12        22.32 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 
      116.12         9.40        34.39         2.14         5.39        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 
        8.05        20.94        31.40        18.54        27.88         4.34 
TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
       31.76        28.47        48.79        44.84        35.80         2.43 
TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 
       33.67        43.69         1.41         8.42         5.79        11.41 
TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 
       13.02         9.07        34.13        31.30        37.02        42.48 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       48.92        56.58        43.43        15.75        38.17         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 
        5.52        14.50        17.98         3.98        30.61        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       30.64         1.18        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 
       51.72        71.74        61.64        58.39        60.62        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
       55.50         6.48        76.83        20.68        44.52       125.72 
TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       22.22         6.35        31.07         8.58 

      16Q GAIN CNV 16Q GAIN WILD-TYPE 
              2.56               0.26 
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
             88.34             180.16 
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
             27.88              28.26 
[1] "2.6 - 88.3 (27.9)"  "0.3 - 180.2 (28.3)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "16Q GAIN CNV"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
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        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
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        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
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        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
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        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
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        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
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        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
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        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
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        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
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        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
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        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
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        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
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        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
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        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
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        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
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        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
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        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
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        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
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        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
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        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
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      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
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        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
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        TCGA-61-2614 
"16Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
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        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
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        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
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        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
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        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
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        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
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        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
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        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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      "16Q GAIN CNV"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
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        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
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        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
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        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
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        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
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        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
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        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
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        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
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        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
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        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
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        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
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        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
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        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
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        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
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        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
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        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
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        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
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        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
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        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
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        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
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        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
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        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
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        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
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        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
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        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
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        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
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        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
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        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
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        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
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        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
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        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
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        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
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        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
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        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
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        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
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        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
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        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2614 
"16Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D29V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  16Q GAIN CNV             0    16                0
  16Q GAIN WILD-TYPE       2   532                2
D29V3, multiclass
                  clus
vv                 16Q GAIN CNV 16Q GAIN WILD-TYPE
  OMENTUM                     0                  2
  OVARY                      16                532
  PERITONEUM OVARY            0                  2
D29V4, continuous
[1] "Remove cluster labels:" "16Q GAIN CNV"          
clus
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                 1                 75 
        TCGA-04-1346         TCGA-04-1347         TCGA-04-1351 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1356         TCGA-04-1367         TCGA-10-0925 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-10-0926         TCGA-13-0714         TCGA-13-0720 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0724         TCGA-13-0755         TCGA-13-0757 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0758         TCGA-13-0760         TCGA-13-0762 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0764         TCGA-13-0768         TCGA-13-0791 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0801         TCGA-13-0802         TCGA-13-0885 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0887         TCGA-13-0888         TCGA-13-0889 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0897         TCGA-13-0900 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0901         TCGA-13-0903         TCGA-13-0904 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0905         TCGA-13-0906         TCGA-13-0910 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0919         TCGA-13-1404         TCGA-13-1405 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1409         TCGA-13-1410         TCGA-13-1412 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1482         TCGA-13-1483         TCGA-13-1484 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1485         TCGA-13-1488         TCGA-13-1489 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1495 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1497         TCGA-13-1498         TCGA-13-1499 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1500         TCGA-13-1501         TCGA-13-1504 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1511         TCGA-13-1512         TCGA-13-2057 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-2060         TCGA-13-2061         TCGA-13-2071 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1614         TCGA-24-1930         TCGA-61-2101 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
                    vv
clus                 I+II III  IV
  16Q GAIN CNV          0   1   1
  16Q GAIN WILD-TYPE    4 132  33
D29V5, multiclass
[1] "Remove cluster labels:" "16Q GAIN CNV"          
clus
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                 2                169 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1654         TCGA-10-0925 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-10-0926         TCGA-10-0927         TCGA-10-0928 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-10-0930         TCGA-10-0931         TCGA-10-0933 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-10-0934         TCGA-10-0935         TCGA-10-0936 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-10-0937         TCGA-10-0938         TCGA-13-0807 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0883         TCGA-13-0885         TCGA-13-0886 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0887         TCGA-13-0888         TCGA-13-0889 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0890         TCGA-13-0891         TCGA-13-0897 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0903         TCGA-13-0904 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0910         TCGA-13-0911 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0912         TCGA-13-0913         TCGA-13-0916 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0919         TCGA-13-0920         TCGA-13-0921 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0923         TCGA-13-0924         TCGA-13-1477 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1481         TCGA-13-1482         TCGA-13-1483 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1484         TCGA-13-1485         TCGA-13-1487 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1488         TCGA-13-1489         TCGA-13-1491 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1492         TCGA-13-1494         TCGA-13-1495 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1496         TCGA-13-1497         TCGA-13-1498 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1499         TCGA-13-1500         TCGA-13-1501 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1504         TCGA-13-1505         TCGA-13-1506 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1507         TCGA-13-1509         TCGA-13-1511 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1512         TCGA-20-0987         TCGA-20-0990 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-0991         TCGA-20-0996         TCGA-23-1022 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1030 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1031         TCGA-23-1032         TCGA-23-1109 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1110         TCGA-23-1113         TCGA-23-1116 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-24-0966 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-0968         TCGA-24-0970         TCGA-24-0975 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-0979         TCGA-24-0980         TCGA-24-0982 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1103         TCGA-24-1104         TCGA-24-1105 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1416         TCGA-24-1417         TCGA-24-1418 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1419         TCGA-24-1422         TCGA-24-1423 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1424         TCGA-24-1426         TCGA-24-1427 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1920         TCGA-24-1923 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1924         TCGA-24-1927         TCGA-24-1928 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1930         TCGA-24-2020         TCGA-24-2023 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2026         TCGA-24-2027         TCGA-24-2029 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-30-1853         TCGA-30-1860 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-57-1992         TCGA-57-1993 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1724         TCGA-61-1728 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1917         TCGA-61-1918 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1919 
"16Q GAIN WILD-TYPE" 
D29V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN CNV          0   16
  16Q GAIN WILD-TYPE    3  543
     clus
vv    16Q GAIN CNV 16Q GAIN WILD-TYPE
  NO             0                  3
  YES           16                543
                    vv
clus                 R0 R1 R2
  16Q GAIN CNV        2  1  0
  16Q GAIN WILD-TYPE 12 25  2
D29V7, multiclass
    clus
vv   16Q GAIN CNV 16Q GAIN WILD-TYPE
  R0            2                 12
  R1            1                 25
  R2            0                  2

Clustering(30) Variable = 17p gain
D30V1, survival
                    sevent
clus2                  0   1
  17P GAIN CNV         9   1
  17P GAIN WILD-TYPE 254 283
      17P GAIN CNV 17P GAIN WILD-TYPE 
                10                537 
      17P GAIN CNV 17P GAIN WILD-TYPE 
                 1                283 
$`17P GAIN CNV`
TCGA-09-2051 TCGA-13-0800 TCGA-13-0920 TCGA-13-1412 TCGA-13-2057 TCGA-13-2060 
       63.09         8.12        13.81         5.33        14.24         8.58 
TCGA-20-1683 TCGA-23-1114 TCGA-36-1578 TCGA-61-1900 
       25.38        68.68        27.85         5.79 

$`17P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       63.98        65.46        49.28        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 
       76.54        71.47        82.36        56.55        41.59        19.99 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 
       38.37       119.08        29.06        84.20        55.40        48.89 
TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 
       27.88        28.64        64.64        36.23        31.86        47.70 
TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 
       45.34        29.16         9.47        57.73        17.95        35.54 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 
        9.96        38.43        89.33        74.89        41.59        57.57 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       61.87        55.36        30.48        17.98         5.85         3.02 
TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 
        8.55        97.55         6.15         6.12        35.15         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 
      112.37        71.11        39.75        20.91        26.93        12.46 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 
       54.31        25.91        81.47        18.48        33.24        32.28 
TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 
       11.70         3.88        35.41        35.80        15.12        19.86 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
        6.21        24.59        44.55        39.58         2.73        12.39 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 
       31.07        15.19        17.79        55.17         2.47        11.18 
TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 
       11.38        11.54        34.06        32.25        31.04        21.40 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 
        8.42        38.93        36.72        28.70        30.35        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 
        8.71         7.79         8.28         8.19        43.82        35.28 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 
       35.28        13.61        68.91       107.18        91.40        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
       66.64        70.39        61.81        67.99        69.01        43.36 
TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 
       57.47        56.15        57.07        19.36        47.38        48.33 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       47.84        44.94        44.84        37.08        27.68        34.06 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 
       29.98        21.14        14.89         4.64         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 
       10.88         6.61         7.36         6.05         5.92         6.84 
TCGA-13-1410 TCGA-13-1411 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.70         4.21        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 
       98.04        20.68        22.39        70.82        82.88        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 
       73.55        38.17        49.22         4.24        54.31        37.61 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       38.37        13.97        32.84        16.57         4.21         4.41 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 
        4.77         4.14         2.56         3.88         3.09        12.23 
TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
       10.78         8.75         6.28        23.05        25.94        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       72.20        27.48        19.07        16.67         2.93         2.66 
TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
       47.54        42.51        40.54        15.39        26.83        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 
       49.41         8.81        29.10        18.87         2.24        51.35 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
       54.51         3.22        31.20         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
      129.96         4.27         6.38        39.09        33.47        58.13 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
        0.53        24.95       115.89        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
       49.84         2.76         4.70         4.50         7.63        19.63 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 
       11.64        21.80        41.56         7.66        22.32        54.08 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       63.55        47.41         6.31         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 
        7.86         0.76         6.25         6.02         5.95         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 
        4.80        17.36        28.34        19.17        18.67        43.53 
TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 
        8.55        72.92        12.46        45.14       105.99         9.11 
TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
        3.42         1.18        22.19        26.96        57.37        64.27 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 
       16.21        56.58        41.06        51.91        41.39        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       88.50        70.62        39.88        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
       47.70        25.87        10.26        17.23        90.15        88.34 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 
       48.33        38.24         8.32         3.48         3.72         3.81 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
        4.37        11.28         5.75         5.49         9.80        22.65 
TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 
       30.21        16.41        11.05        81.11         4.87       151.99 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
       44.84        58.16        34.82       109.68        14.43        53.95 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 
       18.48        28.18        64.01        44.48        57.07        36.16 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
        0.79         0.36        47.54        31.63        70.45        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
        0.82        67.36        36.23        16.64        33.11        55.86 
TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       53.26         1.02        26.93        31.99        51.06        37.02 
TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 
        1.02        34.98        65.00        36.95        33.96         2.99 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 
       12.00         2.96        18.58        18.02        15.78         0.36 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 
       20.58         7.86         0.30        56.94        60.59        35.54 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
       51.22        14.93        24.99        18.05        85.05        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
       49.05         1.02        38.04         3.02        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       19.99        42.02         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       78.87        44.71        47.18       101.75        38.53         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
       33.70        31.17        68.28         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       59.67        18.25        41.95        29.23        34.62        17.00 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       85.68        66.77        62.93        39.09        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 
       24.36        22.52        17.29        12.36        11.84        12.30 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 
       14.93         8.35         7.20         5.36        34.62        86.17 
TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
       65.00        62.47        45.11         4.87        42.25        11.84 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 
       11.47         9.76        38.07        51.91        36.26         2.47 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 
       15.68         0.26        48.07        44.91        34.78         6.08 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
       36.62         1.18        57.57        24.26        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       45.57        30.18        18.77        22.45         6.71        42.51 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       44.09         2.17        28.73        29.06        21.53        22.85 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 
       22.55         8.55        30.05        25.74        24.23        24.69 
TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       35.05        33.01        29.49        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       23.80        21.60         2.24        20.98        18.31        20.52 
TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 
       14.17         6.05        16.14        11.47        14.30         9.07 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 
        9.44         7.56         7.46         7.63         1.48        24.03 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 
       11.38        21.14         1.74        22.32        28.96        25.05 
TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 
       25.02       180.16        80.12        22.32       116.12         9.40 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 
       34.39         2.14         5.39        44.78        11.11         8.05 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 
       20.94        31.40        18.54        27.88         4.34        31.76 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       28.47        48.79        44.84        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
       43.69         1.41         8.42        11.41        13.02         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
       34.13        31.30        37.02        42.48        48.92        56.58 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       67.73        43.43        15.75        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 
       14.50        17.98         3.98        30.61        39.85        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
        1.18        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
       71.74        61.64        58.39        60.62        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 
        6.48        76.83        20.68        44.52       125.72        22.22 
TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        6.35        31.07         8.58 

      17P GAIN CNV 17P GAIN WILD-TYPE 
              5.33               0.26 
      17P GAIN CNV 17P GAIN WILD-TYPE 
             68.68             180.16 
      17P GAIN CNV 17P GAIN WILD-TYPE 
            14.025             28.640 
[1] "5.3 - 68.7 (14.0)"  "0.3 - 180.2 (28.6)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "17P GAIN CNV" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2614 
"17P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "17P GAIN CNV" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2614 
"17P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "17P GAIN CNV" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2614 
"17P GAIN WILD-TYPE" 
[1] "hr=" "3.7"
D30V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  17P GAIN CNV             0    10                0
  17P GAIN WILD-TYPE       2   538                2
D30V3, multiclass
                  clus
vv                 17P GAIN CNV 17P GAIN WILD-TYPE
  OMENTUM                     0                  2
  OVARY                      10                538
  PERITONEUM OVARY            0                  2
D30V4, continuous
                    vv
clus                 I+II III  IV
  17P GAIN CNV          0   1   0
  17P GAIN WILD-TYPE    4 132  34
D30V5, multiclass
[1] "Remove cluster labels:" "17P GAIN CNV"          
clus
      17P GAIN CNV 17P GAIN WILD-TYPE 
                 1                170 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1654         TCGA-10-0925 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0926         TCGA-10-0927         TCGA-10-0928 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0930         TCGA-10-0931         TCGA-10-0933 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0934         TCGA-10-0935         TCGA-10-0936 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0937         TCGA-10-0938         TCGA-13-0807 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0883         TCGA-13-0885         TCGA-13-0886 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0887         TCGA-13-0888         TCGA-13-0889 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0890         TCGA-13-0891         TCGA-13-0897 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0903         TCGA-13-0904 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0910         TCGA-13-0911 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0912         TCGA-13-0913         TCGA-13-0916 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0919         TCGA-13-0921         TCGA-13-0923 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0924         TCGA-13-1477         TCGA-13-1481 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1482         TCGA-13-1483         TCGA-13-1484 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1485         TCGA-13-1487         TCGA-13-1488 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1489         TCGA-13-1491         TCGA-13-1492 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1494         TCGA-13-1495         TCGA-13-1496 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1497         TCGA-13-1498         TCGA-13-1499 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1500         TCGA-13-1501         TCGA-13-1504 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1505         TCGA-13-1506         TCGA-13-1507 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1509         TCGA-13-1510         TCGA-13-1511 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1512         TCGA-20-0987         TCGA-20-0990 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-0991         TCGA-20-0996         TCGA-23-1021 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1022         TCGA-23-1023         TCGA-23-1024 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1026         TCGA-23-1027         TCGA-23-1028 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1113 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1116         TCGA-23-1117         TCGA-23-1118 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1119         TCGA-23-1120         TCGA-23-1121 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1122         TCGA-23-1123         TCGA-23-1124 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1416         TCGA-24-1417 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1418         TCGA-24-1419         TCGA-24-1422 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1423         TCGA-24-1424         TCGA-24-1426 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1427         TCGA-24-1428         TCGA-24-1430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1431         TCGA-24-1434         TCGA-24-1435 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1436         TCGA-24-1463         TCGA-24-1464 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1466         TCGA-24-1467         TCGA-24-1920 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1923         TCGA-24-1924         TCGA-24-1927 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1928         TCGA-24-1930         TCGA-24-2020 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2023         TCGA-24-2026         TCGA-24-2027 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-25-1870         TCGA-25-1871 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1877         TCGA-25-1878         TCGA-30-1853 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1860         TCGA-30-1861         TCGA-30-1862 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1866         TCGA-30-1867         TCGA-30-1880 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1887         TCGA-30-1891         TCGA-30-1892 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1944         TCGA-31-1946         TCGA-31-1950 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1951         TCGA-31-1953         TCGA-31-1955 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1956         TCGA-31-1959         TCGA-57-1992 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-57-1993         TCGA-61-1721         TCGA-61-1724 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1743         TCGA-61-1917 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
D30V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN CNV          0   11
  17P GAIN WILD-TYPE    3  548
     clus
vv    17P GAIN CNV 17P GAIN WILD-TYPE
  NO             0                  3
  YES           11                548
                    vv
clus                 R0 R1 R2
  17P GAIN CNV        0  0  0
  17P GAIN WILD-TYPE 14 26  2
D30V7, multiclass

Clustering(31) Variable = 17q gain
D31V1, survival
                    sevent
clus2                  0   1
  17Q GAIN CNV        16   7
  17Q GAIN WILD-TYPE 247 277
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                23                524 
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                 7                277 
$`17Q GAIN CNV`
TCGA-04-1337 TCGA-09-2051 TCGA-10-0936 TCGA-13-0800 TCGA-13-0897 TCGA-13-0920 
        2.01        63.09        35.80         8.12        57.47        13.81 
TCGA-13-1408 TCGA-13-1412 TCGA-13-1477 TCGA-13-1483 TCGA-13-1489 TCGA-13-2057 
        5.92         5.33        54.61        29.39        82.88        14.24 
TCGA-13-2060 TCGA-23-1114 TCGA-24-1845 TCGA-25-1319 TCGA-36-1570 TCGA-36-1574 
        8.58        68.68         3.81        65.00        21.53        22.55 
TCGA-36-1578 TCGA-42-2593 TCGA-61-1737 TCGA-61-1900 TCGA-61-1914 
       27.85         1.48        44.84         5.79        56.58 

$`17Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00         1.81        49.15        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       11.87        65.49        63.06        48.76        21.57        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       65.46        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 
       71.47        82.36        56.55        41.59        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
      119.08        29.06        84.20        55.40        48.89        27.88 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 
       28.64        64.64        36.23        31.86        47.70        45.34 
TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 
       29.16         9.47        57.73        17.95        35.54         9.96 
TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 
       38.43        89.33        74.89        41.59        57.57        61.87 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 
       55.36        30.48        17.98         5.85         3.02         8.55 
TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 
       97.55         6.15         6.12        35.15         4.50       112.37 
TCGA-09-2050 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       71.11        39.75        20.91        26.93        12.46        54.31 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 
       25.91        81.47        18.48        33.24        32.28        11.70 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
        3.88        35.41        15.12        19.86         6.21        24.59 
TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 
       44.55        39.58         2.73        12.39        31.07        15.19 
TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 
       17.79        55.17         2.47        11.18        11.38        11.54 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       34.06        32.25        31.04        21.40         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       36.72        28.70        30.35        19.56         8.71         7.79 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.28         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 
       68.91       107.18        91.40        74.27        66.64        70.39 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0899 TCGA-13-0900 
       61.81        67.99        69.01        43.36        56.15        57.07 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 
       19.36        47.38        48.33        47.84        44.94        44.84 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 
       37.08        27.68        34.06        29.98        21.14        14.89 
TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 
        4.64         6.41         6.08        10.88         6.61         7.36 
TCGA-13-1407 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1481 TCGA-13-1482 
        6.05         6.84         4.70         4.21        87.06        61.71 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 
       98.04        20.68        22.39        70.82        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       38.17        49.22         4.24        54.31        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 
       13.97        32.84        16.57         4.21         4.41         4.77 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2061 
        4.14         2.56         3.88         3.09        12.23        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       27.48        25.38        19.07        16.67         2.93         2.66 
TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
       47.54        42.51        40.54        15.39        26.83        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 
       49.41         8.81        29.10        18.87         2.24        51.35 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
       54.51         3.22        31.20         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
      129.96         4.27         6.38        39.09        33.47        58.13 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
        0.53        24.95       115.89        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
       49.84         2.76         4.70         4.50         7.63        19.63 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 
       11.64        21.80        41.56         7.66        22.32        54.08 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       63.55        47.41         6.31         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 
        7.86         0.76         6.25         6.02         5.95         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 
        4.80        17.36        28.34        19.17        18.67        43.53 
TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 
        8.55        72.92        12.46        45.14       105.99         9.11 
TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
        3.42         1.18        22.19        26.96        57.37        64.27 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 
       16.21        56.58        41.06        51.91        41.39        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       88.50        70.62        39.88        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
       47.70        25.87        10.26        17.23        90.15        88.34 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 
       48.33        38.24         8.32         3.48         3.72         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 
       11.28         5.75         5.49         9.80        22.65        30.21 
TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 
       16.41        11.05        81.11         4.87       151.99        44.84 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 
       58.16        34.82       109.68        14.43        53.95        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 
       28.18        64.01        44.48        57.07        36.16         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
        0.36        47.54        31.63        70.45        44.58         0.82 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 
       67.36        36.23        16.64        33.11        55.86        53.26 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 
        1.02        26.93        31.99        51.06        37.02         1.02 
TCGA-25-1318 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 
       34.98        36.95        33.96         2.99        12.00         2.96 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 
       18.58        18.02        15.78         0.36        20.58         7.86 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 
        0.30        56.94        60.59        35.54        51.22        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       24.99        18.05        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
       38.04         3.02        12.00        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
        2.96        29.00        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 
       47.18       101.75        38.53         0.79        33.70        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 
       68.28         0.53        16.90        18.64        59.67        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 
       41.95        29.23        34.62        17.00        85.68        66.77 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 
       62.93        39.09        31.23        22.98        24.36        22.52 
TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 
       17.29        12.36        11.84        12.30        14.93         8.35 
TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 
        7.20         5.36        34.62        86.17        65.00        62.47 
TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 
       45.11         4.87        42.25        11.84        11.47         9.76 
TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 
       38.07        51.91        36.26         2.47        15.68         0.26 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 
       48.07        44.91        34.78         6.08        36.62         1.18 
TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
       57.57        24.26        30.05        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 
       18.77        22.45         6.71        42.51        44.09         2.17 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1571 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 
       28.73        29.06        22.85         8.55        30.05        25.74 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       24.23        24.69        35.05        33.01        29.49        29.79 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       25.91        25.08        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 
       18.31        20.52        14.17         6.05        16.14        11.47 
TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
       14.30         9.07         9.44         7.56         7.46         7.63 
TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 
       24.03        11.38        21.14         1.74        22.32        28.96 
TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 
       25.05        25.02       180.16        80.12        22.32       116.12 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 
        9.40        34.39         2.14         5.39        44.78        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 
        8.05        20.94        31.40        18.54        27.88         4.34 
TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       31.76        28.47        48.79        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
       43.69         1.41         8.42        11.41        13.02         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1915 
       34.13        31.30        37.02        42.48        48.92        67.73 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       43.43        15.75        38.17         1.97         5.52        14.50 
TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 
       17.98         3.98        30.61        39.85        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
       45.96        45.40         4.80         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       61.64        58.39        60.62        65.49        55.50         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 
       76.83        20.68        44.52       125.72        22.22         6.35 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

      17Q GAIN CNV 17Q GAIN WILD-TYPE 
              1.48               0.26 
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
             82.88             180.16 
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
            22.550             28.405 
[1] "1.5 - 82.9 (22.6)"  "0.3 - 180.2 (28.4)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2614 
"17Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
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        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
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        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
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        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
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        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
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        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
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        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
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        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
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        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
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        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
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        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
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        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
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        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
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        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
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        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
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        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
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      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
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      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
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        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
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        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
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        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
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        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2614 
"17Q GAIN WILD-TYPE" 
[1] "hr=" "1.7"
D31V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  17Q GAIN CNV             0    23                0
  17Q GAIN WILD-TYPE       2   525                2
D31V3, multiclass
                  clus
vv                 17Q GAIN CNV 17Q GAIN WILD-TYPE
  OMENTUM                     0                  2
  OVARY                      23                525
  PERITONEUM OVARY            0                  2
D31V4, continuous
                    vv
clus                 I+II III  IV
  17Q GAIN CNV          0   6   1
  17Q GAIN WILD-TYPE    4 127  33
D31V5, multiclass
      clus
vv     17Q GAIN CNV 17Q GAIN WILD-TYPE
  I+II            0                  4
  III             6                127
  IV              1                 33
D31V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN CNV          0   23
  17Q GAIN WILD-TYPE    3  536
     clus
vv    17Q GAIN CNV 17Q GAIN WILD-TYPE
  NO             0                  3
  YES           23                536
                    vv
clus                 R0 R1 R2
  17Q GAIN CNV        0  0  1
  17Q GAIN WILD-TYPE 14 26  1
D31V7, multiclass
[1] "Remove cluster labels:" "17Q GAIN CNV"          
clus
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                 1                 41 
        TCGA-04-1516         TCGA-04-1644         TCGA-13-0807 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-24-2033         TCGA-29-2414 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-2425         TCGA-29-2427         TCGA-29-2428 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-2429         TCGA-29-2431         TCGA-29-2432 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-2434         TCGA-29-2436         TCGA-36-2529 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2530         TCGA-36-2532         TCGA-36-2534 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2537         TCGA-36-2538         TCGA-36-2540 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2542         TCGA-36-2543         TCGA-36-2544 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2545         TCGA-36-2547         TCGA-36-2548 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2549         TCGA-36-2551         TCGA-36-2552 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2587         TCGA-42-2588 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-42-2589         TCGA-42-2590         TCGA-57-1993 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-59-2363         TCGA-59-2372         TCGA-61-2612 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 

Clustering(32) Variable = 18p gain
D32V1, survival
                    sevent
clus2                  0   1
  18P GAIN CNV        40  32
  18P GAIN WILD-TYPE 223 252
      18P GAIN CNV 18P GAIN WILD-TYPE 
                72                475 
      18P GAIN CNV 18P GAIN WILD-TYPE 
                32                252 
$`18P GAIN CNV`
TCGA-04-1347 TCGA-04-1371 TCGA-04-1516 TCGA-04-1525 TCGA-04-1542 TCGA-04-1644 
       63.06        82.36        41.59        38.37        84.20        48.89 
TCGA-04-1652 TCGA-09-1665 TCGA-09-2055 TCGA-10-0937 TCGA-13-0762 TCGA-13-0768 
       31.86        41.59        26.93        15.12        32.25         8.42 
TCGA-13-0795 TCGA-13-0885 TCGA-13-0888 TCGA-13-0899 TCGA-13-0901 TCGA-13-0904 
       19.56        91.40        70.39        56.15        19.36        48.33 
TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 TCGA-13-1497 TCGA-13-1510 TCGA-13-2059 
        6.05         5.92         4.70        54.31         2.56        12.23 
TCGA-13-2060 TCGA-20-1686 TCGA-23-1022 TCGA-23-1110 TCGA-23-1114 TCGA-23-1121 
        8.58         2.93        42.51        54.51        68.68         6.38 
TCGA-23-1123 TCGA-23-1809 TCGA-23-2077 TCGA-24-0968 TCGA-24-1430 TCGA-24-1466 
       33.47         0.53       115.89        19.63        28.34        45.14 
TCGA-24-1558 TCGA-24-1567 TCGA-24-1616 TCGA-24-1844 TCGA-24-1845 TCGA-24-1924 
       19.53        17.23        38.24         3.72         3.81        30.21 
TCGA-24-2020 TCGA-24-2026 TCGA-24-2030 TCGA-24-2289 TCGA-25-1314 TCGA-25-1318 
      151.99        34.82        53.95        67.36        31.99        34.98 
TCGA-25-1319 TCGA-25-1321 TCGA-25-1628 TCGA-25-1635 TCGA-25-2400 TCGA-29-1695 
       65.00        33.96        20.58        51.22        42.02         0.79 
TCGA-29-1711 TCGA-29-1778 TCGA-29-2425 TCGA-36-2537 TCGA-36-2547 TCGA-42-2589 
       34.62        14.93        65.00        25.91        20.52         7.56 
TCGA-57-1583 TCGA-57-1586 TCGA-57-1994 TCGA-61-1722 TCGA-61-1728 TCGA-61-1730 
       11.38        22.32        25.02         8.05        27.88         4.34 
TCGA-61-1899 TCGA-61-1907 TCGA-61-1917 TCGA-61-2018 TCGA-61-2096 TCGA-61-2614 
        8.42        31.30        43.43        45.40        58.39         8.58 

$`18P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       18.51        11.87        65.49        48.76        21.57        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       65.46        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1514 TCGA-04-1517 TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 
       71.47        56.55        19.99       119.08        29.06        55.40 
TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1654 TCGA-04-1655 
       27.88        28.64        64.64        36.23        47.70        45.34 
TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 
       29.16         9.47        57.73        17.95        35.54         9.96 
TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       38.43        89.33        74.89        57.57        61.87        55.36 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 
       30.48        17.98         5.85         3.02         8.55        97.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
        6.15         6.12        35.15         4.50       112.37        71.11 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       63.09        39.75        20.91        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       81.47        18.48        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 
       35.41        35.80        19.86         6.21        24.59        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       39.58         2.73        12.39        31.07        15.19        17.79 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       55.17         2.47        11.18        11.38        11.54        34.06 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 
       31.04        21.40        38.93        36.72        28.70        30.35 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 
        8.71         7.79         8.12         8.28         8.19        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0886 
       35.28        35.28        13.61        68.91       107.18        74.27 
TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 
       66.64        61.81        67.99        69.01        43.36        57.47 
TCGA-13-0900 TCGA-13-0903 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       57.07        47.38        47.84        44.94        44.84        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 
       27.68        34.06        29.98        21.14        14.89        13.81 
TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 
        4.64         6.41         6.08        10.88         6.61         7.36 
TCGA-13-1409 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
        6.84         4.21         5.33        54.61        87.06        61.71 
TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 
       29.39        98.04        20.68        22.39        70.82        82.88 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1498 
       52.44        73.55        38.17        49.22         4.24        37.61 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       38.37        13.97        32.84        16.57         4.21         4.41 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2061 
        4.77         4.14         3.88         3.09        14.24        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1687 TCGA-23-1021 
       27.48        25.38        19.07        16.67         2.66        47.54 
TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 
       40.54        15.39        26.83        31.73        49.41         8.81 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1111 TCGA-23-1113 
       29.10        18.87         2.24        51.35         3.22        31.20 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1122 
        4.57        33.30        86.01       129.96         4.27        39.09 
TCGA-23-1124 TCGA-23-2072 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 
       58.13        24.95        87.48        91.66        77.00        49.84 
TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0970 TCGA-24-0975 
        2.76         4.70         4.50         7.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       41.56         7.66        22.32        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 
        6.31         6.38         7.82         7.99         7.86         0.76 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        6.25         6.02         5.95         5.36         4.80        17.36 
TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 
       19.17        18.67        43.53         8.55        72.92        12.46 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 
      105.99         9.11         3.42         1.18        22.19        26.96 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       57.37        64.27        16.21        56.58        41.06        51.91 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1560 
       41.39        58.09        88.50        70.62        39.88        44.09 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 TCGA-24-1604 
       45.50        47.70        25.87        10.26        90.15        88.34 
TCGA-24-1614 TCGA-24-1842 TCGA-24-1843 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 
       48.33         8.32         3.48         4.37        11.28         5.75 
TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        5.49         9.80        22.65        16.41        11.05        81.11 
TCGA-24-2019 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 TCGA-24-2033 
        4.87        44.84        58.16       109.68        14.43        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 
       28.18        64.01        44.48        57.07        36.16         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
        0.36        47.54        31.63        70.45        44.58         0.82 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 
       36.23        16.64        33.11        55.86        53.26         1.02 
TCGA-25-1313 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1320 TCGA-25-1322 
       26.93        51.06        37.02         1.02        36.95         2.99 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 
       12.00         2.96        18.58        18.02        15.78         0.36 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 
        7.86         0.30        56.94        60.59        35.54        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       24.99        18.05        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2401 
       38.04         3.02        12.00        45.01        19.99         2.96 
TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 
       29.00        30.97        26.96        78.87        44.71        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 
      101.75        38.53        33.70        31.17        68.28         0.53 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       16.90        18.64        59.67        18.25        41.95        29.23 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 
       17.00        85.68        66.77        62.93        39.09        31.23 
TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 
       22.98        24.36        22.52        17.29        12.36        11.84 
TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 
       12.30         8.35         7.20         5.36        34.62        86.17 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 
       62.47        45.11         4.87        42.25        11.84        11.47 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 
        9.76        38.07        51.91        36.26         2.47        15.68 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 
        0.26        48.07        44.91        34.78         6.08        36.62 
TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 
        1.18        57.57        24.26        30.05        48.79        45.57 
TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 
       30.18        18.77        22.45         6.71        42.51        44.09 
TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 
        2.17        28.73        29.06        21.53        22.85        22.55 
TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 
        8.55        30.05        25.74        27.85        24.23        24.69 
TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2538 TCGA-36-2540 
       35.05        33.01        29.49        29.79        25.08        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2548 TCGA-36-2549 
       21.60         2.24        20.98        18.31        14.17         6.05 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2590 
       16.14        11.47        14.30         9.07         9.44         7.46 
TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1584 TCGA-57-1585 TCGA-57-1992 
        7.63         1.48        24.03        21.14         1.74        28.96 
TCGA-57-1993 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 
       25.05       180.16        80.12        22.32       116.12         9.40 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1724 
       34.39         2.14         5.39        44.78        11.11        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       31.40        18.54        31.76        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1900 
       35.80         2.43        33.67        43.69         1.41         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 TCGA-61-1911 
       11.41        13.02         9.07        34.13        37.02        42.48 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       48.92        56.58        67.73        15.75        38.17         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 
        5.52        14.50        17.98         3.98        30.61        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
       30.64         1.18        45.96         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       71.74        61.64        60.62        65.49        55.50         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 
       76.83        20.68        44.52       125.72        22.22         6.35 
TCGA-61-2613 
       31.07 

      18P GAIN CNV 18P GAIN WILD-TYPE 
              0.53               0.26 
      18P GAIN CNV 18P GAIN WILD-TYPE 
            151.99             180.16 
      18P GAIN CNV 18P GAIN WILD-TYPE 
             31.58              27.68 
[1] "0.5 - 152.0 (31.6)" "0.3 - 180.2 (27.7)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "18P GAIN CNV" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
      "18P GAIN CNV" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"18P GAIN WILD-TYPE"       "18P GAIN CNV"       "18P GAIN CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "18P GAIN CNV" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2614 
      "18P GAIN CNV" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "18P GAIN CNV" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
      "18P GAIN CNV" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"18P GAIN WILD-TYPE"       "18P GAIN CNV"       "18P GAIN CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "18P GAIN CNV" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2614 
      "18P GAIN CNV" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "18P GAIN CNV" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
      "18P GAIN CNV" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"18P GAIN WILD-TYPE"       "18P GAIN CNV"       "18P GAIN CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "18P GAIN CNV" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2614 
      "18P GAIN CNV" 
[1] "hr=" "1.3"
D32V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  18P GAIN CNV             0    72                0
  18P GAIN WILD-TYPE       2   476                2
D32V3, multiclass
                  clus
vv                 18P GAIN CNV 18P GAIN WILD-TYPE
  OMENTUM                     0                  2
  OVARY                      72                476
  PERITONEUM OVARY            0                  2
D32V4, continuous
                    vv
clus                 I+II III  IV
  18P GAIN CNV          0  18   2
  18P GAIN WILD-TYPE    4 115  32
D32V5, multiclass
      clus
vv     18P GAIN CNV 18P GAIN WILD-TYPE
  I+II            0                  4
  III            18                115
  IV              2                 32
D32V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN CNV          0   74
  18P GAIN WILD-TYPE    3  485
     clus
vv    18P GAIN CNV 18P GAIN WILD-TYPE
  NO             0                  3
  YES           74                485
                    vv
clus                 R0 R1 R2
  18P GAIN CNV        3  4  0
  18P GAIN WILD-TYPE 11 22  2
D32V7, multiclass
    clus
vv   18P GAIN CNV 18P GAIN WILD-TYPE
  R0            3                 11
  R1            4                 22
  R2            0                  2

Clustering(33) Variable = 18q gain
D33V1, survival
                    sevent
clus2                  0   1
  18Q GAIN CNV        20  20
  18Q GAIN WILD-TYPE 243 264
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                40                507 
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                20                264 
$`18Q GAIN CNV`
TCGA-04-1516 TCGA-04-1644 TCGA-04-1652 TCGA-09-1661 TCGA-09-1665 TCGA-09-2055 
       41.59        48.89        31.86        38.43        41.59        26.93 
TCGA-13-0717 TCGA-13-0762 TCGA-13-0795 TCGA-13-0901 TCGA-13-0904 TCGA-13-1410 
       24.59        32.25        19.56        19.36        48.33         4.70 
TCGA-13-1497 TCGA-13-1510 TCGA-13-2060 TCGA-23-1114 TCGA-23-1123 TCGA-23-1809 
       54.31         2.56         8.58        68.68        33.47         0.53 
TCGA-24-0968 TCGA-24-1430 TCGA-24-1466 TCGA-24-1845 TCGA-24-1924 TCGA-24-2026 
       19.63        28.34        45.14         3.81        30.21        34.82 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1635 TCGA-29-1695 TCGA-29-1705 TCGA-29-1778 
       34.98        65.00        51.22         0.79        18.25        14.93 
TCGA-29-1784 TCGA-36-2537 TCGA-61-1722 TCGA-61-1899 TCGA-61-1907 TCGA-61-1917 
        5.36        25.91         8.05         8.42        31.30        43.43 
TCGA-61-1998 TCGA-61-2012 TCGA-61-2101 TCGA-61-2614 
        5.52        30.64        55.50         8.58 

$`18Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       63.98        65.46        49.28        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 TCGA-04-1525 
       76.54        71.47        82.36        56.55        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1646 TCGA-04-1648 
      119.08        29.06        84.20        55.40        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       64.64        36.23        47.70        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 
       57.73        17.95        35.54         9.96        89.33        74.89 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 
       57.57        61.87        55.36        30.48        17.98         5.85 
TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 
        3.02         8.55        97.55         6.15         6.12        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 
        4.50       112.37        71.11        63.09        39.75        20.91 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
       12.46        54.31        25.91        81.47        18.48        33.24 
TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 
       32.28        11.70         3.88        35.41        35.80        15.12 
TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
       19.86         6.21        44.55        39.58         2.73        12.39 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 
       31.07        15.19        17.79        55.17         2.47        11.18 
TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.38        11.54        34.06        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 
       38.93        36.72        28.70        30.35         8.71         7.79 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        8.12         8.28         8.19        43.82        35.28        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       13.61        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 
       70.39        61.81        67.99        69.01        43.36        57.47 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0903 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 
       56.15        57.07        47.38        47.84        44.94        44.84 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 
       37.08        27.68        34.06        29.98        21.14        14.89 
TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 
       13.81         4.64         6.41         6.08        10.88         6.61 
TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1411 TCGA-13-1412 
        7.36         6.05         5.92         6.84         4.21         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
       54.61        87.06        61.71        29.39        98.04        20.68 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 
       22.39        70.82        82.88        52.44        73.55        38.17 
TCGA-13-1495 TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 
       49.22         4.24        37.61        38.37        13.97        32.84 
TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1511 
       16.57         4.21         4.41         4.77         4.14         3.88 
TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
        3.09        14.24        12.23        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 
       23.05        25.94        26.20        72.20        27.48        25.38 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 
       19.07        16.67         2.93         2.66        47.54        42.51 
TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 
       40.54        15.39        26.83        31.73        49.41         8.81 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 
       29.10        18.87         2.24        51.35        54.51         3.22 
TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       31.20         4.57        33.30        86.01       129.96         4.27 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 
        6.38        39.09        58.13        24.95       115.89        87.48 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
       91.66        77.00        49.84         2.76         4.70         4.50 
TCGA-24-0966 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 
        7.63        11.64        21.80        41.56         7.66        22.32 
TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 
       54.08        63.55        47.41         6.31         6.38         7.82 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 
        7.99         7.86         0.76         6.25         6.02         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 
        5.36         4.80        17.36        19.17        18.67        43.53 
TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
        8.55        72.92        12.46       105.99         9.11         3.42 
TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 
        1.18        22.19        26.96        57.37        64.27        16.21 
TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 
       56.58        41.06        51.91        41.39        58.09        88.50 
TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 
       70.62        39.88        19.53        44.09        45.50        47.70 
TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 
       25.87        10.26        17.23        90.15        88.34        48.33 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 TCGA-24-1847 
       38.24         8.32         3.48         3.72         4.37        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 TCGA-24-1928 
        5.75         5.49         9.80        22.65        16.41        11.05 
TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 
       81.11         4.87       151.99        44.84        58.16       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
       14.43        53.95        18.48        28.18        64.01        44.48 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       57.07        36.16         0.79         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       70.45        44.58         0.82        67.36        36.23        16.64 
TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 
       33.11        55.86        53.26         1.02        26.93        31.99 
TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 
       51.06        37.02         1.02        36.95        33.96         2.99 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 
       12.00         2.96        18.58        18.02        15.78         0.36 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 
       20.58         7.86         0.30        56.94        60.59        35.54 
TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       14.93        24.99        18.05        85.05        13.02        49.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
        1.02        38.04         3.02        12.00        45.01        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 
       42.02         2.96        29.00        30.97        26.96        78.87 
TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 
       44.71        47.18       101.75        38.53        33.70        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1707 
       68.28         0.53        16.90        18.64        59.67        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 
       29.23        34.62        17.00        85.68        66.77        62.93 
TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 
       39.09        31.23        22.98        24.36        22.52        17.29 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-1785 
       12.36        11.84        12.30         8.35         7.20        34.62 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 
       86.17        65.00        62.47        45.11         4.87        42.25 
TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 
       11.84        11.47         9.76        38.07        51.91        36.26 
TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 
        2.47        15.68         0.26        48.07        44.91        34.78 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
        6.08        36.62         1.18        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 
       48.79        45.57        30.18        18.77        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       42.51        44.09         2.17        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       22.85        22.55         8.55        30.05        25.74        27.85 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       24.23        24.69        35.05        33.01        29.49        29.79 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.08        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 
       20.52        14.17         6.05        16.14        11.47        14.30 
TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 
        9.07         9.44         7.56         7.46         7.63         1.48 
TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 
       24.03        11.38        21.14         1.74        22.32        28.96 
TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 
       25.05        25.02       180.16        80.12        22.32       116.12 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 
        9.40        34.39         2.14         5.39        44.78        11.11 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 
       20.94        31.40        18.54        27.88         4.34        31.76 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       28.47        48.79        44.84        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
       43.69         1.41         5.79        11.41        13.02         9.07 
TCGA-61-1906 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 
       34.13        37.02        42.48        48.92        56.58        67.73 
TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
       15.75        38.17         1.97        14.50        17.98         3.98 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
       30.61        39.85         1.18        45.96        45.40         4.80 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 
        4.77        51.72        71.74        61.64        58.39        60.62 
TCGA-61-2098 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
       65.49         6.48        76.83        20.68        44.52       125.72 
TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 
       22.22         6.35        31.07 

      18Q GAIN CNV 18Q GAIN WILD-TYPE 
              0.53               0.26 
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
             68.68             180.16 
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
            29.275             27.880 
[1] "0.5 - 68.7 (29.3)"  "0.3 - 180.2 (27.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
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        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
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        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
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        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
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        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
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        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
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        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
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        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
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        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
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"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
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        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
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        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
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        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
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        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
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        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
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        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
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        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
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        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
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        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
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        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
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        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
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        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
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        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
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        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
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        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
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        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
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        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
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        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
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        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
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        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
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        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
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        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "18Q GAIN CNV"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
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        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
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        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
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        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
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        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2614 
      "18Q GAIN CNV" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "18Q GAIN CNV"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2614 
      "18Q GAIN CNV" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
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        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
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        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
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        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
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        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
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        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
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        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
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        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
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        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
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        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
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        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "18Q GAIN CNV"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2614 
      "18Q GAIN CNV" 
[1] "hr=" "1.2"
D33V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  18Q GAIN CNV             0    40                0
  18Q GAIN WILD-TYPE       2   508                2
D33V3, multiclass
                  clus
vv                 18Q GAIN CNV 18Q GAIN WILD-TYPE
  OMENTUM                     0                  2
  OVARY                      40                508
  PERITONEUM OVARY            0                  2
D33V4, continuous
                    vv
clus                 I+II III  IV
  18Q GAIN CNV          0  10   0
  18Q GAIN WILD-TYPE    4 123  34
D33V5, multiclass
      clus
vv     18Q GAIN CNV 18Q GAIN WILD-TYPE
  I+II            0                  4
  III            10                123
  IV              0                 34
D33V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN CNV          1   40
  18Q GAIN WILD-TYPE    2  519
     clus
vv    18Q GAIN CNV 18Q GAIN WILD-TYPE
  NO             1                  2
  YES           40                519
                    vv
clus                 R0 R1 R2
  18Q GAIN CNV        1  3  0
  18Q GAIN WILD-TYPE 13 23  2
D33V7, multiclass
    clus
vv   18Q GAIN CNV 18Q GAIN WILD-TYPE
  R0            1                 13
  R1            3                 23
  R2            0                  2

Clustering(34) Variable = 19p gain
D34V1, survival
                    sevent
clus2                  0   1
  19P GAIN CNV        47  49
  19P GAIN WILD-TYPE 216 235
      19P GAIN CNV 19P GAIN WILD-TYPE 
                96                451 
      19P GAIN CNV 19P GAIN WILD-TYPE 
                49                235 
$`19P GAIN CNV`
TCGA-04-1335 TCGA-04-1342 TCGA-04-1346 TCGA-04-1514 TCGA-04-1525 TCGA-04-1542 
        1.81        18.51        65.49        56.55        38.37        84.20 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1652 TCGA-09-0367 TCGA-09-1665 TCGA-09-1667 
       28.64        64.64        31.86        17.95        41.59        61.87 
TCGA-09-1670 TCGA-09-1674 TCGA-09-2043 TCGA-09-2054 TCGA-10-0926 TCGA-10-0933 
       17.98         8.55         6.15        20.91        25.91        11.70 
TCGA-10-0938 TCGA-13-0727 TCGA-13-0764 TCGA-13-0802 TCGA-13-0807 TCGA-13-0883 
       19.86        15.19        31.04         8.19        13.61        68.91 
TCGA-13-0884 TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 TCGA-13-1491 TCGA-13-1506 
      107.18         6.05         5.92         4.70        52.44         4.41 
TCGA-13-1510 TCGA-13-2057 TCGA-20-0990 TCGA-20-0991 TCGA-20-1686 TCGA-23-1024 
        2.56        14.24        25.94        26.20         2.93        15.39 
TCGA-23-1109 TCGA-23-1111 TCGA-23-1116 TCGA-23-1117 TCGA-23-1121 TCGA-23-1809 
       51.35         3.22         4.57        33.30         6.38         0.53 
TCGA-24-1417 TCGA-24-1426 TCGA-24-1428 TCGA-24-1436 TCGA-24-1548 TCGA-24-1551 
        7.82         5.36        17.36         8.55        16.21        51.91 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 
       39.88        19.53        48.33        38.24         3.48         3.72 
TCGA-24-1845 TCGA-24-1920 TCGA-24-2020 TCGA-24-2033 TCGA-24-2261 TCGA-24-2267 
        3.81         9.80       151.99        18.48         0.79        47.54 
TCGA-24-2295 TCGA-25-1314 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       33.11        31.99        34.98        65.00        36.95        33.96 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-29-1695 TCGA-29-1698 TCGA-29-1702 
       12.00         2.96        18.58         0.79        68.28        18.64 
TCGA-29-1711 TCGA-29-1770 TCGA-29-1783 TCGA-29-2432 TCGA-29-2434 TCGA-30-1714 
       34.62        24.36         7.20        11.84        11.47        38.07 
TCGA-30-1862 TCGA-31-1950 TCGA-36-2547 TCGA-36-2552 TCGA-57-1583 TCGA-57-1586 
        6.08        18.77        20.52        11.47        11.38        22.32 
TCGA-59-2348 TCGA-59-2351 TCGA-59-2355 TCGA-61-1730 TCGA-61-1899 TCGA-61-1904 
      180.16       116.12         2.14         4.34         8.42         9.07 
TCGA-61-1911 TCGA-61-1918 TCGA-61-2000 TCGA-61-2009 TCGA-61-2097 TCGA-61-2104 
       42.48        15.75        14.50        39.85        60.62        76.83 

$`19P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1343 
       40.24        41.00        49.15         2.01        46.62        11.87 
TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 
       63.06        48.76        21.57        63.98        65.46        49.28 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 
       32.52        44.32        33.67        76.54        71.47        82.36 
TCGA-04-1516 TCGA-04-1517 TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 
       41.59        19.99       119.08        29.06        55.40        48.89 
TCGA-04-1646 TCGA-04-1651 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       27.88        36.23        47.70        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
       57.73        35.54         9.96        38.43        89.33        74.89 
TCGA-09-1666 TCGA-09-1668 TCGA-09-1669 TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 
       57.57        55.36        30.48         5.85         3.02        97.55 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
        6.12        35.15         4.50       112.37        71.11        63.09 
TCGA-09-2053 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0927 TCGA-10-0928 
       39.75        26.93        12.46        54.31        81.47        18.48 
TCGA-10-0930 TCGA-10-0931 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 
       33.24        32.28         3.88        35.41        35.80        15.12 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
        6.21        24.59        44.55        39.58         2.73        12.39 
TCGA-13-0726 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       31.07        17.79        55.17         2.47        11.18        11.38 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       11.54        34.06        32.25        21.40         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       36.72        28.70        30.35        19.56         8.71         7.79 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0885 
        8.12         8.28        43.82        35.28        35.28        91.40 
TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
       74.27        66.64        70.39        61.81        67.99        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 
       43.36        57.47        56.15        57.07        19.36        47.38 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       48.33        47.84        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       34.06        29.98        21.14        14.89        13.81         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1409 
        6.41         6.08        10.88         6.61         7.36         6.84 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.21         5.33        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1492 
       98.04        20.68        22.39        70.82        82.88        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       38.17        49.22         4.24        54.31        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1507 TCGA-13-1509 
       13.97        32.84        16.57         4.21         4.77         4.14 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 
        3.88         3.09        12.23         8.58        10.78         8.75 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 
        6.28        23.05        72.20        27.48        25.38        19.07 
TCGA-20-1685 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 
       16.67         2.66        47.54        42.51        40.54        26.83 
TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       31.73        49.41         8.81        29.10        18.87         2.24 
TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       54.51        31.20        68.68        86.01       129.96         4.27 
TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 
       39.09        33.47        58.13        24.95       115.89        87.48 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
       91.66        77.00        49.84         2.76         4.70         4.50 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       22.32        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 
        7.99         7.86         0.76         6.25         6.02         5.95 
TCGA-24-1427 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 
        4.80        28.34        19.17        18.67        43.53        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 
       12.46        45.14       105.99         9.11         3.42         1.18 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 
       22.19        26.96        57.37        64.27        56.58        41.06 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1560 TCGA-24-1562 
       41.39        58.09        88.50        70.62        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
       47.70        25.87        10.26        17.23        90.15        88.34 
TCGA-24-1842 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1923 
        8.32         4.37        11.28         5.75         5.49        22.65 
TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2023 
       30.21        16.41        11.05        81.11         4.87        44.84 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 
       58.16        34.82       109.68        14.43        53.95        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2262 TCGA-24-2271 
       64.01        44.48        57.07        36.16         0.36        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       70.45        44.58         0.82        67.36        36.23        16.64 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1315 TCGA-25-1316 
       55.86        53.26         1.02        26.93        51.06        37.02 
TCGA-25-1317 TCGA-25-1322 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
        1.02         2.99        18.02        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 
        7.86         0.30        56.94        60.59        35.54        51.22 
TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       14.93        24.99        18.05        85.05        13.02        49.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
        1.02        38.04         3.02        12.00        45.01        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 
       42.02         2.96        29.00        30.97        26.96        78.87 
TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 
       44.71        47.18       101.75        38.53        33.70        31.17 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
        0.53        16.90        59.67        18.25        41.95        29.23 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 
       17.00        85.68        66.77        62.93        39.09        31.23 
TCGA-29-1769 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 
       22.98        22.52        17.29        12.36        11.84        12.30 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
       14.93         8.35         5.36        34.62        86.17        65.00 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2436 TCGA-30-1718 
       62.47        45.11         4.87        42.25         9.76        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 
       36.26         2.47        15.68         0.26        48.07        44.91 
TCGA-30-1861 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
       34.78        36.62         1.18        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       48.79        45.57        30.18        22.45         6.71        42.51 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       44.09         2.17        28.73        29.06        21.53        22.85 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
       22.55         8.55        30.05        25.74        27.85        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       24.69        35.05        33.01        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.08        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 
       14.17         6.05        16.14        14.30         9.07         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1584 
        7.56         7.46         7.63         1.48        24.03        21.14 
TCGA-57-1585 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2349 TCGA-59-2350 
        1.74        28.96        25.05        25.02        80.12        22.32 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 
        9.40        34.39         5.39        44.78        11.11         8.05 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 TCGA-61-1734 
       20.94        31.40        18.54        27.88        31.76        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 
       48.79        44.84        35.80         2.43        33.67        43.69 
TCGA-61-1895 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1906 TCGA-61-1907 
        1.41         5.79        11.41        13.02        34.13        31.30 
TCGA-61-1910 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1919 
       37.02        48.92        56.58        67.73        43.43        38.17 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2012 
        1.97         5.52        17.98         3.98        30.61        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
        1.18        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       71.74        61.64        58.39        65.49        55.50         6.48 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 
       20.68        44.52       125.72        22.22         6.35        31.07 
TCGA-61-2614 
        8.58 

      19P GAIN CNV 19P GAIN WILD-TYPE 
              0.53               0.26 
      19P GAIN CNV 19P GAIN WILD-TYPE 
            180.16             129.96 
      19P GAIN CNV 19P GAIN WILD-TYPE 
            18.545             29.390 
[1] "0.5 - 180.2 (18.5)" "0.3 - 130.0 (29.4)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2614 
"19P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2614 
"19P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2614 
"19P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D34V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  19P GAIN CNV             0    97                0
  19P GAIN WILD-TYPE       2   451                2
D34V3, multiclass
                  clus
vv                 19P GAIN CNV 19P GAIN WILD-TYPE
  OMENTUM                     0                  2
  OVARY                      97                451
  PERITONEUM OVARY            0                  2
D34V4, continuous
                    vv
clus                 I+II III  IV
  19P GAIN CNV          2  20   5
  19P GAIN WILD-TYPE    2 113  29
D34V5, multiclass
      clus
vv     19P GAIN CNV 19P GAIN WILD-TYPE
  I+II            2                  2
  III            20                113
  IV              5                 29
D34V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN CNV          1   97
  19P GAIN WILD-TYPE    2  462
     clus
vv    19P GAIN CNV 19P GAIN WILD-TYPE
  NO             1                  2
  YES           97                462
                    vv
clus                 R0 R1 R2
  19P GAIN CNV        3  3  0
  19P GAIN WILD-TYPE 11 23  2
D34V7, multiclass
    clus
vv   19P GAIN CNV 19P GAIN WILD-TYPE
  R0            3                 11
  R1            3                 23
  R2            0                  2

Clustering(35) Variable = 19q gain
D35V1, survival
                    sevent
clus2                  0   1
  19Q GAIN CNV        40  48
  19Q GAIN WILD-TYPE 223 236
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
                88                459 
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
                48                236 
$`19Q GAIN CNV`
TCGA-04-1342 TCGA-04-1346 TCGA-04-1516 TCGA-04-1525 TCGA-04-1536 TCGA-04-1542 
       18.51        65.49        41.59        38.37        29.06        84.20 
TCGA-04-1648 TCGA-04-1652 TCGA-09-0364 TCGA-09-0365 TCGA-09-1670 TCGA-09-1674 
       28.64        31.86        29.16         9.47        17.98         8.55 
TCGA-09-2043 TCGA-10-0926 TCGA-10-0933 TCGA-13-0717 TCGA-13-0727 TCGA-13-0802 
        6.15        25.91        11.70        24.59        15.19         8.19 
TCGA-13-0883 TCGA-13-0885 TCGA-13-0920 TCGA-13-1408 TCGA-13-1410 TCGA-13-1492 
       68.91        91.40        13.81         5.92         4.70        73.55 
TCGA-13-1504 TCGA-13-1506 TCGA-20-0990 TCGA-20-0991 TCGA-23-1022 TCGA-23-1111 
       16.57         4.41        25.94        26.20        42.51         3.22 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1121 TCGA-23-1809 TCGA-24-1417 TCGA-24-1426 
        4.57        33.30         6.38         0.53         7.82         5.36 
TCGA-24-1428 TCGA-24-1434 TCGA-24-1436 TCGA-24-1548 TCGA-24-1551 TCGA-24-1552 
       17.36        18.67         8.55        16.21        51.91        41.39 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 
       39.88        19.53        48.33        38.24         3.48         3.72 
TCGA-24-1845 TCGA-24-1847 TCGA-24-1923 TCGA-24-2020 TCGA-24-2033 TCGA-24-2261 
        3.81        11.28        22.65       151.99        18.48         0.79 
TCGA-24-2267 TCGA-24-2295 TCGA-25-1312 TCGA-25-1314 TCGA-25-1317 TCGA-25-1318 
       47.54        33.11         1.02        31.99         1.02        34.98 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 
       65.00        36.95        33.96        12.00         2.96        18.58 
TCGA-29-1695 TCGA-29-1698 TCGA-29-1701 TCGA-29-1770 TCGA-29-1775 TCGA-29-2432 
        0.79        68.28        16.90        24.36        12.36        11.84 
TCGA-29-2434 TCGA-30-1714 TCGA-30-1718 TCGA-36-1578 TCGA-36-2552 TCGA-57-1586 
       11.47        38.07        51.91        27.85        11.47        22.32 
TCGA-59-2348 TCGA-59-2351 TCGA-61-1722 TCGA-61-1730 TCGA-61-1741 TCGA-61-1904 
      180.16       116.12         8.05         4.34        33.67         9.07 
TCGA-61-1911 TCGA-61-1918 TCGA-61-2009 TCGA-61-2097 
       42.48        15.75        39.85        60.62 

$`19Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1343 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 
       11.87        63.06        48.76        21.57        63.98        65.46 
TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       49.28        32.52        44.32        33.67        76.54        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 TCGA-04-1530 TCGA-04-1638 TCGA-04-1644 
       82.36        56.55        19.99       119.08        55.40        48.89 
TCGA-04-1646 TCGA-04-1649 TCGA-04-1651 TCGA-04-1654 TCGA-04-1655 TCGA-09-0366 
       27.88        64.64        36.23        47.70        45.34        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
       17.95        35.54         9.96        38.43        89.33        74.89 
TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1672 
       41.59        57.57        61.87        55.36        30.48         5.85 
TCGA-09-1673 TCGA-09-1675 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 
        3.02        97.55         6.12        35.15         4.50       112.37 
TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 
       71.11        63.09        39.75        20.91        26.93        12.46 
TCGA-10-0925 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0934 
       54.31        81.47        18.48        33.24        32.28         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 
       35.41        35.80        15.12        19.86         6.21        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0730 TCGA-13-0751 
       39.58         2.73        12.39        31.07        17.79        55.17 
TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 
        2.47        11.18        11.38        11.54        34.06        32.25 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 
       31.04        21.40         8.42        38.93        36.72        28.70 
TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 
       30.35        19.56         8.71         7.79         8.12         8.28 
TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0884 TCGA-13-0886 
       43.82        35.28        35.28        13.61       107.18        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
       66.64        70.39        61.81        67.99        69.01        43.36 
TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 
       57.47        56.15        57.07        19.36        47.38        48.33 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       47.84        44.94        44.84        37.08        27.68        34.06 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 
       29.98        21.14        14.89         4.64         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1409 TCGA-13-1411 
       10.88         6.61         7.36         6.05         6.84         4.21 
TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 
        5.33        54.61        87.06        61.71        29.39        98.04 
TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 
       20.68        22.39        70.82        82.88        52.44        38.17 
TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       49.22         4.24        54.31        37.61        38.37        13.97 
TCGA-13-1501 TCGA-13-1505 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
       32.84         4.21         4.77         4.14         2.56         3.88 
TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 
        3.09        14.24        12.23         8.58        10.78         8.75 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 
        6.28        23.05        72.20        27.48        25.38        19.07 
TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 
       16.67         2.93         2.66        47.54        40.54        15.39 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       26.83        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 TCGA-23-1118 
        2.24        51.35        54.51        31.20        68.68        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-2072 
      129.96         4.27        39.09        33.47        58.13        24.95 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
      115.89        87.48        91.66        77.00        49.84         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        4.70         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       41.56         7.66        22.32        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 
        6.31         6.38         7.99         7.86         0.76         6.25 
TCGA-24-1424 TCGA-24-1425 TCGA-24-1427 TCGA-24-1430 TCGA-24-1431 TCGA-24-1435 
        6.02         5.95         4.80        28.34        19.17        43.53 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
       72.92        12.46        45.14       105.99         9.11         3.42 
TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 
        1.18        22.19        26.96        57.37        64.27        56.58 
TCGA-24-1550 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1560 TCGA-24-1562 
       41.06        58.09        88.50        70.62        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
       47.70        25.87        10.26        17.23        90.15        88.34 
TCGA-24-1842 TCGA-24-1846 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1924 
        8.32         4.37         5.75         5.49         9.80        30.21 
TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2023 TCGA-24-2024 
       16.41        11.05        81.11         4.87        44.84        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 
       34.82       109.68        14.43        53.95        28.18        64.01 
TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2262 TCGA-24-2271 TCGA-24-2280 
       44.48        57.07        36.16         0.36        31.63        70.45 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 
       44.58         0.82        67.36        36.23        16.64        55.86 
TCGA-24-2298 TCGA-25-1313 TCGA-25-1315 TCGA-25-1316 TCGA-25-1322 TCGA-25-1625 
       53.26        26.93        51.06        37.02         2.99        18.02 
TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 
       15.78         0.36        20.58         7.86         0.30        56.94 
TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 
       60.59        35.54        51.22        14.93        24.99        18.05 
TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 
       85.05        13.02        49.05         1.02        38.04         3.02 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 
       12.00        45.01        19.99        42.02         2.96        29.00 
TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 
       30.97        26.96        78.87        44.71        47.18       101.75 
TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1699 TCGA-29-1702 TCGA-29-1703 
       38.53        33.70        31.17         0.53        18.64        59.67 
TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 
       18.25        41.95        29.23        34.62        17.00        85.68 
TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 
       66.77        62.93        39.09        31.23        22.98        22.52 
TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 
       17.29        11.84        12.30        14.93         8.35         7.20 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 
        5.36        34.62        86.17        65.00        62.47        45.11 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2436 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 
        4.87        42.25         9.76        36.26         2.47        15.68 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 
        0.26        48.07        44.91        34.78         6.08        36.62 
TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 
        1.18        57.57        24.26        30.05        48.79        45.57 
TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 
       30.18        18.77        22.45         6.71        42.51        44.09 
TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 
        2.17        28.73        29.06        21.53        22.85        22.55 
TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 
        8.55        30.05        25.74        24.23        24.69        35.05 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       33.01        29.49        29.79        25.91        25.08        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 
       21.60         2.24        20.98        18.31        20.52        14.17 
TCGA-36-2549 TCGA-36-2551 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 
        6.05        16.14        14.30         9.07         9.44         7.56 
TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 
        7.46         7.63         1.48        24.03        11.38        21.14 
TCGA-57-1585 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2349 TCGA-59-2350 
        1.74        28.96        25.05        25.02        80.12        22.32 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 
        9.40        34.39         2.14         5.39        44.78        11.11 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 TCGA-61-1734 
       20.94        31.40        18.54        27.88        31.76        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1743 TCGA-61-1895 
       48.79        44.84        35.80         2.43        43.69         1.41 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1906 TCGA-61-1907 
        8.42         5.79        11.41        13.02        34.13        31.30 
TCGA-61-1910 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1919 
       37.02        48.92        56.58        67.73        43.43        38.17 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 
        1.97         5.52        14.50        17.98         3.98        30.61 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       30.64         1.18        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 
       51.72        71.74        61.64        58.39        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 
        6.48        76.83        20.68        44.52       125.72        22.22 
TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        6.35        31.07         8.58 

      19Q GAIN CNV 19Q GAIN WILD-TYPE 
              0.53               0.26 
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
            180.16             129.96 
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
             19.10              29.23 
[1] "0.5 - 180.2 (19.1)" "0.3 - 130.0 (29.2)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "19Q GAIN CNV"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2614 
"19Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "19Q GAIN CNV"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2614 
"19Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "19Q GAIN CNV"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2614 
"19Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D35V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  19Q GAIN CNV             0    90                0
  19Q GAIN WILD-TYPE       2   458                2
D35V3, multiclass
                  clus
vv                 19Q GAIN CNV 19Q GAIN WILD-TYPE
  OMENTUM                     0                  2
  OVARY                      90                458
  PERITONEUM OVARY            0                  2
D35V4, continuous
                    vv
clus                 I+II III  IV
  19Q GAIN CNV          1  20   3
  19Q GAIN WILD-TYPE    3 113  31
D35V5, multiclass
      clus
vv     19Q GAIN CNV 19Q GAIN WILD-TYPE
  I+II            1                  3
  III            20                113
  IV              3                 31
D35V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN CNV          1   90
  19Q GAIN WILD-TYPE    2  469
     clus
vv    19Q GAIN CNV 19Q GAIN WILD-TYPE
  NO             1                  2
  YES           90                469
                    vv
clus                 R0 R1 R2
  19Q GAIN CNV        3  2  0
  19Q GAIN WILD-TYPE 11 24  2
D35V7, multiclass
    clus
vv   19Q GAIN CNV 19Q GAIN WILD-TYPE
  R0            3                 11
  R1            2                 24
  R2            0                  2

Clustering(36) Variable = 20p gain
D36V1, survival
                    sevent
clus2                  0   1
  20P GAIN CNV        97 130
  20P GAIN WILD-TYPE 166 154
      20P GAIN CNV 20P GAIN WILD-TYPE 
               227                320 
      20P GAIN CNV 20P GAIN WILD-TYPE 
               130                154 
$`20P GAIN CNV`
TCGA-04-1332 TCGA-04-1337 TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 
       41.00         2.01        18.51        11.87        65.49        63.06 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1364 TCGA-04-1514 
       21.57        63.98        65.46        49.28        33.67        56.55 
TCGA-04-1517 TCGA-04-1542 TCGA-04-1646 TCGA-04-1649 TCGA-04-1655 TCGA-09-0366 
       19.99        84.20        27.88        64.64        45.34        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1665 TCGA-09-1668 
       17.95        35.54         9.96        38.43        41.59        55.36 
TCGA-09-1674 TCGA-09-2043 TCGA-09-2051 TCGA-09-2053 TCGA-10-0933 TCGA-10-0935 
        8.55         6.15        63.09        39.75        11.70        35.41 
TCGA-10-0936 TCGA-10-0938 TCGA-13-0717 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
       35.80        19.86        24.59        39.58         2.73        12.39 
TCGA-13-0727 TCGA-13-0751 TCGA-13-0757 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 
       15.19        55.17        11.18        32.25        31.04        21.40 
TCGA-13-0794 TCGA-13-0800 TCGA-13-0802 TCGA-13-0803 TCGA-13-0884 TCGA-13-0885 
       30.35         8.12         8.19        43.82       107.18        91.40 
TCGA-13-0888 TCGA-13-0899 TCGA-13-0904 TCGA-13-0913 TCGA-13-0923 TCGA-13-1407 
       70.39        56.15        48.33        29.98         6.41         6.05 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1412 TCGA-13-1481 TCGA-13-1484 TCGA-13-1485 
        5.92         6.84         5.33        87.06        98.04        20.68 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1492 TCGA-13-1497 TCGA-13-1499 TCGA-13-1504 
       22.39        70.82        73.55        54.31        38.37        16.57 
TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-2057 TCGA-13-2061 TCGA-20-0990 
        4.21         4.41         4.77        14.24        10.78        25.94 
TCGA-20-0991 TCGA-20-1685 TCGA-23-1021 TCGA-23-1024 TCGA-23-1031 TCGA-23-1032 
       26.20        16.67        47.54        15.39        18.87         2.24 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1114 TCGA-23-1121 TCGA-23-1122 
       51.35        54.51         3.22        68.68         6.38        39.09 
TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2084 TCGA-23-2643 TCGA-23-2645 
       33.47        58.13         0.53        49.84         4.70         4.50 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1430 TCGA-24-1431 TCGA-24-1436 TCGA-24-1464 
        6.25         6.02        28.34        19.17         8.55        12.46 
TCGA-24-1466 TCGA-24-1469 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
       45.14         9.11        22.19        26.96        57.37        64.27 
TCGA-24-1548 TCGA-24-1553 TCGA-24-1556 TCGA-24-1557 TCGA-24-1564 TCGA-24-1604 
       16.21        58.09        70.62        39.88        25.87        88.34 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1847 TCGA-24-1850 TCGA-24-1928 TCGA-24-1930 
        3.72         3.81        11.28         5.49        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2026 TCGA-24-2027 TCGA-24-2033 TCGA-24-2260 
        4.87       151.99        34.82       109.68        18.48        36.16 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2295 
       70.45        44.58         0.82        67.36        36.23        33.11 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 
        1.02        26.93         1.02        34.98        65.00        36.95 
TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 
       33.96         2.99        12.00         2.96        18.58        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 
        0.36        20.58        60.59        35.54        14.93        24.99 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2396 TCGA-25-2398 TCGA-25-2400 TCGA-25-2404 
       18.05        85.05         3.02        45.01        42.02        29.00 
TCGA-25-2408 TCGA-29-1688 TCGA-29-1691 TCGA-29-1695 TCGA-29-1698 TCGA-29-1699 
       30.97        78.87        47.18         0.79        68.28         0.53 
TCGA-29-1701 TCGA-29-1703 TCGA-29-1710 TCGA-29-1761 TCGA-29-1763 TCGA-29-1766 
       16.90        59.67        29.23        17.00        66.77        39.09 
TCGA-29-1770 TCGA-29-1775 TCGA-29-1778 TCGA-29-1783 TCGA-29-1784 TCGA-29-2414 
       24.36        12.36        14.93         7.20         5.36        86.17 
TCGA-29-2425 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-30-1714 TCGA-30-1718 
       65.00        45.11         4.87        42.25        38.07        51.91 
TCGA-30-1856 TCGA-30-1859 TCGA-30-1861 TCGA-30-1862 TCGA-30-1867 TCGA-30-1892 
       15.68        48.07        34.78         6.08         1.18        48.79 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1571 
       18.77        22.45         2.17        28.73        29.06        22.85 
TCGA-36-1575 TCGA-36-1576 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 
        8.55        30.05        20.52        14.17        16.14        11.47 
TCGA-42-2593 TCGA-57-1583 TCGA-57-1585 TCGA-57-1586 TCGA-59-2351 TCGA-59-2352 
        1.48        11.38         1.74        22.32       116.12         9.40 
TCGA-59-2363 TCGA-59-2372 TCGA-61-1722 TCGA-61-1727 TCGA-61-1730 TCGA-61-1733 
        5.39        44.78         8.05        18.54         4.34        31.76 
TCGA-61-1743 TCGA-61-1899 TCGA-61-1900 TCGA-61-1903 TCGA-61-1904 TCGA-61-1907 
       43.69         8.42         5.79        13.02         9.07        31.30 
TCGA-61-1911 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-2003 
       42.48        56.58        67.73        43.43        15.75         3.98 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
       30.61        39.85        30.64        60.62        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2113 TCGA-61-2612 TCGA-61-2614 
        6.48        76.83        22.22         6.35         8.58 

$`20P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1348 TCGA-04-1361 
       40.24         1.81        49.15        46.62        48.76        32.52 
TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1516 TCGA-04-1525 
       44.32        76.54        71.47        82.36        41.59        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 TCGA-04-1651 
      119.08        29.06        55.40        48.89        28.64        36.23 
TCGA-04-1652 TCGA-04-1654 TCGA-09-0364 TCGA-09-0365 TCGA-09-1662 TCGA-09-1664 
       31.86        47.70        29.16         9.47        89.33        74.89 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       57.57        61.87        30.48        17.98         5.85         3.02 
TCGA-09-1675 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
       97.55         6.12        35.15         4.50       112.37        71.11 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       20.91        26.93        12.46        54.31        25.91        81.47 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0934 TCGA-10-0937 TCGA-13-0714 
       18.48        33.24        32.28         3.88        15.12         6.21 
TCGA-13-0720 TCGA-13-0726 TCGA-13-0730 TCGA-13-0755 TCGA-13-0758 TCGA-13-0760 
       44.55        31.07        17.79         2.47        11.38        11.54 
TCGA-13-0761 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0795 
       34.06         8.42        38.93        36.72        28.70        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.71         7.79         8.28        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
       68.91        74.27        66.64        61.81        67.99        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0905 
       43.36        57.47        57.07        19.36        47.38        47.84 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0916 
       44.94        44.84        37.08        27.68        34.06        21.14 
TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 
       14.89        13.81         4.64         6.08        10.88         6.61 
TCGA-13-1405 TCGA-13-1410 TCGA-13-1411 TCGA-13-1477 TCGA-13-1482 TCGA-13-1483 
        7.36         4.70         4.21        54.61        61.71        29.39 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1498 
       82.88        52.44        38.17        49.22         4.24        37.61 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
       13.97        32.84         4.14         2.56         3.88         3.09 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0996 
       12.23         8.58         8.75         6.28        23.05        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1686 TCGA-20-1687 TCGA-23-1022 
       27.48        25.38        19.07         2.93         2.66        42.51 
TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 
       40.54        26.83        31.73        49.41         8.81        29.10 
TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       31.20         4.57        33.30        86.01       129.96         4.27 
TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2641 
       24.95       115.89        87.48        91.66        77.00         2.76 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       22.32        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1425 TCGA-24-1426 
        7.82         7.99         7.86         0.76         5.95         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 TCGA-24-1467 
        4.80        17.36        18.67        43.53        72.92       105.99 
TCGA-24-1470 TCGA-24-1471 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
        3.42         1.18        56.58        41.06        51.91        41.39 
TCGA-24-1555 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1565 
       88.50        19.53        44.09        45.50        47.70        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       17.23        90.15        48.33        38.24         8.32         3.48 
TCGA-24-1846 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
        4.37         5.75         9.80        22.65        30.21        16.41 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 
       44.84        58.16        14.43        53.95        28.18        64.01 
TCGA-24-2038 TCGA-24-2254 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       44.48        57.07         0.79         0.36        47.54        31.63 
TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       16.64        55.86        53.26        31.99        51.06        37.02 
TCGA-25-1625 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1635 TCGA-25-2042 
       18.02         7.86         0.30        56.94        51.22        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2397 TCGA-25-2399 TCGA-25-2401 
       49.05         1.02        38.04        12.00        19.99         2.96 
TCGA-25-2409 TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 
       26.96        44.71       101.75        38.53        33.70        31.17 
TCGA-29-1702 TCGA-29-1705 TCGA-29-1707 TCGA-29-1711 TCGA-29-1762 TCGA-29-1764 
       18.64        18.25        41.95        34.62        85.68        62.93 
TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 
       31.23        22.98        22.52        17.29        11.84        12.30 
TCGA-29-1781 TCGA-29-1785 TCGA-29-2427 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 
        8.35        34.62        62.47        11.84        11.47         9.76 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1857 TCGA-30-1860 TCGA-30-1866 TCGA-30-1880 
       36.26         2.47         0.26        44.91        36.62        57.57 
TCGA-30-1887 TCGA-30-1891 TCGA-31-1944 TCGA-31-1946 TCGA-31-1953 TCGA-31-1955 
       24.26        30.05        45.57        30.18         6.71        42.51 
TCGA-31-1956 TCGA-36-1570 TCGA-36-1574 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
       44.09        21.53        22.55        25.74        27.85        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       24.69        35.05        33.01        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.08        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2549 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
        6.05        14.30         9.07         9.44         7.56         7.46 
TCGA-42-2591 TCGA-57-1582 TCGA-57-1584 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 
        7.63        24.03        21.14        28.96        25.05        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2354 TCGA-59-2355 TCGA-61-1721 
      180.16        80.12        22.32        34.39         2.14        11.11 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1728 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       20.94        31.40        27.88        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1895 TCGA-61-1901 TCGA-61-1906 
       35.80         2.43        33.67         1.41        11.41        34.13 
TCGA-61-1910 TCGA-61-1913 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       37.02        48.92        38.17         1.97         5.52        14.50 
TCGA-61-2002 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       17.98         1.18        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2109 TCGA-61-2110 
       51.72        71.74        61.64        58.39        20.68        44.52 
TCGA-61-2111 TCGA-61-2613 
      125.72        31.07 

      20P GAIN CNV 20P GAIN WILD-TYPE 
              0.36               0.26 
      20P GAIN CNV 20P GAIN WILD-TYPE 
            151.99             180.16 
      20P GAIN CNV 20P GAIN WILD-TYPE 
             26.20              28.83 
[1] "0.4 - 152.0 (26.2)" "0.3 - 180.2 (28.8)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-61-2614 
      "20P GAIN CNV" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-61-2614 
      "20P GAIN CNV" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-61-2614 
      "20P GAIN CNV" 
[1] "hr=" "1.2"
D36V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  20P GAIN CNV             1   227                1
  20P GAIN WILD-TYPE       1   321                1
D36V3, multiclass
                  clus
vv                 20P GAIN CNV 20P GAIN WILD-TYPE
  OMENTUM                     1                  1
  OVARY                     227                321
  PERITONEUM OVARY            1                  1
D36V4, continuous
                    vv
clus                 I+II III IV
  20P GAIN CNV          2  49 15
  20P GAIN WILD-TYPE    2  84 19
D36V5, multiclass
      clus
vv     20P GAIN CNV 20P GAIN WILD-TYPE
  I+II            2                  2
  III            49                 84
  IV             15                 19
D36V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN CNV          2  231
  20P GAIN WILD-TYPE    1  328
     clus
vv    20P GAIN CNV 20P GAIN WILD-TYPE
  NO             2                  1
  YES          231                328
                    vv
clus                 R0 R1 R2
  20P GAIN CNV        5  9  1
  20P GAIN WILD-TYPE  9 17  1
D36V7, multiclass
    clus
vv   20P GAIN CNV 20P GAIN WILD-TYPE
  R0            5                  9
  R1            9                 17
  R2            1                  1

Clustering(37) Variable = 20q gain
D37V1, survival
                    sevent
clus2                  0   1
  20Q GAIN CNV       121 144
  20Q GAIN WILD-TYPE 142 140
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
               265                282 
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
               144                140 
$`20Q GAIN CNV`
TCGA-04-1332 TCGA-04-1337 TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 
       41.00         2.01        18.51        11.87        65.49        63.06 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1364 TCGA-04-1371 
       21.57        63.98        65.46        49.28        33.67        82.36 
TCGA-04-1514 TCGA-04-1517 TCGA-04-1525 TCGA-04-1542 TCGA-04-1646 TCGA-04-1649 
       56.55        19.99        38.37        84.20        27.88        64.64 
TCGA-04-1652 TCGA-04-1655 TCGA-09-0364 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 
       31.86        45.34        29.16        17.95        35.54         9.96 
TCGA-09-1661 TCGA-09-1665 TCGA-09-1668 TCGA-09-1669 TCGA-09-1674 TCGA-09-2051 
       38.43        41.59        55.36        30.48         8.55        63.09 
TCGA-09-2053 TCGA-10-0933 TCGA-10-0935 TCGA-10-0936 TCGA-10-0938 TCGA-13-0717 
       39.75        11.70        35.41        35.80        19.86        24.59 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 
       39.58         2.73        12.39        15.19        17.79        55.17 
TCGA-13-0757 TCGA-13-0762 TCGA-13-0766 TCGA-13-0794 TCGA-13-0795 TCGA-13-0800 
       11.18        32.25        21.40        30.35        19.56         8.12 
TCGA-13-0802 TCGA-13-0803 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0888 
        8.19        43.82       107.18        91.40        74.27        70.39 
TCGA-13-0893 TCGA-13-0899 TCGA-13-0901 TCGA-13-0905 TCGA-13-0906 TCGA-13-0911 
       43.36        56.15        19.36        47.84        44.94        27.68 
TCGA-13-0913 TCGA-13-0923 TCGA-13-1403 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 
       29.98         6.41        10.88         6.05         5.92         6.84 
TCGA-13-1410 TCGA-13-1412 TCGA-13-1481 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 
        4.70         5.33        87.06        98.04        20.68        22.39 
TCGA-13-1492 TCGA-13-1499 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       73.55        38.37        32.84        16.57         4.21         4.41 
TCGA-13-1507 TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 TCGA-20-0990 TCGA-20-0991 
        4.77        14.24         8.58        10.78        25.94        26.20 
TCGA-20-1685 TCGA-23-1021 TCGA-23-1022 TCGA-23-1024 TCGA-23-1031 TCGA-23-1032 
       16.67        47.54        42.51        15.39        18.87         2.24 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 
       51.35        54.51         3.22        68.68         4.57        33.30 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2079 
        6.38        39.09        33.47        58.13         0.53        91.66 
TCGA-23-2084 TCGA-23-2643 TCGA-23-2645 TCGA-24-0982 TCGA-24-1103 TCGA-24-1417 
       49.84         4.70         4.50        22.32        54.08         7.82 
TCGA-24-1418 TCGA-24-1423 TCGA-24-1424 TCGA-24-1426 TCGA-24-1427 TCGA-24-1431 
        7.99         6.25         6.02         5.36         4.80        19.17 
TCGA-24-1434 TCGA-24-1436 TCGA-24-1464 TCGA-24-1466 TCGA-24-1469 TCGA-24-1474 
       18.67         8.55        12.46        45.14         9.11        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1553 TCGA-24-1556 
       26.96        57.37        64.27        16.21        58.09        70.62 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1604 TCGA-24-1844 TCGA-24-1845 TCGA-24-1847 
       39.88        19.53        88.34         3.72         3.81        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1924 TCGA-24-1928 TCGA-24-1930 
        5.75         5.49         9.80        30.21        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2026 TCGA-24-2027 TCGA-24-2033 TCGA-24-2260 
        4.87       151.99        34.82       109.68        18.48        36.16 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2295 
       70.45        44.58         0.82        67.36        36.23        33.11 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 
        1.02        26.93         1.02        34.98        65.00        36.95 
TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 
       33.96         2.99        12.00         2.96        18.58        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 
        0.36        20.58         0.30        60.59        35.54        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2396 TCGA-25-2398 TCGA-25-2400 
       24.99        18.05        85.05         3.02        45.01        42.02 
TCGA-25-2404 TCGA-25-2408 TCGA-29-1688 TCGA-29-1691 TCGA-29-1695 TCGA-29-1698 
       29.00        30.97        78.87        47.18         0.79        68.28 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
        0.53        16.90        18.64        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1761 TCGA-29-1763 TCGA-29-1766 TCGA-29-1770 TCGA-29-1774 
       29.23        17.00        66.77        39.09        24.36        17.29 
TCGA-29-1775 TCGA-29-1778 TCGA-29-1783 TCGA-29-1784 TCGA-29-2414 TCGA-29-2425 
       12.36        14.93         7.20         5.36        86.17        65.00 
TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
       45.11         4.87        42.25         9.76        38.07        51.91 
TCGA-30-1856 TCGA-30-1859 TCGA-30-1861 TCGA-30-1862 TCGA-30-1867 TCGA-30-1887 
       15.68        48.07        34.78         6.08         1.18        24.26 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1950 TCGA-31-1951 TCGA-31-1959 TCGA-36-1569 
       48.79        45.57        18.77        22.45         2.17        29.06 
TCGA-36-1571 TCGA-36-1575 TCGA-36-1576 TCGA-36-1581 TCGA-36-2534 TCGA-36-2547 
       22.85         8.55        30.05        24.69        29.79        20.52 
TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 
       14.17        16.14        11.47         7.63         1.48        24.03 
TCGA-57-1583 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 
       11.38         1.74        22.32        28.96        25.05        25.02 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2372 TCGA-61-1722 TCGA-61-1727 TCGA-61-1728 
      116.12         9.40        44.78         8.05        18.54        27.88 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1741 TCGA-61-1743 TCGA-61-1899 TCGA-61-1900 
        4.34        31.76        33.67        43.69         8.42         5.79 
TCGA-61-1903 TCGA-61-1904 TCGA-61-1907 TCGA-61-1911 TCGA-61-1914 TCGA-61-1915 
       13.02         9.07        31.30        42.48        56.58        67.73 
TCGA-61-1917 TCGA-61-1918 TCGA-61-2003 TCGA-61-2009 TCGA-61-2012 TCGA-61-2097 
       43.43        15.75         3.98        39.85        30.64        60.62 
TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2113 TCGA-61-2612 
       65.49        55.50         6.48        76.83        22.22         6.35 
TCGA-61-2614 
        8.58 

$`20Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1348 TCGA-04-1361 
       40.24         1.81        49.15        46.62        48.76        32.52 
TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1516 TCGA-04-1530 TCGA-04-1536 
       44.32        76.54        71.47        41.59       119.08        29.06 
TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 TCGA-04-1651 TCGA-04-1654 TCGA-09-0365 
       55.40        48.89        28.64        36.23        47.70         9.47 
TCGA-09-0366 TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 TCGA-09-1667 TCGA-09-1670 
       57.73        89.33        74.89        57.57        61.87        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 
        5.85         3.02        97.55         6.15         6.12        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 
        4.50       112.37        71.11        20.91        26.93        12.46 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 
       54.31        25.91        81.47        18.48        33.24        32.28 
TCGA-10-0934 TCGA-10-0937 TCGA-13-0714 TCGA-13-0720 TCGA-13-0726 TCGA-13-0755 
        3.88        15.12         6.21        44.55        31.07         2.47 
TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 TCGA-13-0768 TCGA-13-0791 
       11.38        11.54        34.06        31.04         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 TCGA-13-0804 
       36.72        28.70         8.71         7.79         8.28        35.28 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 
       35.28        13.61        68.91        66.64        61.81        67.99 
TCGA-13-0891 TCGA-13-0897 TCGA-13-0900 TCGA-13-0903 TCGA-13-0904 TCGA-13-0908 
       69.01        57.47        57.07        47.38        48.33        44.84 
TCGA-13-0910 TCGA-13-0912 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       37.08        34.06        21.14        14.89        13.81         4.64 
TCGA-13-0924 TCGA-13-1404 TCGA-13-1405 TCGA-13-1411 TCGA-13-1477 TCGA-13-1482 
        6.08         6.61         7.36         4.21        54.61        61.71 
TCGA-13-1483 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 
       29.39        70.82        82.88        52.44        38.17        49.22 
TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1500 TCGA-13-1509 TCGA-13-1510 
        4.24        54.31        37.61        13.97         4.14         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 
        3.88         3.09        12.23         8.75         6.28        23.05 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1686 TCGA-20-1687 
       72.20        27.48        25.38        19.07         2.93         2.66 
TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 
       40.54        26.83        31.73        49.41         8.81        29.10 
TCGA-23-1113 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-2072 TCGA-23-2077 
       31.20        86.01       129.96         4.27        24.95       115.89 
TCGA-23-2078 TCGA-23-2081 TCGA-23-2641 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
       87.48        77.00         2.76         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
       21.80        41.56         7.66        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1419 TCGA-24-1422 TCGA-24-1425 TCGA-24-1428 TCGA-24-1430 
        6.38         7.86         0.76         5.95        17.36        28.34 
TCGA-24-1435 TCGA-24-1463 TCGA-24-1467 TCGA-24-1470 TCGA-24-1471 TCGA-24-1549 
       43.53        72.92       105.99         3.42         1.18        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1555 TCGA-24-1560 TCGA-24-1562 
       41.06        51.91        41.39        88.50        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 
       47.70        25.87        10.26        17.23        90.15        48.33 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1846 TCGA-24-1923 TCGA-24-1927 
       38.24         8.32         3.48         4.37        22.65        16.41 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 
       44.84        58.16        14.43        53.95        28.18        64.01 
TCGA-24-2038 TCGA-24-2254 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       44.48        57.07         0.79         0.36        47.54        31.63 
TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       16.64        55.86        53.26        31.99        51.06        37.02 
TCGA-25-1625 TCGA-25-1630 TCGA-25-1632 TCGA-25-1635 TCGA-25-2042 TCGA-25-2391 
       18.02         7.86        56.94        51.22        13.02        49.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2397 TCGA-25-2399 TCGA-25-2401 TCGA-25-2409 
        1.02        38.04        12.00        19.99         2.96        26.96 
TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1711 
       44.71       101.75        38.53        33.70        31.17        34.62 
TCGA-29-1762 TCGA-29-1764 TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 TCGA-29-1776 
       85.68        62.93        31.23        22.98        22.52        11.84 
TCGA-29-1777 TCGA-29-1781 TCGA-29-1785 TCGA-29-2427 TCGA-29-2432 TCGA-29-2434 
       12.30         8.35        34.62        62.47        11.84        11.47 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1857 TCGA-30-1860 TCGA-30-1866 TCGA-30-1880 
       36.26         2.47         0.26        44.91        36.62        57.57 
TCGA-30-1891 TCGA-31-1946 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 
       30.05        30.18         6.71        42.51        44.09        28.73 
TCGA-36-1570 TCGA-36-1574 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-2529 
       21.53        22.55        25.74        27.85        24.23        35.05 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 
       33.01        29.49        25.91        25.08        23.80        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2549 TCGA-42-2582 TCGA-42-2587 
        2.24        20.98        18.31         6.05        14.30         9.07 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-57-1584 TCGA-59-2348 TCGA-59-2349 
        9.44         7.56         7.46        21.14       180.16        80.12 
TCGA-59-2350 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 TCGA-61-1724 
       22.32        34.39         2.14         5.39        11.11        20.94 
TCGA-61-1725 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
       31.40        28.47        48.79        44.84        35.80         2.43 
TCGA-61-1895 TCGA-61-1901 TCGA-61-1906 TCGA-61-1910 TCGA-61-1913 TCGA-61-1919 
        1.41        11.41        34.13        37.02        48.92        38.17 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 TCGA-61-2016 
        1.97         5.52        14.50        17.98        30.61         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
       45.96        45.40         4.80         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2613 
       61.64        58.39        20.68        44.52       125.72        31.07 

      20Q GAIN CNV 20Q GAIN WILD-TYPE 
              0.30               0.26 
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
            151.99             180.16 
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
            24.690             30.115 
[1] "0.3 - 152.0 (24.7)" "0.3 - 180.2 (30.1)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-61-2614 
      "20Q GAIN CNV" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-61-2614 
      "20Q GAIN CNV" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-61-2614 
      "20Q GAIN CNV" 
[1] "hr=" "1.2"
D37V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  20Q GAIN CNV             1   265                1
  20Q GAIN WILD-TYPE       1   283                1
D37V3, multiclass
                  clus
vv                 20Q GAIN CNV 20Q GAIN WILD-TYPE
  OMENTUM                     1                  1
  OVARY                     265                283
  PERITONEUM OVARY            1                  1
D37V4, continuous
                    vv
clus                 I+II III IV
  20Q GAIN CNV          3  62 18
  20Q GAIN WILD-TYPE    1  71 16
D37V5, multiclass
      clus
vv     20Q GAIN CNV 20Q GAIN WILD-TYPE
  I+II            3                  1
  III            62                 71
  IV             18                 16
D37V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN CNV          2  270
  20Q GAIN WILD-TYPE    1  289
     clus
vv    20Q GAIN CNV 20Q GAIN WILD-TYPE
  NO             2                  1
  YES          270                289
                    vv
clus                 R0 R1 R2
  20Q GAIN CNV        6 11  1
  20Q GAIN WILD-TYPE  8 15  1
D37V7, multiclass
    clus
vv   20Q GAIN CNV 20Q GAIN WILD-TYPE
  R0            6                  8
  R1           11                 15
  R2            1                  1

Clustering(38) Variable = 21q gain
D38V1, survival
                    sevent
clus2                  0   1
  21Q GAIN CNV        33  34
  21Q GAIN WILD-TYPE 230 250
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                67                480 
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                34                250 
$`21Q GAIN CNV`
TCGA-04-1332 TCGA-04-1342 TCGA-04-1343 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 
       41.00        18.51        11.87        82.36        56.55        41.59 
TCGA-04-1644 TCGA-09-0365 TCGA-09-1670 TCGA-09-2043 TCGA-10-0936 TCGA-13-0724 
       48.89         9.47        17.98         6.15        35.80         2.73 
TCGA-13-0726 TCGA-13-0762 TCGA-13-0795 TCGA-13-0904 TCGA-13-1408 TCGA-13-1410 
       31.07        32.25        19.56        48.33         5.92         4.70 
TCGA-13-1496 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-2059 TCGA-20-0990 
        4.24        16.57         4.21         4.41        12.23        25.94 
TCGA-20-0991 TCGA-20-1683 TCGA-23-1116 TCGA-23-1121 TCGA-23-2643 TCGA-24-0979 
       26.20        25.38         4.57         6.38         4.70        41.56 
TCGA-24-1424 TCGA-24-1436 TCGA-24-1558 TCGA-24-1842 TCGA-24-1843 TCGA-24-1847 
        6.02         8.55        19.53         8.32         3.48        11.28 
TCGA-24-2019 TCGA-24-2260 TCGA-24-2295 TCGA-25-1312 TCGA-25-1319 TCGA-25-1323 
        4.87        36.16        33.11         1.02        65.00        12.00 
TCGA-25-1329 TCGA-25-1628 TCGA-25-1877 TCGA-25-2393 TCGA-25-2401 TCGA-29-1701 
        2.96        20.58        18.05        38.04         2.96        16.90 
TCGA-29-1707 TCGA-29-1762 TCGA-29-1778 TCGA-29-2428 TCGA-30-1861 TCGA-30-1862 
       41.95        85.68        14.93        45.11        34.78         6.08 
TCGA-30-1867 TCGA-31-1959 TCGA-36-1571 TCGA-36-1578 TCGA-36-2529 TCGA-36-2542 
        1.18         2.17        22.85        27.85        35.05        21.60 
TCGA-57-1585 TCGA-61-1915 TCGA-61-2003 TCGA-61-2101 TCGA-61-2102 TCGA-61-2612 
        1.74        67.73         3.98        55.50         6.48         6.35 
TCGA-61-2614 
        8.58 

$`21Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1346 
       40.24         1.81        49.15         2.01        46.62        65.49 
TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 
       63.06        48.76        21.57        63.98        65.46        49.28 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1517 
       32.52        44.32        33.67        76.54        71.47        19.99 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1646 
       38.37       119.08        29.06        84.20        55.40        27.88 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 
       28.64        64.64        36.23        31.86        47.70        45.34 
TCGA-09-0364 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
       29.16        57.73        17.95        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       89.33        74.89        41.59        57.57        61.87        55.36 
TCGA-09-1669 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2044 
       30.48         5.85         3.02         8.55        97.55         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 
       35.15         4.50       112.37        71.11        63.09        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       20.91        26.93        12.46        54.31        25.91        81.47 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 
       18.48        33.24        32.28        11.70         3.88        35.41 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 
       15.12        19.86         6.21        24.59        44.55        39.58 
TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 
       12.39        15.19        17.79        55.17         2.47        11.18 
TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.38        11.54        34.06        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 
       38.93        36.72        28.70        30.35         8.71         7.79 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        8.12         8.28         8.19        43.82        35.28        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       13.61        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 
       70.39        61.81        67.99        69.01        43.36        57.47 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0905 TCGA-13-0906 
       56.15        57.07        19.36        47.38        47.84        44.94 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       44.84        37.08        27.68        34.06        29.98        21.14 
TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       14.89        13.81         4.64         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1409 TCGA-13-1411 TCGA-13-1412 
        6.61         7.36         6.05         6.84         4.21         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
       54.61        87.06        61.71        29.39        98.04        20.68 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 
       22.39        70.82        82.88        52.44        73.55        38.17 
TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 
       49.22        54.31        37.61        38.37        13.97        32.84 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 
        4.77         4.14         2.56         3.88         3.09        14.24 
TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0996 
        8.58        10.78         8.75         6.28        23.05        72.20 
TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
       27.48        19.07        16.67         2.93         2.66        47.54 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       42.51        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
        3.22        31.20        68.68        33.30        86.01       129.96 
TCGA-23-1120 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 
        4.27        39.09        33.47        58.13         0.53        24.95 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
      115.89        87.48        91.66        77.00        49.84         2.76 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0980 
        4.50         7.63        19.63        11.64        21.80         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       22.32        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 
        7.82         7.99         7.86         0.76         6.25         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 
        5.36         4.80        17.36        28.34        19.17        18.67 
TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 
       43.53        72.92        12.46        45.14       105.99         9.11 
TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
        3.42         1.18        22.19        26.96        57.37        64.27 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 
       16.21        56.58        41.06        51.91        41.39        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 
       88.50        70.62        39.88        44.09        45.50        47.70 
TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 
       25.87        10.26        17.23        90.15        88.34        48.33 
TCGA-24-1616 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1849 TCGA-24-1850 
       38.24         3.72         3.81         4.37         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        9.80        22.65        30.21        16.41        11.05        81.11 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 
      151.99        44.84        58.16        34.82       109.68        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
       53.95        18.48        28.18        64.01        44.48        57.07 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
        0.79         0.36        47.54        31.63        70.45        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 
        0.82        67.36        36.23        16.64        55.86        53.26 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 
       26.93        31.99        51.06        37.02         1.02        34.98 
TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
       36.95        33.96         2.99        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 
        0.36         7.86         0.30        56.94        60.59        35.54 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       51.22        14.93        24.99        85.05        13.02        49.05 
TCGA-25-2392 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
        1.02         3.02        12.00        45.01        19.99        42.02 
TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 
       29.00        30.97        26.96        78.87        44.71        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 
      101.75        38.53         0.79        33.70        31.17        68.28 
TCGA-29-1699 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1710 TCGA-29-1711 
        0.53        18.64        59.67        18.25        29.23        34.62 
TCGA-29-1761 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       17.00        66.77        62.93        39.09        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 
       24.36        22.52        17.29        12.36        11.84        12.30 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
        8.35         7.20         5.36        34.62        86.17        65.00 
TCGA-29-2427 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 
       62.47         4.87        42.25        11.84        11.47         9.76 
TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 
       38.07        51.91        36.26         2.47        15.68         0.26 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1866 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
       48.07        44.91        36.62        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 
       48.79        45.57        30.18        18.77        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1574 
       42.51        44.09        28.73        29.06        21.53        22.55 
TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 TCGA-36-2530 
        8.55        30.05        25.74        24.23        24.69        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2543 
       29.49        29.79        25.91        25.08        23.80         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 
       20.98        18.31        20.52        14.17         6.05        16.14 
TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       11.47        14.30         9.07         9.44         7.56         7.46 
TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1586 
        7.63         1.48        24.03        11.38        21.14        22.32 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 
       28.96        25.05        25.02       180.16        80.12        22.32 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
      116.12         9.40        34.39         2.14         5.39        44.78 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 
       11.11         8.05        20.94        31.40        18.54        27.88 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
        4.34        31.76        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 
        2.43        33.67        43.69         1.41         8.42         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
       11.41        13.02         9.07        34.13        31.30        37.02 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 
       42.48        48.92        56.58        43.43        15.75        38.17 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 TCGA-61-2009 
        1.97         5.52        14.50        17.98        30.61        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       30.64         1.18        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 
       51.72        71.74        61.64        58.39        60.62        65.49 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2613 
       76.83        20.68        44.52       125.72        22.22        31.07 

      21Q GAIN CNV 21Q GAIN WILD-TYPE 
              1.02               0.26 
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
             85.68             180.16 
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
             16.90              29.31 
[1] "1.0 - 85.7 (16.9)"  "0.3 - 180.2 (29.3)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "21Q GAIN CNV"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
      "21Q GAIN CNV"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV"       "21Q GAIN CNV" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV"       "21Q GAIN CNV" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV"       "21Q GAIN CNV" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "21Q GAIN CNV"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "21Q GAIN CNV"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-61-2614 
      "21Q GAIN CNV" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "21Q GAIN CNV"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
      "21Q GAIN CNV"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV"       "21Q GAIN CNV" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV"       "21Q GAIN CNV" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV"       "21Q GAIN CNV" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "21Q GAIN CNV"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "21Q GAIN CNV"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-61-2614 
      "21Q GAIN CNV" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "21Q GAIN CNV"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
      "21Q GAIN CNV"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV"       "21Q GAIN CNV" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"       "21Q GAIN CNV"       "21Q GAIN CNV" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV"       "21Q GAIN CNV" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
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      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "21Q GAIN CNV"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "21Q GAIN CNV"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-61-2614 
      "21Q GAIN CNV" 
[1] "hr=" "1.6"
D38V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  21Q GAIN CNV             0    66                1
  21Q GAIN WILD-TYPE       2   482                1
D38V3, multiclass
                  clus
vv                 21Q GAIN CNV 21Q GAIN WILD-TYPE
  OMENTUM                     0                  2
  OVARY                      66                482
  PERITONEUM OVARY            1                  1
D38V4, continuous
                    vv
clus                 I+II III  IV
  21Q GAIN CNV          1  14   6
  21Q GAIN WILD-TYPE    3 119  28
D38V5, multiclass
      clus
vv     21Q GAIN CNV 21Q GAIN WILD-TYPE
  I+II            1                  3
  III            14                119
  IV              6                 28
D38V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN CNV          0   70
  21Q GAIN WILD-TYPE    3  489
     clus
vv    21Q GAIN CNV 21Q GAIN WILD-TYPE
  NO             0                  3
  YES           70                489
                    vv
clus                 R0 R1 R2
  21Q GAIN CNV        1  6  0
  21Q GAIN WILD-TYPE 13 20  2
D38V7, multiclass
    clus
vv   21Q GAIN CNV 21Q GAIN WILD-TYPE
  R0            1                 13
  R1            6                 20
  R2            0                  2

Clustering(39) Variable = 22q gain
D39V1, survival
                    sevent
clus2                  0   1
  22Q GAIN CNV         4   5
  22Q GAIN WILD-TYPE 259 279
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                 9                538 
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                 5                279 
$`22Q GAIN CNV`
TCGA-13-0762 TCGA-24-1556 TCGA-24-1928 TCGA-25-1627 TCGA-29-1770 TCGA-29-2425 
       32.25        70.62        11.05         0.36        24.36        65.00 
TCGA-30-1861 TCGA-57-1585 TCGA-61-1904 
       34.78         1.74         9.07 

$`22Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       63.98        65.46        49.28        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 
       76.54        71.47        82.36        56.55        41.59        19.99 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 
       38.37       119.08        29.06        84.20        55.40        48.89 
TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 
       27.88        28.64        64.64        36.23        31.86        47.70 
TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 
       45.34        29.16         9.47        57.73        17.95        35.54 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 
        9.96        38.43        89.33        74.89        41.59        57.57 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       61.87        55.36        30.48        17.98         5.85         3.02 
TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 
        8.55        97.55         6.15         6.12        35.15         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 
      112.37        71.11        63.09        39.75        20.91        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
       12.46        54.31        25.91        81.47        18.48        33.24 
TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 
       32.28        11.70         3.88        35.41        35.80        15.12 
TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 
       19.86         6.21        24.59        44.55        39.58         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 
       12.39        31.07        15.19        17.79        55.17         2.47 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 TCGA-13-0766 
       11.18        11.38        11.54        34.06        31.04        21.40 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 
        8.42        38.93        36.72        28.70        30.35        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 
        8.71         7.79         8.12         8.28         8.19        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 
       35.28        35.28        13.61        68.91       107.18        91.40 
TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
       74.27        66.64        70.39        61.81        67.99        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 
       43.36        57.47        56.15        57.07        19.36        47.38 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       48.33        47.84        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       34.06        29.98        21.14        14.89        13.81         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
        6.41         6.08        10.88         6.61         7.36         6.05 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 
        5.92         6.84         4.70         4.21         5.33        54.61 
TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 
       87.06        61.71        29.39        98.04        20.68        22.39 
TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 
       70.82        82.88        52.44        73.55        38.17        49.22 
TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 
        4.24        54.31        37.61        38.37        13.97        32.84 
TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 
       16.57         4.21         4.41         4.77         4.14         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 
        3.88         3.09        14.24        12.23         8.58        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       27.48        25.38        19.07        16.67         2.93         2.66 
TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
       47.54        42.51        40.54        15.39        26.83        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 
       49.41         8.81        29.10        18.87         2.24        51.35 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 
       54.51         3.22        31.20        68.68         4.57        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 
       86.01       129.96         4.27         6.38        39.09        33.47 
TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 
       58.13         0.53        24.95       115.89        87.48        91.66 
TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 
       77.00        49.84         2.76         4.70         4.50         7.63 
TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 
       19.63        11.64        21.80        41.56         7.66        22.32 
TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 
       54.08        63.55        47.41         6.31         6.38         7.82 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 
        7.99         7.86         0.76         6.25         6.02         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 
        5.36         4.80        17.36        28.34        19.17        18.67 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 
       43.53         8.55        72.92        12.46        45.14       105.99 
TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 
        9.11         3.42         1.18        22.19        26.96        57.37 
TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
       64.27        16.21        56.58        41.06        51.91        41.39 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       58.09        88.50        39.88        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
       47.70        25.87        10.26        17.23        90.15        88.34 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 
       48.33        38.24         8.32         3.48         3.72         3.81 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
        4.37        11.28         5.75         5.49         9.80        22.65 
TCGA-24-1924 TCGA-24-1927 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 
       30.21        16.41        81.11         4.87       151.99        44.84 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 
       58.16        34.82       109.68        14.43        53.95        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 
       28.18        64.01        44.48        57.07        36.16         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
        0.36        47.54        31.63        70.45        44.58         0.82 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 
       67.36        36.23        16.64        33.11        55.86        53.26 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 
        1.02        26.93        31.99        51.06        37.02         1.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
       34.98        65.00        36.95        33.96         2.99        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1628 TCGA-25-1630 
        2.96        18.58        18.02        15.78        20.58         7.86 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 
        0.30        56.94        60.59        35.54        51.22        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       24.99        18.05        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
       38.04         3.02        12.00        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
        2.96        29.00        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 
       47.18       101.75        38.53         0.79        33.70        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 
       68.28         0.53        16.90        18.64        59.67        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 
       41.95        29.23        34.62        17.00        85.68        66.77 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 TCGA-29-1774 
       62.93        39.09        31.23        22.98        22.52        17.29 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 
       12.36        11.84        12.30        14.93         8.35         7.20 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
        5.36        34.62        86.17        62.47        45.11         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
       42.25        11.84        11.47         9.76        38.07        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 
       36.26         2.47        15.68         0.26        48.07        44.91 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
        6.08        36.62         1.18        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 
       48.79        45.57        30.18        18.77        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       42.51        44.09         2.17        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       22.85        22.55         8.55        30.05        25.74        27.85 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       24.23        24.69        35.05        33.01        29.49        29.79 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       25.91        25.08        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 
       18.31        20.52        14.17         6.05        16.14        11.47 
TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
       14.30         9.07         9.44         7.56         7.46         7.63 
TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1586 TCGA-57-1992 
        1.48        24.03        11.38        21.14        22.32        28.96 
TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 
       25.05        25.02       180.16        80.12        22.32       116.12 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 
        9.40        34.39         2.14         5.39        44.78        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 
        8.05        20.94        31.40        18.54        27.88         4.34 
TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
       31.76        28.47        48.79        44.84        35.80         2.43 
TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 
       33.67        43.69         1.41         8.42         5.79        11.41 
TCGA-61-1903 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
       13.02        34.13        31.30        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       56.58        67.73        43.43        15.75        38.17         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 
        5.52        14.50        17.98         3.98        30.61        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       30.64         1.18        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 
       51.72        71.74        61.64        58.39        60.62        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
       55.50         6.48        76.83        20.68        44.52       125.72 
TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       22.22         6.35        31.07         8.58 

      22Q GAIN CNV 22Q GAIN WILD-TYPE 
              0.36               0.26 
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
             70.62             180.16 
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
             24.36              28.26 
[1] "0.4 - 70.6 (24.4)"  "0.3 - 180.2 (28.3)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
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        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
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        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
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        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
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        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
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        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
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        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
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        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
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        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
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        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
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        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
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        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
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      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2614 
"22Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D39V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  22Q GAIN CNV             0     9                0
  22Q GAIN WILD-TYPE       2   539                2
D39V3, multiclass
                  clus
vv                 22Q GAIN CNV 22Q GAIN WILD-TYPE
  OMENTUM                     0                  2
  OVARY                       9                539
  PERITONEUM OVARY            0                  2
D39V4, continuous
[1] "Remove cluster labels:" "22Q GAIN CNV"          
clus
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                 1                 75 
        TCGA-04-1346         TCGA-04-1347         TCGA-04-1351 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-04-1356         TCGA-04-1367         TCGA-10-0925 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-10-0926         TCGA-13-0714         TCGA-13-0720 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0724         TCGA-13-0755         TCGA-13-0757 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0758         TCGA-13-0760         TCGA-13-0764 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0768         TCGA-13-0791         TCGA-13-0792 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0793         TCGA-13-0794         TCGA-13-0795 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0797         TCGA-13-0799         TCGA-13-0801 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0802         TCGA-13-0885         TCGA-13-0887 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0891 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0897         TCGA-13-0900         TCGA-13-0901 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0910         TCGA-13-0911 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0912         TCGA-13-0913         TCGA-13-0919 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1404         TCGA-13-1405         TCGA-13-1409 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1412         TCGA-13-1482 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1488         TCGA-13-1489         TCGA-13-1491 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1492         TCGA-13-1495         TCGA-13-1497 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1506 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1507         TCGA-13-1509         TCGA-13-1511 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1512         TCGA-13-2057         TCGA-13-2059 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-2060         TCGA-13-2061         TCGA-13-2071 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1614         TCGA-24-1930         TCGA-61-2101 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
                    vv
clus                 I+II III  IV
  22Q GAIN CNV          0   2   0
  22Q GAIN WILD-TYPE    4 131  34
D39V5, multiclass
[1] "Remove cluster labels:" "22Q GAIN CNV"          
clus
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                 2                169 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1654         TCGA-10-0925 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-10-0926         TCGA-10-0927         TCGA-10-0928 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-10-0930         TCGA-10-0931         TCGA-10-0933 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-10-0934         TCGA-10-0935         TCGA-10-0936 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-10-0937         TCGA-10-0938         TCGA-13-0807 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0883         TCGA-13-0885         TCGA-13-0886 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0887         TCGA-13-0888         TCGA-13-0889 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0890         TCGA-13-0891         TCGA-13-0897 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0903         TCGA-13-0904 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0910         TCGA-13-0911 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0912         TCGA-13-0913         TCGA-13-0916 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0919         TCGA-13-0920         TCGA-13-0921 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0923         TCGA-13-0924         TCGA-13-1477 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1481         TCGA-13-1482         TCGA-13-1483 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1484         TCGA-13-1485         TCGA-13-1487 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1488         TCGA-13-1489         TCGA-13-1491 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1492         TCGA-13-1494         TCGA-13-1495 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1496         TCGA-13-1497         TCGA-13-1498 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1499         TCGA-13-1500         TCGA-13-1501 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1504         TCGA-13-1505         TCGA-13-1506 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1507         TCGA-13-1509         TCGA-13-1510 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1511         TCGA-13-1512         TCGA-20-0987 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-20-0990         TCGA-20-0991         TCGA-20-0996 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-1021         TCGA-23-1022         TCGA-23-1023 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-1024         TCGA-23-1026         TCGA-23-1027 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-1028         TCGA-23-1030         TCGA-23-1031 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-1032         TCGA-23-1109         TCGA-23-1110 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1116         TCGA-23-1117 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-1118         TCGA-23-1119         TCGA-23-1120 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-1121         TCGA-23-1122         TCGA-23-1123 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-1124         TCGA-24-0966         TCGA-24-0968 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-0970         TCGA-24-0975         TCGA-24-0979 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-0980         TCGA-24-0982         TCGA-24-1103 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1104         TCGA-24-1105         TCGA-24-1416 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1426         TCGA-24-1427         TCGA-24-1428 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1430         TCGA-24-1431         TCGA-24-1434 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1435         TCGA-24-1436         TCGA-24-1463 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1464         TCGA-24-1466         TCGA-24-1467 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1930         TCGA-24-2020 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2023         TCGA-24-2026         TCGA-24-2027 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-25-1870         TCGA-25-1871 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-1877         TCGA-25-1878         TCGA-30-1853 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-30-1860         TCGA-30-1862         TCGA-30-1866 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-57-1992         TCGA-57-1993 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1724         TCGA-61-1728 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1917         TCGA-61-1918 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1919 
"22Q GAIN WILD-TYPE" 
D39V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN CNV          0    9
  22Q GAIN WILD-TYPE    3  550
     clus
vv    22Q GAIN CNV 22Q GAIN WILD-TYPE
  NO             0                  3
  YES            9                550
                    vv
clus                 R0 R1 R2
  22Q GAIN CNV        0  1  0
  22Q GAIN WILD-TYPE 14 25  2
D39V7, multiclass
[1] "Remove cluster labels:" "22Q GAIN CNV"          
clus
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                 1                 41 
        TCGA-04-1516         TCGA-04-1644         TCGA-13-0807 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-24-2033         TCGA-29-2414 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-36-2529         TCGA-36-2530 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-36-2532         TCGA-36-2534         TCGA-36-2537 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-36-2538         TCGA-36-2540         TCGA-36-2542 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-36-2543         TCGA-36-2544         TCGA-36-2545 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-36-2547         TCGA-36-2548         TCGA-36-2549 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-36-2551         TCGA-36-2552         TCGA-42-2582 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-42-2587         TCGA-42-2588         TCGA-42-2589 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2593         TCGA-57-1993 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-59-2363         TCGA-59-2372         TCGA-61-2612 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 

Clustering(40) Variable = Xq gain
D40V1, survival
                   sevent
clus2                 0   1
  XQ GAIN CNV        11  22
  XQ GAIN WILD-TYPE 252 262
      XQ GAIN CNV XQ GAIN WILD-TYPE 
               33               514 
      XQ GAIN CNV XQ GAIN WILD-TYPE 
               22               262 
$`XQ GAIN CNV`
TCGA-04-1351 TCGA-04-1655 TCGA-09-2043 TCGA-09-2045 TCGA-10-0927 TCGA-10-0933 
       65.46        45.34         6.15        35.15        81.47        11.70 
TCGA-10-0936 TCGA-13-0717 TCGA-13-0720 TCGA-13-0751 TCGA-13-0797 TCGA-13-0804 
       35.80        24.59        44.55        55.17         8.71        35.28 
TCGA-13-0921 TCGA-13-0923 TCGA-13-1505 TCGA-13-2060 TCGA-20-0987 TCGA-20-1687 
        4.64         6.41         4.21         8.58        23.05         2.66 
TCGA-23-1109 TCGA-23-1114 TCGA-23-1809 TCGA-24-1474 TCGA-25-1319 TCGA-25-1320 
       51.35        68.68         0.53        22.19        65.00        36.95 
TCGA-25-1329 TCGA-25-1633 TCGA-25-1871 TCGA-25-2397 TCGA-29-1691 TCGA-57-1586 
        2.96        60.59        24.99        12.00        47.18        22.32 
TCGA-59-2372 TCGA-61-1900 TCGA-61-2612 
       44.78         5.79         6.35 

$`XQ GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       63.98        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 
       71.47        82.36        56.55        41.59        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
      119.08        29.06        84.20        55.40        48.89        27.88 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-09-0364 
       28.64        64.64        36.23        31.86        47.70        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
        9.47        57.73        17.95        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       89.33        74.89        41.59        57.57        61.87        55.36 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 
       30.48        17.98         5.85         3.02         8.55        97.55 
TCGA-09-2044 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 
        6.12         4.50       112.37        71.11        63.09        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0928 
       20.91        26.93        12.46        54.31        25.91        18.48 
TCGA-10-0930 TCGA-10-0931 TCGA-10-0934 TCGA-10-0935 TCGA-10-0937 TCGA-10-0938 
       33.24        32.28         3.88        35.41        15.12        19.86 
TCGA-13-0714 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 
        6.21        39.58         2.73        12.39        31.07        15.19 
TCGA-13-0730 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       17.79         2.47        11.18        11.38        11.54        34.06 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       32.25        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 
       28.70        30.35        19.56         7.79         8.12         8.28 
TCGA-13-0802 TCGA-13-0803 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 
        8.19        43.82        35.28        13.61        68.91       107.18 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 
       91.40        74.27        66.64        70.39        61.81        67.99 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       69.01        43.36        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       47.38        48.33        47.84        44.94        44.84        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 
       27.68        34.06        29.98        21.14        14.89        13.81 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 
        6.08        10.88         6.61         7.36         6.05         5.92 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        6.84         4.70         4.21         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
       61.71        29.39        98.04        20.68        22.39        70.82 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 
       82.88        52.44        73.55        38.17        49.22         4.24 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
       54.31        37.61        38.37        13.97        32.84        16.57 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
        4.41         4.77         4.14         2.56         3.88         3.09 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0990 
       14.24        12.23        10.78         8.75         6.28        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 
       26.20        72.20        27.48        25.38        19.07        16.67 
TCGA-20-1686 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 
        2.93        47.54        42.51        40.54        15.39        26.83 
TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       31.73        49.41         8.81        29.10        18.87         2.24 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
       54.51         3.22        31.20         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
      129.96         4.27         6.38        39.09        33.47        58.13 
TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 
       24.95       115.89        87.48        91.66        77.00        49.84 
TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
        2.76         4.70         4.50         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 
       21.80        41.56         7.66        22.32        54.08        63.55 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 
       47.41         6.31         6.38         7.82         7.99         7.86 
TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 
        0.76         6.25         6.02         5.95         5.36         4.80 
TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 
       17.36        28.34        19.17        18.67        43.53         8.55 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
       72.92        12.46        45.14       105.99         9.11         3.42 
TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
        1.18        26.96        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 
       41.06        51.91        41.39        58.09        88.50        70.62 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 
       39.88        19.53        44.09        45.50        47.70        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 
       10.26        17.23        90.15        88.34        48.33        38.24 
TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 
        8.32         3.48         3.72         3.81         4.37        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
        5.75         5.49         9.80        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       11.05        81.11         4.87       151.99        44.84        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 
       34.82       109.68        14.43        53.95        18.48        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 
       64.01        44.48        57.07        36.16         0.79         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
       47.54        31.63        70.45        44.58         0.82        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 
       36.23        16.64        33.11        55.86        53.26         1.02 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 
       26.93        31.99        51.06        37.02         1.02        34.98 
TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
       33.96         2.99        12.00        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1634 
        0.36        20.58         7.86         0.30        56.94        35.54 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       51.22        14.93        18.05        85.05        13.02        49.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
        1.02        38.04         3.02        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
        2.96        29.00        30.97        26.96        78.87        44.71 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 
      101.75        38.53         0.79        33.70        31.17        68.28 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
        0.53        16.90        18.64        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 
       29.23        34.62        17.00        85.68        66.77        62.93 
TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 
       39.09        31.23        22.98        24.36        22.52        17.29 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 
       12.36        11.84        12.30        14.93         8.35         7.20 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 
        5.36        34.62        86.17        65.00        62.47        45.11 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 
        4.87        42.25        11.84        11.47         9.76        38.07 
TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 
       51.91        36.26         2.47        15.68         0.26        48.07 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 
       44.91        34.78         6.08        36.62         1.18        57.57 
TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 
       24.26        30.05        48.79        45.57        30.18        18.77 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 
       22.45         6.71        42.51        44.09         2.17        28.73 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 
       29.06        21.53        22.85        22.55         8.55        30.05 
TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 
       25.74        27.85        24.23        24.69        35.05        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 
       29.49        29.79        25.91        25.08        23.80        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 
        2.24        20.98        18.31        20.52        14.17         6.05 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 
       16.14        11.47        14.30         9.07         9.44         7.56 
TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 
        7.46         7.63         1.48        24.03        11.38        21.14 
TCGA-57-1585 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
        1.74        28.96        25.05        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       22.32       116.12         9.40        34.39         2.14         5.39 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 
       11.11         8.05        20.94        31.40        18.54        27.88 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
        4.34        31.76        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1901 
        2.43        33.67        43.69         1.41         8.42        11.41 
TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 
       13.02         9.07        34.13        31.30        37.02        42.48 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 
       48.92        56.58        67.73        43.43        15.75        38.17 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 
        1.97         5.52        14.50        17.98         3.98        30.61 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
       39.85        30.64         1.18        45.96        45.40         4.80 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 
        4.77        51.72        71.74        61.64        58.39        60.62 
TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       65.49        55.50         6.48        76.83        20.68        44.52 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2613 TCGA-61-2614 
      125.72        22.22        31.07         8.58 

      XQ GAIN CNV XQ GAIN WILD-TYPE 
             0.53              0.26 
      XQ GAIN CNV XQ GAIN WILD-TYPE 
            81.47            180.16 
      XQ GAIN CNV XQ GAIN WILD-TYPE 
           24.590            28.405 
[1] "0.5 - 81.5 (24.6)"  "0.3 - 180.2 (28.4)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "XQ GAIN CNV"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV"       "XQ GAIN CNV" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV"       "XQ GAIN CNV" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "XQ GAIN CNV"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV"       "XQ GAIN CNV" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV"       "XQ GAIN CNV" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "XQ GAIN CNV"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV"       "XQ GAIN CNV" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV"       "XQ GAIN CNV" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D40V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  XQ GAIN CNV             0    34                0
  XQ GAIN WILD-TYPE       2   514                2
D40V3, multiclass
                  clus
vv                 XQ GAIN CNV XQ GAIN WILD-TYPE
  OMENTUM                    0                 2
  OVARY                     34               514
  PERITONEUM OVARY           0                 2
D40V4, continuous
                   vv
clus                I+II III  IV
  XQ GAIN CNV          0   9   0
  XQ GAIN WILD-TYPE    4 124  34
D40V5, multiclass
      clus
vv     XQ GAIN CNV XQ GAIN WILD-TYPE
  I+II           0                 4
  III            9               124
  IV             0                34
D40V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN CNV          0   34
  XQ GAIN WILD-TYPE    3  525
     clus
vv    XQ GAIN CNV XQ GAIN WILD-TYPE
  NO            0                 3
  YES          34               525
                   vv
clus                R0 R1 R2
  XQ GAIN CNV        1  1  0
  XQ GAIN WILD-TYPE 13 25  2
D40V7, multiclass
[1] "Remove cluster labels:" "XQ GAIN CNV"           
clus
      XQ GAIN CNV XQ GAIN WILD-TYPE 
                2                40 
       TCGA-04-1516        TCGA-04-1644        TCGA-13-0807        TCGA-13-0911 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-29-2414        TCGA-29-2425        TCGA-29-2427 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-2428        TCGA-29-2429        TCGA-29-2431        TCGA-29-2432 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-2434        TCGA-29-2436        TCGA-36-2529        TCGA-36-2530 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2532        TCGA-36-2534        TCGA-36-2537        TCGA-36-2538 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2540        TCGA-36-2542        TCGA-36-2543        TCGA-36-2544 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2545        TCGA-36-2547        TCGA-36-2548        TCGA-36-2549 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2587 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-42-2588        TCGA-42-2589        TCGA-42-2590        TCGA-42-2593 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-57-1993        TCGA-59-2363        TCGA-61-2613        TCGA-61-2614 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 

Clustering(41) Variable = 1p loss
D41V1, survival
                   sevent
clus2                 0   1
  1P LOSS CNV        14  18
  1P LOSS WILD-TYPE 249 266
      1P LOSS CNV 1P LOSS WILD-TYPE 
               32               515 
      1P LOSS CNV 1P LOSS WILD-TYPE 
               18               266 
$`1P LOSS CNV`
TCGA-04-1351 TCGA-04-1362 TCGA-04-1638 TCGA-09-1672 TCGA-10-0928 TCGA-10-0935 
       65.46        44.32        55.40         5.85        18.48        35.41 
TCGA-13-0905 TCGA-13-1409 TCGA-13-1477 TCGA-13-1489 TCGA-20-1682 TCGA-20-1687 
       47.84         6.84        54.61        82.88        27.48         2.66 
TCGA-23-1022 TCGA-23-2643 TCGA-23-2645 TCGA-24-0982 TCGA-24-1103 TCGA-24-1423 
       42.51         4.70         4.50        22.32        54.08         6.25 
TCGA-24-1424 TCGA-24-2020 TCGA-25-1316 TCGA-25-1632 TCGA-25-2396 TCGA-25-2408 
        6.02       151.99        37.02        56.94         3.02        30.97 
TCGA-29-1768 TCGA-30-1853 TCGA-30-1859 TCGA-30-1860 TCGA-36-2540 TCGA-61-1727 
       31.23        36.26        48.07        44.91        23.80        18.54 
TCGA-61-2012 TCGA-61-2101 
       30.64        55.50 

$`1P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1356 TCGA-04-1361 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       63.98        49.28        32.52        33.67        76.54        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       82.36        56.55        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 
       29.06        84.20        48.89        27.88        28.64        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       36.23        31.86        47.70        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       57.73        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       74.89        41.59        57.57        61.87        55.36        30.48 
TCGA-09-1670 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
       17.98         3.02         8.55        97.55         6.15         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 
       35.15         4.50       112.37        71.11        63.09        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       20.91        26.93        12.46        54.31        25.91        81.47 
TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0936 TCGA-10-0937 
       33.24        32.28        11.70         3.88        35.80        15.12 
TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 
       19.86         6.21        24.59        44.55        39.58         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 
       12.39        31.07        15.19        17.79        55.17         2.47 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 
       11.18        11.38        11.54        34.06        32.25        31.04 
TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 
       21.40         8.42        38.93        36.72        28.70        30.35 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 
       19.56         8.71         7.79         8.12         8.28         8.19 
TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 
       43.82        35.28        35.28        13.61        68.91       107.18 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 
       91.40        74.27        66.64        70.39        61.81        67.99 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       69.01        43.36        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       47.38        48.33        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       34.06        29.98        21.14        14.89        13.81         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
        6.41         6.08        10.88         6.61         7.36         6.05 
TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1481 TCGA-13-1482 
        5.92         4.70         4.21         5.33        87.06        61.71 
TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 
       29.39        98.04        20.68        22.39        70.82        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 
       73.55        38.17        49.22         4.24        54.31        37.61 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       38.37        13.97        32.84        16.57         4.21         4.41 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 
        4.77         4.14         2.56         3.88         3.09        14.24 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 
       12.23         8.58        10.78         8.75         6.28        23.05 
TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 
       25.94        26.20        72.20        25.38        19.07        16.67 
TCGA-20-1686 TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
        2.93        47.54        40.54        15.39        26.83        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 
       49.41         8.81        29.10        18.87         2.24        51.35 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 
       54.51         3.22        31.20        68.68         4.57        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 
       86.01       129.96         4.27         6.38        39.09        33.47 
TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 
       58.13         0.53        24.95       115.89        87.48        91.66 
TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
       77.00        49.84         2.76         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
       21.80        41.56         7.66        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1425 
        6.38         7.82         7.99         7.86         0.76         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 
        5.36         4.80        17.36        28.34        19.17        18.67 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 
       43.53         8.55        72.92        12.46        45.14       105.99 
TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 
        9.11         3.42         1.18        22.19        26.96        57.37 
TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
       64.27        16.21        56.58        41.06        51.91        41.39 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 
       58.09        88.50        70.62        39.88        19.53        44.09 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 
       45.50        47.70        25.87        10.26        17.23        90.15 
TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 
       88.34        48.33        38.24         8.32         3.48         3.72 
TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.81         4.37        11.28         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 
       22.65        30.21        16.41        11.05        81.11         4.87 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
       44.84        58.16        34.82       109.68        14.43        53.95 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 
       18.48        28.18        64.01        44.48        57.07        36.16 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
        0.79         0.36        47.54        31.63        70.45        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
        0.82        67.36        36.23        16.64        33.11        55.86 
TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1317 
       53.26         1.02        26.93        31.99        51.06         1.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
       34.98        65.00        36.95        33.96         2.99        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
        2.96        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 
        7.86         0.30        60.59        35.54        51.22        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       24.99        18.05        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 
       38.04        12.00        45.01        19.99        42.02         2.96 
TCGA-25-2404 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 
       29.00        26.96        78.87        44.71        47.18       101.75 
TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 
       38.53         0.79        33.70        31.17        68.28         0.53 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       16.90        18.64        59.67        18.25        41.95        29.23 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 
       34.62        17.00        85.68        66.77        62.93        39.09 
TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 
       22.98        24.36        22.52        17.29        12.36        11.84 
TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 
       12.30        14.93         8.35         7.20         5.36        34.62 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 
       86.17        65.00        62.47        45.11         4.87        42.25 
TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 
       11.84        11.47         9.76        38.07        51.91         2.47 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 
       15.68         0.26        34.78         6.08        36.62         1.18 
TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
       57.57        24.26        30.05        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 
       18.77        22.45         6.71        42.51        44.09         2.17 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 
       28.73        29.06        21.53        22.85        22.55         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 
       30.05        25.74        27.85        24.23        24.69        35.05 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2542 
       33.01        29.49        29.79        25.91        25.08        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 
        2.24        20.98        18.31        20.52        14.17         6.05 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 
       16.14        11.47        14.30         9.07         9.44         7.56 
TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 
        7.46         7.63         1.48        24.03        11.38        21.14 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 
        1.74        22.32        28.96        25.05        25.02       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 
       80.12        22.32       116.12         9.40        34.39         2.14 
TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 
        5.39        44.78        11.11         8.05        20.94        31.40 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       27.88         4.34        31.76        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 
       35.80         2.43        33.67        43.69         1.41         8.42 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 
        5.79        11.41        13.02         9.07        34.13        31.30 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 
       37.02        42.48        48.92        56.58        67.73        43.43 
TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 
       15.75        38.17         1.97         5.52        14.50        17.98 
TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 
        3.98        30.61        39.85         1.18        45.96        45.40 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
        4.80         4.77        51.72        71.74        61.64        58.39 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       60.62        65.49         6.48        76.83        20.68        44.52 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
      125.72        22.22         6.35        31.07         8.58 

      1P LOSS CNV 1P LOSS WILD-TYPE 
             2.66              0.26 
      1P LOSS CNV 1P LOSS WILD-TYPE 
           151.99            180.16 
      1P LOSS CNV 1P LOSS WILD-TYPE 
            33.32             27.85 
[1] "2.7 - 152.0 (33.3)" "0.3 - 180.2 (27.9)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
      "1P LOSS CNV" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV"       "1P LOSS CNV" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV"       "1P LOSS CNV" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
      "1P LOSS CNV"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV"       "1P LOSS CNV" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
      "1P LOSS CNV" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV"       "1P LOSS CNV" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV"       "1P LOSS CNV" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
      "1P LOSS CNV"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV"       "1P LOSS CNV" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV"       "1P LOSS CNV" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV"       "1P LOSS CNV" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV"       "1P LOSS CNV" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D41V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  1P LOSS CNV             0    34                0
  1P LOSS WILD-TYPE       2   514                2
D41V3, multiclass
                  clus
vv                 1P LOSS CNV 1P LOSS WILD-TYPE
  OMENTUM                    0                 2
  OVARY                     34               514
  PERITONEUM OVARY           0                 2
D41V4, continuous
                   vv
clus                I+II III  IV
  1P LOSS CNV          0  11   1
  1P LOSS WILD-TYPE    4 122  33
D41V5, multiclass
      clus
vv     1P LOSS CNV 1P LOSS WILD-TYPE
  I+II           0                 4
  III           11               122
  IV             1                33
D41V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS CNV          1   33
  1P LOSS WILD-TYPE    2  526
     clus
vv    1P LOSS CNV 1P LOSS WILD-TYPE
  NO            1                 2
  YES          33               526
                   vv
clus                R0 R1 R2
  1P LOSS CNV        0  1  0
  1P LOSS WILD-TYPE 14 25  2
D41V7, multiclass
[1] "Remove cluster labels:" "1P LOSS CNV"           
clus
      1P LOSS CNV 1P LOSS WILD-TYPE 
                1                41 
       TCGA-04-1516        TCGA-04-1644        TCGA-13-0807        TCGA-13-0911 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-29-2414        TCGA-29-2425        TCGA-29-2427 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-2428        TCGA-29-2429        TCGA-29-2431        TCGA-29-2432 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-2434        TCGA-29-2436        TCGA-36-2529        TCGA-36-2530 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2532        TCGA-36-2534        TCGA-36-2537        TCGA-36-2538 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2542        TCGA-36-2543        TCGA-36-2544        TCGA-36-2545 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2547        TCGA-36-2548        TCGA-36-2549        TCGA-36-2551 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2552        TCGA-42-2582        TCGA-42-2587        TCGA-42-2588 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2593        TCGA-57-1993 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-2612        TCGA-61-2613 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2614 
"1P LOSS WILD-TYPE" 

Clustering(42) Variable = 1q loss
D42V1, survival
                   sevent
clus2                 0   1
  1Q LOSS CNV         9  11
  1Q LOSS WILD-TYPE 254 273
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
               20               527 
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
               11               273 
$`1Q LOSS CNV`
TCGA-04-1351 TCGA-04-1362 TCGA-10-0928 TCGA-13-0905 TCGA-13-1489 TCGA-20-1682 
       65.46        44.32        18.48        47.84        82.88        27.48 
TCGA-23-1022 TCGA-23-1109 TCGA-23-2643 TCGA-23-2645 TCGA-24-1103 TCGA-24-1424 
       42.51        51.35         4.70         4.50        54.08         6.02 
TCGA-24-2020 TCGA-25-1632 TCGA-29-1768 TCGA-30-1853 TCGA-30-1859 TCGA-30-1860 
      151.99        56.94        31.23        36.26        48.07        44.91 
TCGA-61-1727 TCGA-61-2012 
       18.54        30.64 

$`1Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1356 TCGA-04-1361 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       63.98        49.28        32.52        33.67        76.54        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       82.36        56.55        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
       29.06        84.20        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       64.64        36.23        31.86        47.70        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
        9.47        57.73        17.95        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       89.33        74.89        41.59        57.57        61.87        55.36 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 
       30.48        17.98         5.85         3.02         8.55        97.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
        6.15         6.12        35.15         4.50       112.37        71.11 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       63.09        39.75        20.91        26.93        12.46        54.31 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       25.91        81.47        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
       35.41        35.80        15.12        19.86         6.21        24.59 
TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 
       44.55        39.58         2.73        12.39        31.07        15.19 
TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 
       17.79        55.17         2.47        11.18        11.38        11.54 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       34.06        32.25        31.04        21.40         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       36.72        28.70        30.35        19.56         8.71         7.79 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        8.12         8.28         8.19        43.82        35.28        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       13.61        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 
       70.39        61.81        67.99        69.01        43.36        57.47 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0906 
       56.15        57.07        19.36        47.38        48.33        44.94 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       44.84        37.08        27.68        34.06        29.98        21.14 
TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       14.89        13.81         4.64         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
        6.61         7.36         6.05         5.92         6.84         4.70 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.21         5.33        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 
       98.04        20.68        22.39        70.82        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       38.17        49.22         4.24        54.31        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 
       13.97        32.84        16.57         4.21         4.41         4.77 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 
        4.14         2.56         3.88         3.09        14.24        12.23 
TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 
        8.58        10.78         8.75         6.28        23.05        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 
       26.20        72.20        25.38        19.07        16.67         2.93 
TCGA-20-1687 TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
        2.66        47.54        40.54        15.39        26.83        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1110 
       49.41         8.81        29.10        18.87         2.24        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
        3.22        31.20        68.68         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
      129.96         4.27         6.38        39.09        33.47        58.13 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
        0.53        24.95       115.89        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
       49.84         2.76         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
       41.56         7.66        22.32        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 
        6.38         7.82         7.99         7.86         0.76         6.25 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 
        5.95         5.36         4.80        17.36        28.34        19.17 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 
       18.67        43.53         8.55        72.92        12.46        45.14 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 
      105.99         9.11         3.42         1.18        22.19        26.96 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       57.37        64.27        16.21        56.58        41.06        51.91 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 
       41.39        58.09        88.50        70.62        39.88        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       90.15        88.34        48.33        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
        3.72         3.81         4.37        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        9.80        22.65        30.21        16.41        11.05        81.11 
TCGA-24-2019 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 
        4.87        44.84        58.16        34.82       109.68        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
       53.95        18.48        28.18        64.01        44.48        57.07 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 
       36.16         0.79         0.36        47.54        31.63        70.45 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 
       44.58         0.82        67.36        36.23        16.64        33.11 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       55.86        53.26         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       37.02         1.02        34.98        65.00        36.95        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
        2.99        12.00         2.96        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 
        0.36        20.58         7.86         0.30        60.59        35.54 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
       51.22        14.93        24.99        18.05        85.05        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
       49.05         1.02        38.04         3.02        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       19.99        42.02         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       78.87        44.71        47.18       101.75        38.53         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
       33.70        31.17        68.28         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       59.67        18.25        41.95        29.23        34.62        17.00 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1769 TCGA-29-1770 
       85.68        66.77        62.93        39.09        22.98        24.36 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       22.52        17.29        12.36        11.84        12.30        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
        8.35         7.20         5.36        34.62        86.17        65.00 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 
       62.47        45.11         4.87        42.25        11.84        11.47 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 
        9.76        38.07        51.91         2.47        15.68         0.26 
TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       34.78         6.08        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 
        6.71        42.51        44.09         2.17        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 
       21.53        22.85        22.55         8.55        30.05        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
       27.85        24.23        24.69        35.05        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.79        25.91        25.08        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 
       20.98        18.31        20.52        14.17         6.05        16.14 
TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       11.47        14.30         9.07         9.44         7.56         7.46 
TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 
        7.63         1.48        24.03        11.38        21.14         1.74 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       22.32        28.96        25.05        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       22.32       116.12         9.40        34.39         2.14         5.39 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1728 
       44.78        11.11         8.05        20.94        31.40        27.88 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
        4.34        31.76        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 
        2.43        33.67        43.69         1.41         8.42         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
       11.41        13.02         9.07        34.13        31.30        37.02 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
       42.48        48.92        56.58        67.73        43.43        15.75 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
       38.17         1.97         5.52        14.50        17.98         3.98 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
       30.61        39.85         1.18        45.96        45.40         4.80 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 
        4.77        51.72        71.74        61.64        58.39        60.62 
TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       65.49        55.50         6.48        76.83        20.68        44.52 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
      125.72        22.22         6.35        31.07         8.58 

      1Q LOSS CNV 1Q LOSS WILD-TYPE 
             4.50              0.26 
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
           151.99            180.16 
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
           43.415            27.680 
[1] "4.5 - 152.0 (43.4)" "0.3 - 180.2 (27.7)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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      "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV"       "1Q LOSS CNV" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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      "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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      "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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      "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV"       "1Q LOSS CNV" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV"       "1Q LOSS CNV" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
      "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV"       "1Q LOSS CNV" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV"       "1Q LOSS CNV" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D42V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  1Q LOSS CNV             0    22                0
  1Q LOSS WILD-TYPE       2   526                2
D42V3, multiclass
                  clus
vv                 1Q LOSS CNV 1Q LOSS WILD-TYPE
  OMENTUM                    0                 2
  OVARY                     22               526
  PERITONEUM OVARY           0                 2
D42V4, continuous
                   vv
clus                I+II III  IV
  1Q LOSS CNV          0   9   0
  1Q LOSS WILD-TYPE    4 124  34
D42V5, multiclass
      clus
vv     1Q LOSS CNV 1Q LOSS WILD-TYPE
  I+II           0                 4
  III            9               124
  IV             0                34
D42V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS CNV          1   21
  1Q LOSS WILD-TYPE    2  538
     clus
vv    1Q LOSS CNV 1Q LOSS WILD-TYPE
  NO            1                 2
  YES          21               538
                   vv
clus                R0 R1 R2
  1Q LOSS CNV        0  0  0
  1Q LOSS WILD-TYPE 14 26  2
D42V7, multiclass

Clustering(43) Variable = 2p loss
D43V1, survival
                   sevent
clus2                 0   1
  2P LOSS CNV        11  15
  2P LOSS WILD-TYPE 252 269
      2P LOSS CNV 2P LOSS WILD-TYPE 
               26               521 
      2P LOSS CNV 2P LOSS WILD-TYPE 
               15               269 
$`2P LOSS CNV`
TCGA-04-1362 TCGA-04-1517 TCGA-09-1673 TCGA-13-0723 TCGA-13-0890 TCGA-13-0891 
       44.32        19.99         3.02        39.58        67.99        69.01 
TCGA-13-0904 TCGA-13-0916 TCGA-13-1494 TCGA-20-1682 TCGA-24-1464 TCGA-24-1614 
       48.33        21.14        38.17        27.48        12.46        48.33 
TCGA-24-1847 TCGA-24-1930 TCGA-24-2020 TCGA-24-2260 TCGA-25-1313 TCGA-25-2392 
       11.28        81.11       151.99        36.16        26.93         1.02 
TCGA-29-1688 TCGA-29-1693 TCGA-29-1770 TCGA-30-1853 TCGA-36-2543 TCGA-61-2016 
       78.87       101.75        24.36        36.26         2.24         1.18 
TCGA-61-2087 TCGA-61-2109 
        4.80        20.68 

$`2P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1364 TCGA-04-1365 
       63.98        65.46        49.28        32.52        33.67        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1525 TCGA-04-1530 
       71.47        82.36        56.55        41.59        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
       29.06        84.20        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       64.64        36.23        31.86        47.70        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
        9.47        57.73        17.95        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       89.33        74.89        41.59        57.57        61.87        55.36 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 
       30.48        17.98         5.85         8.55        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
        6.12        35.15         4.50       112.37        71.11        63.09 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       39.75        20.91        26.93        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       81.47        18.48        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
       35.41        35.80        15.12        19.86         6.21        24.59 
TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       44.55         2.73        12.39        31.07        15.19        17.79 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       55.17         2.47        11.18        11.38        11.54        34.06 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       32.25        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       28.70        30.35        19.56         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.28         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 
       68.91       107.18        91.40        74.27        66.64        70.39 
TCGA-13-0889 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       61.81        43.36        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       47.38        47.84        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 
       34.06        29.98        14.89        13.81         4.64         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 
        6.08        10.88         6.61         7.36         6.05         5.92 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        6.84         4.70         4.21         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
       61.71        29.39        98.04        20.68        22.39        70.82 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 
       82.88        52.44        73.55        49.22         4.24        54.31 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       37.61        38.37        13.97        32.84        16.57         4.21 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
        4.41         4.77         4.14         2.56         3.88         3.09 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
       14.24        12.23         8.58        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1683 TCGA-20-1684 
       23.05        25.94        26.20        72.20        25.38        19.07 
TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 
       16.67         2.93         2.66        47.54        42.51        40.54 
TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 
       15.39        26.83        31.73        49.41         8.81        29.10 
TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 
       18.87         2.24        51.35        54.51         3.22        31.20 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       68.68         4.57        33.30        86.01       129.96         4.27 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 
        6.38        39.09        33.47        58.13         0.53        24.95 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
      115.89        87.48        91.66        77.00        49.84         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        4.70         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       41.56         7.66        22.32        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 
        6.31         6.38         7.82         7.99         7.86         0.76 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        6.25         6.02         5.95         5.36         4.80        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 
       28.34        19.17        18.67        43.53         8.55        72.92 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 
       45.14       105.99         9.11         3.42         1.18        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 
       26.96        57.37        64.27        16.21        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       51.91        41.39        58.09        88.50        70.62        39.88 
TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       19.53        44.09        45.50        47.70        25.87        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       17.23        90.15        88.34        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.72         3.81         4.37         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-2019 TCGA-24-2023 
       22.65        30.21        16.41        11.05         4.87        44.84 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 
       58.16        34.82       109.68        14.43        53.95        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2261 TCGA-24-2262 
       28.18        64.01        44.48        57.07         0.79         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
       47.54        31.63        70.45        44.58         0.82        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 
       36.23        16.64        33.11        55.86        53.26         1.02 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 
       31.99        51.06        37.02         1.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 
       36.95        33.96         2.99        12.00         2.96        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 
       18.02        15.78         0.36        20.58         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 
       56.94        60.59        35.54        51.22        14.93        24.99 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 TCGA-25-2396 
       18.05        85.05        13.02        49.05        38.04         3.02 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 
       12.00        45.01        19.99        42.02         2.96        29.00 
TCGA-25-2408 TCGA-25-2409 TCGA-29-1690 TCGA-29-1691 TCGA-29-1694 TCGA-29-1695 
       30.97        26.96        44.71        47.18        38.53         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
       33.70        31.17        68.28         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       59.67        18.25        41.95        29.23        34.62        17.00 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       85.68        66.77        62.93        39.09        31.23        22.98 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       22.52        17.29        12.36        11.84        12.30        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
        8.35         7.20         5.36        34.62        86.17        65.00 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 
       62.47        45.11         4.87        42.25        11.84        11.47 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 
        9.76        38.07        51.91         2.47        15.68         0.26 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 
       48.07        44.91        34.78         6.08        36.62         1.18 
TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
       57.57        24.26        30.05        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 
       18.77        22.45         6.71        42.51        44.09         2.17 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 
       28.73        29.06        21.53        22.85        22.55         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 
       30.05        25.74        27.85        24.23        24.69        35.05 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       33.01        29.49        29.79        25.91        25.08        23.80 
TCGA-36-2542 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 
       21.60        20.98        18.31        20.52        14.17         6.05 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 
       16.14        11.47        14.30         9.07         9.44         7.56 
TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 
        7.46         7.63         1.48        24.03        11.38        21.14 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 
        1.74        22.32        28.96        25.05        25.02       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 
       80.12        22.32       116.12         9.40        34.39         2.14 
TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 
        5.39        44.78        11.11         8.05        20.94        31.40 
TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 
       18.54        27.88         4.34        31.76        28.47        48.79 
TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 
       44.84        35.80         2.43        33.67        43.69         1.41 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
        8.42         5.79        11.41        13.02         9.07        34.13 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 
       31.30        37.02        42.48        48.92        56.58        67.73 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       43.43        15.75        38.17         1.97         5.52        14.50 
TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2017 
       17.98         3.98        30.61        39.85        30.64        45.96 
TCGA-61-2018 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
       45.40         4.77        51.72        71.74        61.64        58.39 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2110 
       60.62        65.49        55.50         6.48        76.83        44.52 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
      125.72        22.22         6.35        31.07         8.58 

      2P LOSS CNV 2P LOSS WILD-TYPE 
             1.02              0.26 
      2P LOSS CNV 2P LOSS WILD-TYPE 
           151.99            180.16 
      2P LOSS CNV 2P LOSS WILD-TYPE 
            31.82             28.18 
[1] "1.0 - 152.0 (31.8)" "0.3 - 180.2 (28.2)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
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"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
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"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
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"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
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"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
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"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
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"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D43V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  2P LOSS CNV             0    26                0
  2P LOSS WILD-TYPE       2   522                2
D43V3, multiclass
                  clus
vv                 2P LOSS CNV 2P LOSS WILD-TYPE
  OMENTUM                    0                 2
  OVARY                     26               522
  PERITONEUM OVARY           0                 2
D43V4, continuous
                   vv
clus                I+II III  IV
  2P LOSS CNV          0   7   2
  2P LOSS WILD-TYPE    4 126  32
D43V5, multiclass
      clus
vv     2P LOSS CNV 2P LOSS WILD-TYPE
  I+II           0                 4
  III            7               126
  IV             2                32
D43V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS CNV          0   26
  2P LOSS WILD-TYPE    3  533
     clus
vv    2P LOSS CNV 2P LOSS WILD-TYPE
  NO            0                 3
  YES          26               533
                   vv
clus                R0 R1 R2
  2P LOSS CNV        0  1  0
  2P LOSS WILD-TYPE 14 25  2
D43V7, multiclass
[1] "Remove cluster labels:" "2P LOSS CNV"           
clus
      2P LOSS CNV 2P LOSS WILD-TYPE 
                1                41 
       TCGA-04-1516        TCGA-04-1644        TCGA-13-0807        TCGA-13-0911 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-29-2414        TCGA-29-2425        TCGA-29-2427 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-2428        TCGA-29-2429        TCGA-29-2431        TCGA-29-2432 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-2434        TCGA-29-2436        TCGA-36-2529        TCGA-36-2530 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2532        TCGA-36-2534        TCGA-36-2537        TCGA-36-2538 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2540        TCGA-36-2542        TCGA-36-2544        TCGA-36-2545 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2547        TCGA-36-2548        TCGA-36-2549        TCGA-36-2551 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2552        TCGA-42-2582        TCGA-42-2587        TCGA-42-2588 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2593        TCGA-57-1993 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-2612        TCGA-61-2613 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2614 
"2P LOSS WILD-TYPE" 

Clustering(44) Variable = 2q loss
D44V1, survival
                   sevent
clus2                 0   1
  2Q LOSS CNV        13  17
  2Q LOSS WILD-TYPE 250 267
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
               30               517 
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
               17               267 
$`2Q LOSS CNV`
TCGA-04-1349 TCGA-04-1517 TCGA-09-1673 TCGA-13-0723 TCGA-13-0890 TCGA-13-0891 
       21.57        19.99         3.02        39.58        67.99        69.01 
TCGA-13-0904 TCGA-13-0916 TCGA-13-1494 TCGA-20-1682 TCGA-24-1464 TCGA-24-1614 
       48.33        21.14        38.17        27.48        12.46        48.33 
TCGA-24-1847 TCGA-24-1930 TCGA-24-2020 TCGA-24-2260 TCGA-25-1313 TCGA-25-1635 
       11.28        81.11       151.99        36.16        26.93        51.22 
TCGA-25-2392 TCGA-29-1688 TCGA-29-1693 TCGA-29-1770 TCGA-30-1853 TCGA-30-1887 
        1.02        78.87       101.75        24.36        36.26        24.26 
TCGA-36-1575 TCGA-36-2529 TCGA-36-2543 TCGA-61-2016 TCGA-61-2087 TCGA-61-2109 
        8.55        35.05         2.24         1.18         4.80        20.68 

$`2Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1350 
       18.51        11.87        65.49        63.06        48.76        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       65.46        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1525 TCGA-04-1530 
       71.47        82.36        56.55        41.59        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
       29.06        84.20        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       64.64        36.23        31.86        47.70        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
        9.47        57.73        17.95        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       89.33        74.89        41.59        57.57        61.87        55.36 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 
       30.48        17.98         5.85         8.55        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
        6.12        35.15         4.50       112.37        71.11        63.09 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       39.75        20.91        26.93        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       81.47        18.48        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
       35.41        35.80        15.12        19.86         6.21        24.59 
TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       44.55         2.73        12.39        31.07        15.19        17.79 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       55.17         2.47        11.18        11.38        11.54        34.06 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       32.25        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       28.70        30.35        19.56         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.28         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 
       68.91       107.18        91.40        74.27        66.64        70.39 
TCGA-13-0889 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       61.81        43.36        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       47.38        47.84        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 
       34.06        29.98        14.89        13.81         4.64         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 
        6.08        10.88         6.61         7.36         6.05         5.92 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        6.84         4.70         4.21         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
       61.71        29.39        98.04        20.68        22.39        70.82 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 
       82.88        52.44        73.55        49.22         4.24        54.31 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       37.61        38.37        13.97        32.84        16.57         4.21 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
        4.41         4.77         4.14         2.56         3.88         3.09 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
       14.24        12.23         8.58        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1683 TCGA-20-1684 
       23.05        25.94        26.20        72.20        25.38        19.07 
TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 
       16.67         2.93         2.66        47.54        42.51        40.54 
TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 
       15.39        26.83        31.73        49.41         8.81        29.10 
TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 
       18.87         2.24        51.35        54.51         3.22        31.20 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       68.68         4.57        33.30        86.01       129.96         4.27 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 
        6.38        39.09        33.47        58.13         0.53        24.95 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
      115.89        87.48        91.66        77.00        49.84         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        4.70         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       41.56         7.66        22.32        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 
        6.31         6.38         7.82         7.99         7.86         0.76 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        6.25         6.02         5.95         5.36         4.80        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 
       28.34        19.17        18.67        43.53         8.55        72.92 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 
       45.14       105.99         9.11         3.42         1.18        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 
       26.96        57.37        64.27        16.21        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       51.91        41.39        58.09        88.50        70.62        39.88 
TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       19.53        44.09        45.50        47.70        25.87        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       17.23        90.15        88.34        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.72         3.81         4.37         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-2019 TCGA-24-2023 
       22.65        30.21        16.41        11.05         4.87        44.84 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 
       58.16        34.82       109.68        14.43        53.95        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2261 TCGA-24-2262 
       28.18        64.01        44.48        57.07         0.79         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
       47.54        31.63        70.45        44.58         0.82        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 
       36.23        16.64        33.11        55.86        53.26         1.02 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 
       31.99        51.06        37.02         1.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 
       36.95        33.96         2.99        12.00         2.96        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 
       18.02        15.78         0.36        20.58         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 
       56.94        60.59        35.54        14.93        24.99        18.05 
TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 
       85.05        13.02        49.05        38.04         3.02        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
       45.01        19.99        42.02         2.96        29.00        30.97 
TCGA-25-2409 TCGA-29-1690 TCGA-29-1691 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 
       26.96        44.71        47.18        38.53         0.79        33.70 
TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 
       31.17        68.28         0.53        16.90        18.64        59.67 
TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 
       18.25        41.95        29.23        34.62        17.00        85.68 
TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 
       66.77        62.93        39.09        31.23        22.98        22.52 
TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 
       17.29        12.36        11.84        12.30        14.93         8.35 
TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 
        7.20         5.36        34.62        86.17        65.00        62.47 
TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 
       45.11         4.87        42.25        11.84        11.47         9.76 
TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 
       38.07        51.91         2.47        15.68         0.26        48.07 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 
       44.91        34.78         6.08        36.62         1.18        57.57 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 
        6.71        42.51        44.09         2.17        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       21.53        22.85        22.55        30.05        25.74        27.85 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       24.23        24.69        33.01        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       25.08        23.80        21.60        20.98        18.31        20.52 
TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 
       14.17         6.05        16.14        11.47        14.30         9.07 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 
        9.44         7.56         7.46         7.63         1.48        24.03 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 
       11.38        21.14         1.74        22.32        28.96        25.05 
TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 
       25.02       180.16        80.12        22.32       116.12         9.40 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 
       34.39         2.14         5.39        44.78        11.11         8.05 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 
       20.94        31.40        18.54        27.88         4.34        31.76 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       28.47        48.79        44.84        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
       43.69         1.41         8.42         5.79        11.41        13.02 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
        9.07        34.13        31.30        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       56.58        67.73        43.43        15.75        38.17         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 
        5.52        14.50        17.98         3.98        30.61        39.85 
TCGA-61-2012 TCGA-61-2017 TCGA-61-2018 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
       30.64        45.96        45.40         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       61.64        58.39        60.62        65.49        55.50         6.48 
TCGA-61-2104 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 
       76.83        44.52       125.72        22.22         6.35        31.07 
TCGA-61-2614 
        8.58 

      2Q LOSS CNV 2Q LOSS WILD-TYPE 
             1.02              0.26 
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
           151.99            180.16 
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
           27.205            28.340 
[1] "1.0 - 152.0 (27.2)" "0.3 - 180.2 (28.3)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D44V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  2Q LOSS CNV             0    29                1
  2Q LOSS WILD-TYPE       2   519                1
D44V3, multiclass
                  clus
vv                 2Q LOSS CNV 2Q LOSS WILD-TYPE
  OMENTUM                    0                 2
  OVARY                     29               519
  PERITONEUM OVARY           1                 1
D44V4, continuous
                   vv
clus                I+II III  IV
  2Q LOSS CNV          0   8   2
  2Q LOSS WILD-TYPE    4 125  32
D44V5, multiclass
      clus
vv     2Q LOSS CNV 2Q LOSS WILD-TYPE
  I+II           0                 4
  III            8               125
  IV             2                32
D44V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS CNV          0   30
  2Q LOSS WILD-TYPE    3  529
     clus
vv    2Q LOSS CNV 2Q LOSS WILD-TYPE
  NO            0                 3
  YES          30               529
                   vv
clus                R0 R1 R2
  2Q LOSS CNV        0  2  0
  2Q LOSS WILD-TYPE 14 24  2
D44V7, multiclass
[1] "Remove cluster labels:" "2Q LOSS CNV"           
clus
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
                2                40 
       TCGA-04-1516        TCGA-04-1644        TCGA-13-0807        TCGA-13-0911 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-29-2414        TCGA-29-2425        TCGA-29-2427 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-2428        TCGA-29-2429        TCGA-29-2431        TCGA-29-2432 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-2434        TCGA-29-2436        TCGA-36-2530        TCGA-36-2532 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-2534        TCGA-36-2537        TCGA-36-2538        TCGA-36-2540 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-2542        TCGA-36-2544        TCGA-36-2545        TCGA-36-2547 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-2548        TCGA-36-2549        TCGA-36-2551        TCGA-36-2552 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-42-2582        TCGA-42-2587        TCGA-42-2588        TCGA-42-2589 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-42-2590        TCGA-42-2593        TCGA-57-1993        TCGA-59-2363 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-59-2372        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 

Clustering(45) Variable = 3p loss
D45V1, survival
                   sevent
clus2                 0   1
  3P LOSS CNV        29  29
  3P LOSS WILD-TYPE 234 255
      3P LOSS CNV 3P LOSS WILD-TYPE 
               58               489 
      3P LOSS CNV 3P LOSS WILD-TYPE 
               29               255 
$`3P LOSS CNV`
TCGA-04-1346 TCGA-04-1347 TCGA-04-1351 TCGA-04-1356 TCGA-04-1365 TCGA-04-1514 
       65.49        63.06        65.46        49.28        76.54        56.55 
TCGA-04-1530 TCGA-04-1542 TCGA-09-0365 TCGA-09-0369 TCGA-09-2050 TCGA-09-2053 
      119.08        84.20         9.47        35.54        71.11        39.75 
TCGA-10-0938 TCGA-13-0730 TCGA-13-0757 TCGA-13-0792 TCGA-13-0890 TCGA-13-0905 
       19.86        17.79        11.18        36.72        67.99        47.84 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1411 TCGA-13-1487 TCGA-13-1492 TCGA-13-1512 
        5.92         6.84         4.21        22.39        73.55         3.09 
TCGA-13-2057 TCGA-23-1024 TCGA-23-1032 TCGA-23-1114 TCGA-24-0968 TCGA-24-0970 
       14.24        15.39         2.24        68.68        19.63        11.64 
TCGA-24-1417 TCGA-24-1464 TCGA-24-1548 TCGA-24-1550 TCGA-24-1846 TCGA-24-1930 
        7.82        12.46        16.21        41.06         4.37        81.11 
TCGA-24-2027 TCGA-24-2288 TCGA-24-2293 TCGA-25-1312 TCGA-25-1633 TCGA-25-1870 
      109.68         0.82        16.64         1.02        60.59        14.93 
TCGA-29-1693 TCGA-29-1763 TCGA-29-1764 TCGA-29-1777 TCGA-30-1855 TCGA-30-1887 
      101.75        66.77        62.93        12.30         2.47        24.26 
TCGA-36-1575 TCGA-36-2530 TCGA-42-2589 TCGA-42-2593 TCGA-57-1992 TCGA-59-2363 
        8.55        33.01         7.56         1.48        28.96         5.39 
TCGA-61-1733 TCGA-61-1917 TCGA-61-2012 TCGA-61-2016 
       31.76        43.43        30.64         1.18 

$`3P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1361 
       18.51        11.87        48.76        21.57        63.98        32.52 
TCGA-04-1362 TCGA-04-1364 TCGA-04-1367 TCGA-04-1371 TCGA-04-1516 TCGA-04-1517 
       44.32        33.67        71.47        82.36        41.59        19.99 
TCGA-04-1525 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
       38.37        29.06        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       64.64        36.23        31.86        47.70        45.34        29.16 
TCGA-09-0366 TCGA-09-0367 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
       57.73        17.95         9.96        38.43        89.33        74.89 
TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 
       41.59        57.57        61.87        55.36        30.48        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
        5.85         3.02         8.55        97.55         6.15         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2051 TCGA-09-2054 TCGA-09-2055 
       35.15         4.50       112.37        63.09        20.91        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
       12.46        54.31        25.91        81.47        18.48        33.24 
TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 
       32.28        11.70         3.88        35.41        35.80        15.12 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
        6.21        24.59        44.55        39.58         2.73        12.39 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0751 TCGA-13-0755 TCGA-13-0758 TCGA-13-0760 
       31.07        15.19        55.17         2.47        11.38        11.54 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       34.06        32.25        31.04        21.40         8.42        38.93 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       28.70        30.35        19.56         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.28         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 
       68.91       107.18        91.40        74.27        66.64        70.39 
TCGA-13-0889 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       61.81        69.01        43.36        57.47        56.15        57.07 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       19.36        47.38        48.33        44.94        44.84        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 
       27.68        34.06        29.98        21.14        14.89        13.81 
TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 
        4.64         6.41         6.08        10.88         6.61         7.36 
TCGA-13-1407 TCGA-13-1410 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
        6.05         4.70         5.33        54.61        87.06        61.71 
TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 
       29.39        98.04        20.68        70.82        82.88        52.44 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       38.17        49.22         4.24        54.31        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 
       13.97        32.84        16.57         4.21         4.41         4.77 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 
        4.14         2.56         3.88        12.23         8.58        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       27.48        25.38        19.07        16.67         2.93         2.66 
TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       47.54        42.51        40.54        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 
        8.81        29.10        18.87        51.35        54.51         3.22 
TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       31.20         4.57        33.30        86.01       129.96         4.27 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 
        6.38        39.09        33.47        58.13         0.53        24.95 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
      115.89        87.48        91.66        77.00        49.84         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        4.70         4.50         7.63        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       22.32        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 
        7.99         7.86         0.76         6.25         6.02         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 
        5.36         4.80        17.36        28.34        19.17        18.67 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 
       43.53         8.55        72.92        45.14       105.99         9.11 
TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
        3.42         1.18        22.19        26.96        57.37        64.27 
TCGA-24-1549 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 
       56.58        51.91        41.39        58.09        88.50        70.62 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 
       39.88        19.53        44.09        45.50        47.70        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 
       10.26        17.23        90.15        88.34        48.33        38.24 
TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1847 TCGA-24-1849 
        8.32         3.48         3.72         3.81        11.28         5.75 
TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 
        5.49         9.80        22.65        30.21        16.41        11.05 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2029 
        4.87       151.99        44.84        58.16        34.82        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
       53.95        18.48        28.18        64.01        44.48        57.07 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 
       36.16         0.79         0.36        47.54        31.63        70.45 
TCGA-24-2281 TCGA-24-2289 TCGA-24-2290 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 
       44.58        67.36        36.23        33.11        55.86        53.26 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 
       26.93        31.99        51.06        37.02         1.02        34.98 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 
       65.00        36.95        33.96         2.99        12.00         2.96 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 
       18.58        18.02        15.78         0.36        20.58         7.86 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1634 TCGA-25-1635 TCGA-25-1871 TCGA-25-1877 
        0.30        56.94        35.54        51.22        24.99        18.05 
TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 
       85.05        13.02        49.05         1.02        38.04         3.02 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 
       12.00        45.01        19.99        42.02         2.96        29.00 
TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1694 
       30.97        26.96        78.87        44.71        47.18        38.53 
TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 
        0.79        33.70        31.17        68.28         0.53        16.90 
TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 
       18.64        59.67        18.25        41.95        29.23        34.62 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 
       17.00        85.68        39.09        31.23        22.98        24.36 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1778 TCGA-29-1781 
       22.52        17.29        12.36        11.84        14.93         8.35 
TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 
        7.20         5.36        34.62        86.17        65.00        62.47 
TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 
       45.11         4.87        42.25        11.84        11.47         9.76 
TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 
       38.07        51.91        36.26        15.68         0.26        48.07 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 
       44.91        34.78         6.08        36.62         1.18        57.57 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 
        6.71        42.51        44.09         2.17        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       21.53        22.85        22.55        30.05        25.74        27.85 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       24.23        24.69        35.05        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.08        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 
       20.52        14.17         6.05        16.14        11.47        14.30 
TCGA-42-2587 TCGA-42-2588 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 
        9.07         9.44         7.46         7.63        24.03        11.38 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 
       21.14         1.74        22.32        25.05        25.02       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 
       80.12        22.32       116.12         9.40        34.39         2.14 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 
       44.78        11.11         8.05        20.94        31.40        18.54 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
       27.88         4.34        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 
        2.43        33.67        43.69         1.41         8.42         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
       11.41        13.02         9.07        34.13        31.30        37.02 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1918 TCGA-61-1919 
       42.48        48.92        56.58        67.73        15.75        38.17 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 
        1.97         5.52        14.50        17.98         3.98        30.61 
TCGA-61-2009 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
       39.85        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
       71.74        61.64        58.39        60.62        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 
        6.48        76.83        20.68        44.52       125.72        22.22 
TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        6.35        31.07         8.58 

      3P LOSS CNV 3P LOSS WILD-TYPE 
             0.82              0.26 
      3P LOSS CNV 3P LOSS WILD-TYPE 
           119.08            180.16 
      3P LOSS CNV 3P LOSS WILD-TYPE 
           23.325            28.340 
[1] "0.8 - 119.1 (23.3)" "0.3 - 180.2 (28.3)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D45V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  3P LOSS CNV             1    58                0
  3P LOSS WILD-TYPE       1   490                2
D45V3, multiclass
                  clus
vv                 3P LOSS CNV 3P LOSS WILD-TYPE
  OMENTUM                    1                 1
  OVARY                     58               490
  PERITONEUM OVARY           0                 2
D45V4, continuous
                   vv
clus                I+II III  IV
  3P LOSS CNV          1  12   6
  3P LOSS WILD-TYPE    3 121  28
D45V5, multiclass
      clus
vv     3P LOSS CNV 3P LOSS WILD-TYPE
  I+II           1                 3
  III           12               121
  IV             6                28
D45V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS CNV          1   58
  3P LOSS WILD-TYPE    2  501
     clus
vv    3P LOSS CNV 3P LOSS WILD-TYPE
  NO            1                 2
  YES          58               501
                   vv
clus                R0 R1 R2
  3P LOSS CNV        2  1  1
  3P LOSS WILD-TYPE 12 25  1
D45V7, multiclass
    clus
vv   3P LOSS CNV 3P LOSS WILD-TYPE
  R0           2                12
  R1           1                25
  R2           1                 1

Clustering(46) Variable = 3q loss
D46V1, survival
                   sevent
clus2                 0   1
  3Q LOSS CNV        14   8
  3Q LOSS WILD-TYPE 249 276
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
               22               525 
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
                8               276 
$`3Q LOSS CNV`
TCGA-04-1351 TCGA-04-1514 TCGA-09-0369 TCGA-09-2050 TCGA-10-0938 TCGA-13-0890 
       65.46        56.55        35.54        71.11        19.86        67.99 
TCGA-13-0905 TCGA-13-1408 TCGA-13-1492 TCGA-13-1512 TCGA-23-1024 TCGA-23-1032 
       47.84         5.92        73.55         3.09        15.39         2.24 
TCGA-24-1550 TCGA-24-1846 TCGA-24-2027 TCGA-24-2288 TCGA-24-2293 TCGA-29-1763 
       41.06         4.37       109.68         0.82        16.64        66.77 
TCGA-29-1777 TCGA-36-1575 TCGA-42-2589 TCGA-61-2012 
       12.30         8.55         7.56        30.64 

$`3Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       63.98        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       71.47        82.36        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
       29.06        84.20        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       64.64        36.23        31.86        47.70        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
        9.47        57.73        17.95         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       74.89        41.59        57.57        61.87        55.36        30.48 
TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 
       17.98         5.85         3.02         8.55        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2051 TCGA-09-2053 
        6.12        35.15         4.50       112.37        63.09        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       20.91        26.93        12.46        54.31        25.91        81.47 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 
       18.48        33.24        32.28        11.70         3.88        35.41 
TCGA-10-0936 TCGA-10-0937 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 
       35.80        15.12         6.21        24.59        44.55        39.58 
TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 
        2.73        12.39        31.07        15.19        17.79        55.17 
TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 
        2.47        11.18        11.38        11.54        34.06        32.25 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 
       31.04        21.40         8.42        38.93        36.72        28.70 
TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 
       30.35        19.56         8.71         7.79         8.12         8.28 
TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.19        43.82        35.28        35.28        13.61        68.91 
TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 
      107.18        91.40        74.27        66.64        70.39        61.81 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       69.01        43.36        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       47.38        48.33        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       34.06        29.98        21.14        14.89        13.81         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
        6.41         6.08        10.88         6.61         7.36         6.05 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        6.84         4.70         4.21         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
       61.71        29.39        98.04        20.68        22.39        70.82 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 
       82.88        52.44        38.17        49.22         4.24        54.31 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       37.61        38.37        13.97        32.84        16.57         4.21 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2057 
        4.41         4.77         4.14         2.56         3.88        14.24 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 
       12.23         8.58        10.78         8.75         6.28        23.05 
TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 
       25.94        26.20        72.20        27.48        25.38        19.07 
TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 
       16.67         2.93         2.66        47.54        42.51        40.54 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       26.83        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 
       51.35        54.51         3.22        31.20        68.68         4.57 
TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 
       33.30        86.01       129.96         4.27         6.38        39.09 
TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 
       33.47        58.13         0.53        24.95       115.89        87.48 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
       91.66        77.00        49.84         2.76         4.70         4.50 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       22.32        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 
        7.82         7.99         7.86         0.76         6.25         6.02 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 
        5.95         5.36         4.80        17.36        28.34        19.17 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 
       18.67        43.53         8.55        72.92        12.46        45.14 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 
      105.99         9.11         3.42         1.18        22.19        26.96 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1551 TCGA-24-1552 
       57.37        64.27        16.21        56.58        51.91        41.39 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 
       58.09        88.50        70.62        39.88        19.53        44.09 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 
       45.50        47.70        25.87        10.26        17.23        90.15 
TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 
       88.34        48.33        38.24         8.32         3.48         3.72 
TCGA-24-1845 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
        3.81        11.28         5.75         5.49         9.80        22.65 
TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 
       30.21        16.41        11.05        81.11         4.87       151.99 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 
       44.84        58.16        34.82        14.43        53.95        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 
       28.18        64.01        44.48        57.07        36.16         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2289 
        0.36        47.54        31.63        70.45        44.58        67.36 
TCGA-24-2290 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 
       36.23        33.11        55.86        53.26         1.02        26.93 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 
       31.99        51.06        37.02         1.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 
       36.95        33.96         2.99        12.00         2.96        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 
       18.02        15.78         0.36        20.58         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 
       56.94        60.59        35.54        51.22        14.93        24.99 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 
       18.05        85.05        13.02        49.05         1.02        38.04 
TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 
        3.02        12.00        45.01        19.99        42.02         2.96 
TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 
       29.00        30.97        26.96        78.87        44.71        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 
      101.75        38.53         0.79        33.70        31.17        68.28 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
        0.53        16.90        18.64        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 
       29.23        34.62        17.00        85.68        62.93        39.09 
TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 
       31.23        22.98        24.36        22.52        17.29        12.36 
TCGA-29-1776 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 
       11.84        14.93         8.35         7.20         5.36        34.62 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 
       86.17        65.00        62.47        45.11         4.87        42.25 
TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 
       11.84        11.47         9.76        38.07        51.91        36.26 
TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 
        2.47        15.68         0.26        48.07        44.91        34.78 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
        6.08        36.62         1.18        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 
       48.79        45.57        30.18        18.77        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       42.51        44.09         2.17        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
       22.85        22.55        30.05        25.74        27.85        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       24.69        35.05        33.01        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.08        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 
       20.52        14.17         6.05        16.14        11.47        14.30 
TCGA-42-2587 TCGA-42-2588 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 
        9.07         9.44         7.46         7.63         1.48        24.03 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 
       11.38        21.14         1.74        22.32        28.96        25.05 
TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 
       25.02       180.16        80.12        22.32       116.12         9.40 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 
       34.39         2.14         5.39        44.78        11.11         8.05 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 
       20.94        31.40        18.54        27.88         4.34        31.76 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       28.47        48.79        44.84        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
       43.69         1.41         8.42         5.79        11.41        13.02 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
        9.07        34.13        31.30        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       56.58        67.73        43.43        15.75        38.17         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 
        5.52        14.50        17.98         3.98        30.61        39.85 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
        1.18        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
       71.74        61.64        58.39        60.62        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 
        6.48        76.83        20.68        44.52       125.72        22.22 
TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        6.35        31.07         8.58 

      3Q LOSS CNV 3Q LOSS WILD-TYPE 
             0.82              0.26 
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
           109.68            180.16 
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
            25.25             28.18 
[1] "0.8 - 109.7 (25.2)" "0.3 - 180.2 (28.2)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D46V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  3Q LOSS CNV             1    22                0
  3Q LOSS WILD-TYPE       1   526                2
D46V3, multiclass
                  clus
vv                 3Q LOSS CNV 3Q LOSS WILD-TYPE
  OMENTUM                    1                 1
  OVARY                     22               526
  PERITONEUM OVARY           0                 2
D46V4, continuous
                   vv
clus                I+II III  IV
  3Q LOSS CNV          0   4   3
  3Q LOSS WILD-TYPE    4 129  31
D46V5, multiclass
      clus
vv     3Q LOSS CNV 3Q LOSS WILD-TYPE
  I+II           0                 4
  III            4               129
  IV             3                31
D46V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS CNV          1   22
  3Q LOSS WILD-TYPE    2  537
     clus
vv    3Q LOSS CNV 3Q LOSS WILD-TYPE
  NO            1                 2
  YES          22               537
                   vv
clus                R0 R1 R2
  3Q LOSS CNV        1  0  0
  3Q LOSS WILD-TYPE 13 26  2
D46V7, multiclass
[1] "Remove cluster labels:" "3Q LOSS CNV"           
clus
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
                1                41 
       TCGA-04-1516        TCGA-04-1644        TCGA-13-0807        TCGA-13-0911 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-29-2414        TCGA-29-2425        TCGA-29-2427 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-2428        TCGA-29-2429        TCGA-29-2431        TCGA-29-2432 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-2434        TCGA-29-2436        TCGA-36-2529        TCGA-36-2530 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2532        TCGA-36-2534        TCGA-36-2537        TCGA-36-2538 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2540        TCGA-36-2542        TCGA-36-2543        TCGA-36-2544 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2545        TCGA-36-2547        TCGA-36-2548        TCGA-36-2549 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2587 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-42-2588        TCGA-42-2590        TCGA-42-2593        TCGA-57-1993 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-2612        TCGA-61-2613 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2614 
"3Q LOSS WILD-TYPE" 

Clustering(47) Variable = 4p loss
D47V1, survival
                   sevent
clus2                 0   1
  4P LOSS CNV       113 135
  4P LOSS WILD-TYPE 150 149
      4P LOSS CNV 4P LOSS WILD-TYPE 
              248               299 
      4P LOSS CNV 4P LOSS WILD-TYPE 
              135               149 
$`4P LOSS CNV`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1338 TCGA-04-1343 TCGA-04-1348 TCGA-04-1350 
       40.24        41.00        46.62        11.87        48.76        63.98 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 
       32.52        44.32        82.36        56.55        41.59        19.99 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1649 TCGA-04-1651 
       29.06        84.20        55.40        48.89        64.64        36.23 
TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0365 TCGA-09-0367 TCGA-09-0369 
       31.86        47.70        45.34         9.47        17.95        35.54 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1669 TCGA-09-1670 TCGA-09-2043 
        9.96        38.43        89.33        30.48        17.98         6.15 
TCGA-09-2044 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 
        6.12       112.37        71.11        63.09        39.75        20.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0933 TCGA-10-0935 TCGA-13-0717 
       81.47        18.48        33.24        11.70        35.41        24.59 
TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 
       12.39        15.19        17.79        55.17         2.47        11.18 
TCGA-13-0760 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0793 TCGA-13-0795 
       11.54        32.25        31.04        21.40        28.70        19.56 
TCGA-13-0801 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0885 TCGA-13-0887 
        8.28        43.82        35.28        35.28        91.40        66.64 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0899 TCGA-13-0900 TCGA-13-0903 TCGA-13-0904 
       61.81        67.99        56.15        57.07        47.38        48.33 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0921 TCGA-13-0924 TCGA-13-1403 
       37.08        27.68        34.06         4.64         6.08        10.88 
TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1487 TCGA-13-1489 
        6.05         5.92         6.84         4.70        22.39        82.88 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 TCGA-13-1500 
       52.44        73.55        49.22        54.31        37.61        13.97 
TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2061 TCGA-20-0990 
        4.14         3.88         3.09        12.23        10.78        25.94 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
       27.48        25.38        19.07         2.93         2.66        47.54 
TCGA-23-1022 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       42.51        49.41         8.81        29.10        18.87         2.24 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1122 
        3.22        31.20        33.30        86.01       129.96        39.09 
TCGA-23-1123 TCGA-23-2072 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-24-0970 
       33.47        24.95        49.84         2.76         4.70        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0982 TCGA-24-1103 TCGA-24-1105 TCGA-24-1413 
       21.80        41.56        22.32        54.08        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1422 TCGA-24-1425 TCGA-24-1426 
        6.38         7.82         7.99         0.76         5.95         5.36 
TCGA-24-1431 TCGA-24-1434 TCGA-24-1463 TCGA-24-1470 TCGA-24-1471 TCGA-24-1548 
       19.17        18.67        72.92         3.42         1.18        16.21 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1555 TCGA-24-1560 TCGA-24-1562 TCGA-24-1567 
       51.91        41.39        88.50        44.09        45.50        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1616 TCGA-24-1842 TCGA-24-1845 TCGA-24-1846 
       90.15        88.34        38.24         8.32         3.81         4.37 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1930 TCGA-24-2020 TCGA-24-2023 TCGA-24-2027 
       22.65        30.21        81.11       151.99        44.84       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2254 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 
       14.43        53.95        57.07        47.54        31.63        70.45 
TCGA-24-2288 TCGA-24-2290 TCGA-24-2293 TCGA-24-2298 TCGA-25-1314 TCGA-25-1316 
        0.82        36.23        16.64        53.26        31.99        37.02 
TCGA-25-1317 TCGA-25-1318 TCGA-25-1322 TCGA-25-1323 TCGA-25-1623 TCGA-25-1627 
        1.02        34.98         2.99        12.00        18.58         0.36 
TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 TCGA-25-1871 TCGA-25-2400 TCGA-25-2404 
        0.30        60.59        35.54        24.99        42.02        29.00 
TCGA-29-1688 TCGA-29-1695 TCGA-29-1697 TCGA-29-1699 TCGA-29-1705 TCGA-29-1762 
       78.87         0.79        31.17         0.53        18.25        85.68 
TCGA-29-1763 TCGA-29-1768 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 
       66.77        31.23        12.30         8.35         7.20         5.36 
TCGA-29-2428 TCGA-29-2434 TCGA-30-1714 TCGA-30-1853 TCGA-30-1856 TCGA-30-1859 
       45.11        11.47        38.07        36.26        15.68        48.07 
TCGA-30-1861 TCGA-30-1866 TCGA-30-1880 TCGA-30-1891 TCGA-31-1950 TCGA-31-1953 
       34.78        36.62        57.57        30.05        18.77         6.71 
TCGA-31-1955 TCGA-31-1959 TCGA-36-1568 TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 
       42.51         2.17        28.73        30.05        25.74        24.23 
TCGA-36-1581 TCGA-36-2532 TCGA-36-2538 TCGA-36-2542 TCGA-36-2543 TCGA-36-2545 
       24.69        29.49        25.08        21.60         2.24        18.31 
TCGA-36-2548 TCGA-36-2551 TCGA-42-2587 TCGA-42-2588 TCGA-42-2591 TCGA-57-1584 
       14.17        16.14         9.07         9.44         7.63        21.14 
TCGA-57-1992 TCGA-59-2350 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
       28.96        22.32        34.39         2.14         5.39        44.78 
TCGA-61-1730 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1740 TCGA-61-1895 
        4.34        28.47        48.79        44.84         2.43         1.41 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1913 
        8.42         5.79        13.02         9.07        34.13        48.92 
TCGA-61-1914 TCGA-61-1917 TCGA-61-1919 TCGA-61-1995 TCGA-61-2003 TCGA-61-2016 
       56.58        43.43        38.17         1.97         3.98         1.18 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2094 TCGA-61-2101 TCGA-61-2109 TCGA-61-2110 
       45.40         4.80        71.74        55.50        20.68        44.52 
TCGA-61-2113 TCGA-61-2613 
       22.22        31.07 

$`4P LOSS WILD-TYPE`
TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 
        1.81        49.15         2.01        18.51        65.49        63.06 
TCGA-04-1349 TCGA-04-1351 TCGA-04-1356 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       21.57        65.46        49.28        33.67        76.54        71.47 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1646 TCGA-04-1648 TCGA-09-0364 TCGA-09-0366 
       38.37       119.08        27.88        28.64        29.16        57.73 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1672 
       74.89        41.59        57.57        61.87        55.36         5.85 
TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2045 TCGA-09-2048 TCGA-09-2055 
        3.02         8.55        97.55        35.15         4.50        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0931 TCGA-10-0934 TCGA-10-0936 
       12.46        54.31        25.91        32.28         3.88        35.80 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 
       15.12        19.86         6.21        44.55        39.58         2.73 
TCGA-13-0726 TCGA-13-0758 TCGA-13-0761 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       31.07        11.38        34.06         8.42        38.93        36.72 
TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0802 TCGA-13-0807 
       30.35         8.71         7.79         8.12         8.19        13.61 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0886 TCGA-13-0888 TCGA-13-0891 TCGA-13-0893 
       68.91       107.18        74.27        70.39        69.01        43.36 
TCGA-13-0897 TCGA-13-0901 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0913 
       57.47        19.36        47.84        44.94        44.84        29.98 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 TCGA-13-1404 TCGA-13-1405 
       21.14        14.89        13.81         6.41         6.61         7.36 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.21         5.33        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 TCGA-13-1494 TCGA-13-1496 TCGA-13-1499 
       98.04        20.68        70.82        38.17         4.24        38.37 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1510 
       32.84        16.57         4.21         4.41         4.77         2.56 
TCGA-13-2057 TCGA-13-2060 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0991 
       14.24         8.58         8.75         6.28        23.05        26.20 
TCGA-20-0996 TCGA-20-1685 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
       72.20        16.67        40.54        15.39        26.83        31.73 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1114 TCGA-23-1116 TCGA-23-1120 TCGA-23-1121 
       51.35        54.51        68.68         4.57         4.27         6.38 
TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
       58.13         0.53       115.89        87.48        91.66        77.00 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0980 TCGA-24-1104 TCGA-24-1419 
        4.50         7.63        19.63         7.66        63.55         7.86 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1435 
        6.25         6.02         4.80        17.36        28.34        43.53 
TCGA-24-1436 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1474 
        8.55        12.46        45.14       105.99         9.11        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 TCGA-24-1553 
       26.96        57.37        64.27        56.58        41.06        58.09 
TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       70.62        39.88        19.53        47.70        25.87        10.26 
TCGA-24-1614 TCGA-24-1843 TCGA-24-1844 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
       48.33         3.48         3.72        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1927 TCGA-24-1928 TCGA-24-2019 TCGA-24-2024 TCGA-24-2026 
        9.80        16.41        11.05         4.87        58.16        34.82 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2260 TCGA-24-2261 
       18.48        28.18        64.01        44.48        36.16         0.79 
TCGA-24-2262 TCGA-24-2281 TCGA-24-2289 TCGA-24-2295 TCGA-24-2297 TCGA-25-1312 
        0.36        44.58        67.36        33.11        55.86         1.02 
TCGA-25-1313 TCGA-25-1315 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1329 
       26.93        51.06        65.00        36.95        33.96         2.96 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1628 TCGA-25-1630 TCGA-25-1632 TCGA-25-1635 
       18.02        15.78        20.58         7.86        56.94        51.22 
TCGA-25-1870 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       14.93        18.05        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2401 
       38.04         3.02        12.00        45.01        19.99         2.96 
TCGA-25-2408 TCGA-25-2409 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 
       30.97        26.96        44.71        47.18       101.75        38.53 
TCGA-29-1696 TCGA-29-1698 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1707 
       33.70        68.28        16.90        18.64        59.67        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1764 TCGA-29-1766 TCGA-29-1769 
       29.23        34.62        17.00        62.93        39.09        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1778 
       24.36        22.52        17.29        12.36        11.84        14.93 
TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2429 TCGA-29-2431 
       34.62        86.17        65.00        62.47         4.87        42.25 
TCGA-29-2432 TCGA-29-2436 TCGA-30-1718 TCGA-30-1855 TCGA-30-1857 TCGA-30-1860 
       11.84         9.76        51.91         2.47         0.26        44.91 
TCGA-30-1862 TCGA-30-1867 TCGA-30-1887 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
        6.08         1.18        24.26        48.79        45.57        30.18 
TCGA-31-1951 TCGA-31-1956 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 
       22.45        44.09        29.06        21.53        22.85        22.55 
TCGA-36-1575 TCGA-36-1578 TCGA-36-2529 TCGA-36-2530 TCGA-36-2534 TCGA-36-2537 
        8.55        27.85        35.05        33.01        29.79        25.91 
TCGA-36-2540 TCGA-36-2544 TCGA-36-2547 TCGA-36-2549 TCGA-36-2552 TCGA-42-2582 
       23.80        20.98        20.52         6.05        11.47        14.30 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1585 
        7.56         7.46         1.48        24.03        11.38         1.74 
TCGA-57-1586 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2351 
       22.32        25.05        25.02       180.16        80.12       116.12 
TCGA-59-2352 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 
        9.40        11.11         8.05        20.94        31.40        18.54 
TCGA-61-1728 TCGA-61-1733 TCGA-61-1738 TCGA-61-1741 TCGA-61-1743 TCGA-61-1901 
       27.88        31.76        35.80        33.67        43.69        11.41 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1915 TCGA-61-1918 TCGA-61-1998 
       31.30        37.02        42.48        67.73        15.75         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2017 
       14.50        17.98        30.61        39.85        30.64        45.96 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 
        4.77        51.72        61.64        58.39        60.62        65.49 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2111 TCGA-61-2612 TCGA-61-2614 
        6.48        76.83       125.72         6.35         8.58 

      4P LOSS CNV 4P LOSS WILD-TYPE 
             0.30              0.26 
      4P LOSS CNV 4P LOSS WILD-TYPE 
           151.99            180.16 
      4P LOSS CNV 4P LOSS WILD-TYPE 
            28.98             26.96 
[1] "0.3 - 152.0 (29.0)" "0.3 - 180.2 (27.0)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
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      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
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      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
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      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D47V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  4P LOSS CNV             2   250                0
  4P LOSS WILD-TYPE       0   298                2
D47V3, multiclass
                  clus
vv                 4P LOSS CNV 4P LOSS WILD-TYPE
  OMENTUM                    2                 0
  OVARY                    250               298
  PERITONEUM OVARY           0                 2
D47V4, continuous
                   vv
clus                I+II III IV
  4P LOSS CNV          1  61 18
  4P LOSS WILD-TYPE    3  72 16
D47V5, multiclass
      clus
vv     4P LOSS CNV 4P LOSS WILD-TYPE
  I+II           1                 3
  III           61                72
  IV            18                16
D47V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS CNV          2  257
  4P LOSS WILD-TYPE    1  302
     clus
vv    4P LOSS CNV 4P LOSS WILD-TYPE
  NO            2                 1
  YES         257               302
                   vv
clus                R0 R1 R2
  4P LOSS CNV        6 10  1
  4P LOSS WILD-TYPE  8 16  1
D47V7, multiclass
    clus
vv   4P LOSS CNV 4P LOSS WILD-TYPE
  R0           6                 8
  R1          10                16
  R2           1                 1

Clustering(48) Variable = 4q loss
D48V1, survival
                   sevent
clus2                 0   1
  4Q LOSS CNV       135 154
  4Q LOSS WILD-TYPE 128 130
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
              289               258 
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
              154               130 
$`4Q LOSS CNV`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1338 TCGA-04-1343 TCGA-04-1348 
       40.24        41.00        49.15        46.62        11.87        48.76 
TCGA-04-1350 TCGA-04-1361 TCGA-04-1362 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 
       63.98        32.52        44.32        71.47        82.36        56.55 
TCGA-04-1516 TCGA-04-1517 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 
       41.59        19.99        29.06        84.20        55.40        48.89 
TCGA-04-1649 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0367 TCGA-09-0369 
       64.64        31.86        47.70        45.34        17.95        35.54 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 TCGA-09-1669 
        9.96        38.43        89.33        74.89        57.57        30.48 
TCGA-09-1670 TCGA-09-1674 TCGA-09-2043 TCGA-09-2044 TCGA-09-2049 TCGA-09-2050 
       17.98         8.55         6.15         6.12       112.37        71.11 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0926 
       63.09        39.75        20.91        26.93        12.46        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0933 TCGA-10-0935 TCGA-10-0937 
       81.47        18.48        33.24        11.70        35.41        15.12 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 
       24.59        44.55        12.39        15.19        17.79        55.17 
TCGA-13-0757 TCGA-13-0760 TCGA-13-0762 TCGA-13-0766 TCGA-13-0793 TCGA-13-0795 
       11.18        11.54        32.25        21.40        28.70        19.56 
TCGA-13-0797 TCGA-13-0801 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0885 
        8.71         8.28        43.82        35.28        35.28        91.40 
TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 TCGA-13-0899 TCGA-13-0903 TCGA-13-0904 
       66.64        61.81        67.99        56.15        47.38        48.33 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0916 TCGA-13-0921 TCGA-13-0924 
       37.08        27.68        34.06        21.14         4.64         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
       10.88         6.61         6.05         5.92         6.84         4.70 
TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1495 TCGA-13-1497 
       22.39        82.88        52.44        73.55        49.22        54.31 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 
       38.37        13.97         4.14         3.88         3.09        12.23 
TCGA-13-2061 TCGA-20-0990 TCGA-20-1683 TCGA-20-1684 TCGA-20-1686 TCGA-20-1687 
       10.78        25.94        25.38        19.07         2.93         2.66 
TCGA-23-1021 TCGA-23-1022 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       47.54        42.51        49.41         8.81        29.10        18.87 
TCGA-23-1032 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1117 
        2.24        54.51         3.22        31.20        68.68        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 TCGA-23-2084 
       86.01       129.96        39.09        33.47        24.95        49.84 
TCGA-23-2641 TCGA-23-2643 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0982 
        2.76         4.70        11.64        21.80        41.56        22.32 
TCGA-24-1103 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       54.08        47.41         6.31         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 TCGA-24-1431 
        7.86         0.76         6.25         5.95         5.36        19.17 
TCGA-24-1434 TCGA-24-1463 TCGA-24-1470 TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 
       18.67        72.92         3.42         1.18        26.96        57.37 
TCGA-24-1548 TCGA-24-1551 TCGA-24-1552 TCGA-24-1555 TCGA-24-1560 TCGA-24-1562 
       16.21        51.91        41.39        88.50        44.09        45.50 
TCGA-24-1563 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1616 TCGA-24-1842 
       47.70        17.23        90.15        88.34        38.24         8.32 
TCGA-24-1845 TCGA-24-1846 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1928 
        3.81         4.37         5.75         9.80        22.65        11.05 
TCGA-24-1930 TCGA-24-2020 TCGA-24-2023 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
       81.11       151.99        44.84       109.68        14.43        53.95 
TCGA-24-2254 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2288 TCGA-24-2290 
       57.07        47.54        31.63        70.45         0.82        36.23 
TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1314 
       16.64        33.11        55.86        53.26         1.02        31.99 
TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1322 TCGA-25-1323 
       51.06        37.02         1.02        34.98         2.99        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1627 TCGA-25-1630 TCGA-25-1631 
        2.96        18.58        18.02         0.36         7.86         0.30 
TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-2042 TCGA-25-2391 
       60.59        35.54        14.93        24.99        13.02        49.05 
TCGA-25-2400 TCGA-25-2404 TCGA-25-2408 TCGA-29-1688 TCGA-29-1695 TCGA-29-1697 
       42.02        29.00        30.97        78.87         0.79        31.17 
TCGA-29-1698 TCGA-29-1705 TCGA-29-1762 TCGA-29-1763 TCGA-29-1769 TCGA-29-1776 
       68.28        18.25        85.68        66.77        22.98        11.84 
TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-2428 TCGA-29-2434 
       12.30         8.35         7.20         5.36        45.11        11.47 
TCGA-30-1714 TCGA-30-1853 TCGA-30-1856 TCGA-30-1859 TCGA-30-1861 TCGA-30-1866 
       38.07        36.26        15.68        48.07        34.78        36.62 
TCGA-30-1880 TCGA-30-1891 TCGA-31-1946 TCGA-31-1950 TCGA-31-1953 TCGA-31-1955 
       57.57        30.05        30.18        18.77         6.71        42.51 
TCGA-31-1959 TCGA-36-1568 TCGA-36-1570 TCGA-36-1571 TCGA-36-1576 TCGA-36-1577 
        2.17        28.73        21.53        22.85        30.05        25.74 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2538 
       24.23        24.69        35.05        33.01        29.49        25.08 
TCGA-36-2543 TCGA-36-2545 TCGA-36-2548 TCGA-36-2551 TCGA-42-2587 TCGA-42-2588 
        2.24        18.31        14.17        16.14         9.07         9.44 
TCGA-42-2589 TCGA-42-2591 TCGA-42-2593 TCGA-57-1584 TCGA-57-1992 TCGA-59-2350 
        7.56         7.63         1.48        21.14        28.96        22.32 
TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 
        2.14         5.39        44.78         4.34        31.76        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1740 TCGA-61-1741 TCGA-61-1899 TCGA-61-1900 
       48.79        44.84         2.43        33.67         8.42         5.79 
TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1914 TCGA-61-1917 
       13.02         9.07        34.13        31.30        56.58        43.43 
TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-2003 TCGA-61-2009 TCGA-61-2016 
       15.75        38.17         1.97         3.98        39.85         1.18 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2094 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
       45.40         4.80        71.74        60.62        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2113 TCGA-61-2613 
        6.48        76.83        20.68        44.52        22.22        31.07 
TCGA-61-2614 
        8.58 

$`4Q LOSS WILD-TYPE`
TCGA-04-1335 TCGA-04-1337 TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1349 
        1.81         2.01        18.51        65.49        63.06        21.57 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1364 TCGA-04-1365 TCGA-04-1525 TCGA-04-1530 
       65.46        49.28        33.67        76.54        38.37       119.08 
TCGA-04-1646 TCGA-04-1648 TCGA-04-1651 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 
       27.88        28.64        36.23        29.16         9.47        57.73 
TCGA-09-1665 TCGA-09-1667 TCGA-09-1668 TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 
       41.59        61.87        55.36         5.85         3.02        97.55 
TCGA-09-2045 TCGA-09-2048 TCGA-10-0925 TCGA-10-0931 TCGA-10-0934 TCGA-10-0936 
       35.15         4.50        54.31        32.28         3.88        35.80 
TCGA-10-0938 TCGA-13-0714 TCGA-13-0723 TCGA-13-0724 TCGA-13-0726 TCGA-13-0755 
       19.86         6.21        39.58         2.73        31.07         2.47 
TCGA-13-0758 TCGA-13-0761 TCGA-13-0764 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       11.38        34.06        31.04         8.42        38.93        36.72 
TCGA-13-0794 TCGA-13-0799 TCGA-13-0800 TCGA-13-0802 TCGA-13-0807 TCGA-13-0883 
       30.35         7.79         8.12         8.19        13.61        68.91 
TCGA-13-0884 TCGA-13-0886 TCGA-13-0888 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 
      107.18        74.27        70.39        69.01        43.36        57.47 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0913 
       57.07        19.36        47.84        44.94        44.84        29.98 
TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 TCGA-13-1405 TCGA-13-1411 TCGA-13-1412 
       14.89        13.81         6.41         7.36         4.21         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
       54.61        87.06        61.71        29.39        98.04        20.68 
TCGA-13-1488 TCGA-13-1494 TCGA-13-1496 TCGA-13-1498 TCGA-13-1501 TCGA-13-1504 
       70.82        38.17         4.24        37.61        32.84        16.57 
TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1510 TCGA-13-2057 TCGA-13-2060 
        4.21         4.41         4.77         2.56        14.24         8.58 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 
        8.75         6.28        23.05        26.20        72.20        27.48 
TCGA-20-1685 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1109 
       16.67        40.54        15.39        26.83        31.73        51.35 
TCGA-23-1116 TCGA-23-1120 TCGA-23-1121 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 
        4.57         4.27         6.38        58.13         0.53       115.89 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
       87.48        91.66        77.00         4.50         7.63        19.63 
TCGA-24-0980 TCGA-24-1104 TCGA-24-1424 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 
        7.66        63.55         6.02         4.80        17.36        28.34 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 
       43.53         8.55        12.46        45.14       105.99         9.11 
TCGA-24-1474 TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 TCGA-24-1553 TCGA-24-1556 
       22.19        64.27        56.58        41.06        58.09        70.62 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1564 TCGA-24-1565 TCGA-24-1614 TCGA-24-1843 
       39.88        19.53        25.87        10.26        48.33         3.48 
TCGA-24-1844 TCGA-24-1847 TCGA-24-1850 TCGA-24-1924 TCGA-24-1927 TCGA-24-2019 
        3.72        11.28         5.49        30.21        16.41         4.87 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
       58.16        34.82        18.48        28.18        64.01        44.48 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2281 TCGA-24-2289 TCGA-25-1313 
       36.16         0.79         0.36        44.58        67.36        26.93 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1626 TCGA-25-1628 TCGA-25-1632 
       65.00        36.95        33.96        15.78        20.58        56.94 
TCGA-25-1635 TCGA-25-1877 TCGA-25-1878 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 
       51.22        18.05        85.05         1.02        38.04         3.02 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2401 TCGA-25-2409 TCGA-29-1690 
       12.00        45.01        19.99         2.96        26.96        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1699 TCGA-29-1701 
       47.18       101.75        38.53        33.70         0.53        16.90 
TCGA-29-1702 TCGA-29-1703 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       18.64        59.67        41.95        29.23        34.62        17.00 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 
       62.93        39.09        31.23        24.36        22.52        17.29 
TCGA-29-1775 TCGA-29-1778 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 
       12.36        14.93        34.62        86.17        65.00        62.47 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2436 TCGA-30-1718 TCGA-30-1855 
        4.87        42.25        11.84         9.76        51.91         2.47 
TCGA-30-1857 TCGA-30-1860 TCGA-30-1862 TCGA-30-1867 TCGA-30-1887 TCGA-30-1892 
        0.26        44.91         6.08         1.18        24.26        48.79 
TCGA-31-1944 TCGA-31-1951 TCGA-31-1956 TCGA-36-1569 TCGA-36-1574 TCGA-36-1575 
       45.57        22.45        44.09        29.06        22.55         8.55 
TCGA-36-1578 TCGA-36-2534 TCGA-36-2537 TCGA-36-2540 TCGA-36-2542 TCGA-36-2544 
       27.85        29.79        25.91        23.80        21.60        20.98 
TCGA-36-2547 TCGA-36-2549 TCGA-36-2552 TCGA-42-2582 TCGA-42-2590 TCGA-57-1582 
       20.52         6.05        11.47        14.30         7.46        24.03 
TCGA-57-1583 TCGA-57-1585 TCGA-57-1586 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 
       11.38         1.74        22.32        25.05        25.02       180.16 
TCGA-59-2349 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-61-1721 TCGA-61-1722 
       80.12       116.12         9.40        34.39        11.11         8.05 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1738 TCGA-61-1743 
       20.94        31.40        18.54        27.88        35.80        43.69 
TCGA-61-1895 TCGA-61-1901 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1915 
        1.41        11.41        37.02        42.48        48.92        67.73 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 TCGA-61-2012 TCGA-61-2017 
        5.52        14.50        17.98        30.61        30.64        45.96 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2095 TCGA-61-2096 TCGA-61-2111 TCGA-61-2612 
        4.77        51.72        61.64        58.39       125.72         6.35 

      4Q LOSS CNV 4Q LOSS WILD-TYPE 
             0.30              0.26 
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
           151.99            180.16 
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
            28.70             27.88 
[1] "0.3 - 152.0 (28.7)" "0.3 - 180.2 (27.9)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
[1] "hr=" "1.1"
D48V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  4Q LOSS CNV             2   290                1
  4Q LOSS WILD-TYPE       0   258                1
D48V3, multiclass
                  clus
vv                 4Q LOSS CNV 4Q LOSS WILD-TYPE
  OMENTUM                    2                 0
  OVARY                    290               258
  PERITONEUM OVARY           1                 1
D48V4, continuous
                   vv
clus                I+II III IV
  4Q LOSS CNV          1  71 19
  4Q LOSS WILD-TYPE    3  62 15
D48V5, multiclass
      clus
vv     4Q LOSS CNV 4Q LOSS WILD-TYPE
  I+II           1                 3
  III           71                62
  IV            19                15
D48V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS CNV          2  298
  4Q LOSS WILD-TYPE    1  261
     clus
vv    4Q LOSS CNV 4Q LOSS WILD-TYPE
  NO            2                 1
  YES         298               261
                   vv
clus                R0 R1 R2
  4Q LOSS CNV        7 12  2
  4Q LOSS WILD-TYPE  7 14  0
D48V7, multiclass
    clus
vv   4Q LOSS CNV 4Q LOSS WILD-TYPE
  R0           7                 7
  R1          12                14
  R2           2                 0

Clustering(49) Variable = 5p loss
D49V1, survival
                   sevent
clus2                 0   1
  5P LOSS CNV        32  48
  5P LOSS WILD-TYPE 231 236
      5P LOSS CNV 5P LOSS WILD-TYPE 
               80               467 
      5P LOSS CNV 5P LOSS WILD-TYPE 
               48               236 
$`5P LOSS CNV`
TCGA-04-1332 TCGA-04-1336 TCGA-04-1338 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 
       41.00        49.15        46.62        65.46        49.28        32.52 
TCGA-04-1371 TCGA-04-1648 TCGA-09-0364 TCGA-09-0365 TCGA-09-1669 TCGA-09-2044 
       82.36        28.64        29.16         9.47        30.48         6.12 
TCGA-09-2049 TCGA-10-0938 TCGA-13-0714 TCGA-13-0761 TCGA-13-0803 TCGA-13-0804 
      112.37        19.86         6.21        34.06        43.82        35.28 
TCGA-13-0805 TCGA-13-0885 TCGA-13-0893 TCGA-13-0920 TCGA-13-1405 TCGA-13-1412 
       35.28        91.40        43.36        13.81         7.36         5.33 
TCGA-13-1491 TCGA-13-1496 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-20-1683 
       52.44         4.24        14.24        12.23         8.58        25.38 
TCGA-23-1022 TCGA-23-1028 TCGA-23-1109 TCGA-23-1114 TCGA-23-1123 TCGA-23-2072 
       42.51        49.41        51.35        68.68        33.47        24.95 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1466 TCGA-24-1548 TCGA-24-1558 TCGA-24-1567 
       28.34        19.17        45.14        16.21        19.53        17.23 
TCGA-24-1614 TCGA-24-1843 TCGA-24-1920 TCGA-24-2019 TCGA-24-2254 TCGA-24-2261 
       48.33         3.48         9.80         4.87        57.07         0.79 
TCGA-24-2271 TCGA-24-2293 TCGA-25-1312 TCGA-25-1313 TCGA-25-1317 TCGA-25-1323 
       31.63        16.64         1.02        26.93         1.02        12.00 
TCGA-25-1633 TCGA-25-1635 TCGA-25-2398 TCGA-25-2400 TCGA-29-1702 TCGA-29-1711 
       60.59        51.22        45.01        42.02        18.64        34.62 
TCGA-29-1762 TCGA-29-1778 TCGA-29-1783 TCGA-29-2414 TCGA-30-1855 TCGA-30-1859 
       85.68        14.93         7.20        86.17         2.47        48.07 
TCGA-30-1861 TCGA-30-1867 TCGA-31-1953 TCGA-31-1959 TCGA-36-1575 TCGA-36-2547 
       34.78         1.18         6.71         2.17         8.55        20.52 
TCGA-59-2348 TCGA-59-2352 TCGA-61-1743 TCGA-61-1906 TCGA-61-1907 TCGA-61-1998 
      180.16         9.40        43.69        34.13        31.30         5.52 
TCGA-61-2102 TCGA-61-2104 
        6.48        76.83 

$`5P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1337 TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 
       40.24         1.81         2.01        18.51        11.87        65.49 
TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1362 TCGA-04-1364 
       63.06        48.76        21.57        63.98        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 
       76.54        71.47        56.55        41.59        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
      119.08        29.06        84.20        55.40        48.89        27.88 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0366 
       64.64        36.23        31.86        47.70        45.34        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
       17.95        35.54         9.96        38.43        89.33        74.89 
TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1670 TCGA-09-1672 
       41.59        57.57        61.87        55.36        17.98         5.85 
TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2045 TCGA-09-2048 
        3.02         8.55        97.55         6.15        35.15         4.50 
TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 
       71.11        63.09        39.75        20.91        26.93        12.46 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 
       54.31        25.91        81.47        18.48        33.24        32.28 
TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-13-0717 
       11.70         3.88        35.41        35.80        15.12        24.59 
TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 
       44.55        39.58         2.73        12.39        31.07        15.19 
TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 
       17.79        55.17         2.47        11.18        11.38        11.54 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       32.25        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       28.70        30.35        19.56         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0886 
        8.28         8.19        13.61        68.91       107.18        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 
       66.64        70.39        61.81        67.99        69.01        57.47 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 
       56.15        57.07        19.36        47.38        48.33        47.84 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 
       44.94        44.84        37.08        27.68        34.06        29.98 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       21.14        14.89         4.64         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 
        6.61         6.05         5.92         6.84         4.70         4.21 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
       54.61        87.06        61.71        29.39        98.04        20.68 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 
       22.39        70.82        82.88        73.55        38.17        49.22 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
       54.31        37.61        38.37        13.97        32.84        16.57 
TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
        4.21         4.41         4.77         4.14         2.56         3.88 
TCGA-13-1512 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 
        3.09        10.78         8.75         6.28        23.05        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 
       26.20        72.20        27.48        19.07        16.67         2.93 
TCGA-20-1687 TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
        2.66        47.54        40.54        15.39        26.83        31.73 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1110 TCGA-23-1111 
        8.81        29.10        18.87         2.24        54.51         3.22 
TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       31.20         4.57        33.30        86.01       129.96         4.27 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2078 
        6.38        39.09        58.13         0.53       115.89        87.48 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
       91.66        77.00        49.84         2.76         4.70         4.50 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       22.32        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 
        7.82         7.99         7.86         0.76         6.25         6.02 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1434 TCGA-24-1435 
        5.95         5.36         4.80        17.36        18.67        43.53 
TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
        8.55        72.92        12.46       105.99         9.11         3.42 
TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 
        1.18        22.19        26.96        57.37        64.27        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 
       41.06        51.91        41.39        58.09        88.50        70.62 
TCGA-24-1557 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       39.88        44.09        45.50        47.70        25.87        10.26 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1616 TCGA-24-1842 TCGA-24-1844 TCGA-24-1845 
       90.15        88.34        38.24         8.32         3.72         3.81 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1923 TCGA-24-1924 
        4.37        11.28         5.75         5.49        22.65        30.21 
TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       16.41        11.05        81.11       151.99        44.84        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 
       34.82       109.68        14.43        53.95        18.48        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2260 TCGA-24-2262 TCGA-24-2267 TCGA-24-2280 
       64.01        44.48        36.16         0.36        47.54        70.45 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2295 TCGA-24-2297 
       44.58         0.82        67.36        36.23        33.11        55.86 
TCGA-24-2298 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 TCGA-25-1319 
       53.26        31.99        51.06        37.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 
       36.95        33.96         2.99         2.96        18.58        18.02 
TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 
       15.78         0.36        20.58         7.86         0.30        56.94 
TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
       35.54        14.93        24.99        18.05        85.05        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2399 
       49.05         1.02        38.04         3.02        12.00        19.99 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
        2.96        29.00        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 
       47.18       101.75        38.53         0.79        33.70        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
       68.28         0.53        16.90        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1761 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 
       29.23        17.00        66.77        62.93        39.09        31.23 
TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 
       22.98        24.36        22.52        17.29        12.36        11.84 
TCGA-29-1777 TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 TCGA-29-2425 TCGA-29-2427 
       12.30         8.35         5.36        34.62        65.00        62.47 
TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 
       45.11         4.87        42.25        11.84        11.47         9.76 
TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1856 TCGA-30-1857 TCGA-30-1860 
       38.07        51.91        36.26        15.68         0.26        44.91 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
        6.08        36.62        57.57        24.26        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1955 TCGA-31-1956 
       45.57        30.18        18.77        22.45        42.51        44.09 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 
       28.73        29.06        21.53        22.85        22.55        30.05 
TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 
       25.74        27.85        24.23        24.69        35.05        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 
       29.49        29.79        25.91        25.08        23.80        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 
        2.24        20.98        18.31        14.17         6.05        16.14 
TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       11.47        14.30         9.07         9.44         7.56         7.46 
TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 
        7.63         1.48        24.03        11.38        21.14         1.74 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2349 TCGA-59-2350 
       22.32        28.96        25.05        25.02        80.12        22.32 
TCGA-59-2351 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 
      116.12        34.39         2.14         5.39        44.78        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 
        8.05        20.94        31.40        18.54        27.88         4.34 
TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
       31.76        28.47        48.79        44.84        35.80         2.43 
TCGA-61-1741 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
       33.67         1.41         8.42         5.79        11.41        13.02 
TCGA-61-1904 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 
        9.07        37.02        42.48        48.92        56.58        67.73 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-2000 TCGA-61-2002 
       43.43        15.75        38.17         1.97        14.50        17.98 
TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 
        3.98        30.61        39.85        30.64         1.18        45.96 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.40         4.80         4.77        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2109 TCGA-61-2110 
       58.39        60.62        65.49        55.50        20.68        44.52 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
      125.72        22.22         6.35        31.07         8.58 

      5P LOSS CNV 5P LOSS WILD-TYPE 
             0.79              0.26 
      5P LOSS CNV 5P LOSS WILD-TYPE 
           180.16            151.99 
      5P LOSS CNV 5P LOSS WILD-TYPE 
            28.90             27.88 
[1] "0.8 - 180.2 (28.9)" "0.3 - 152.0 (27.9)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5P LOSS WILD-TYPE"       "5P LOSS CNV"       "5P LOSS CNV"       "5P LOSS CNV" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5P LOSS WILD-TYPE"       "5P LOSS CNV"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV"       "5P LOSS CNV" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
      "5P LOSS CNV"       "5P LOSS CNV"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"5P LOSS WILD-TYPE"       "5P LOSS CNV"       "5P LOSS CNV"       "5P LOSS CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV"       "5P LOSS CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
      "5P LOSS CNV" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "5P LOSS CNV" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
      "5P LOSS CNV" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "5P LOSS CNV"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV"       "5P LOSS CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5P LOSS WILD-TYPE"       "5P LOSS CNV"       "5P LOSS CNV"       "5P LOSS CNV" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5P LOSS WILD-TYPE"       "5P LOSS CNV"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV"       "5P LOSS CNV" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
      "5P LOSS CNV"       "5P LOSS CNV"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"5P LOSS WILD-TYPE"       "5P LOSS CNV"       "5P LOSS CNV"       "5P LOSS CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV"       "5P LOSS CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
      "5P LOSS CNV" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "5P LOSS CNV" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
      "5P LOSS CNV" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "5P LOSS CNV"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV"       "5P LOSS CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5P LOSS WILD-TYPE"       "5P LOSS CNV"       "5P LOSS CNV"       "5P LOSS CNV" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5P LOSS WILD-TYPE"       "5P LOSS CNV"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV"       "5P LOSS CNV" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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      "5P LOSS CNV"       "5P LOSS CNV"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"       "5P LOSS CNV"       "5P LOSS CNV"       "5P LOSS CNV" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV"       "5P LOSS CNV" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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      "5P LOSS CNV" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
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      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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      "5P LOSS CNV" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
      "5P LOSS CNV" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
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      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "5P LOSS CNV"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV"       "5P LOSS CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D49V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  5P LOSS CNV             1    81                0
  5P LOSS WILD-TYPE       1   467                2
D49V3, multiclass
                  clus
vv                 5P LOSS CNV 5P LOSS WILD-TYPE
  OMENTUM                    1                 1
  OVARY                     81               467
  PERITONEUM OVARY           0                 2
D49V4, continuous
                   vv
clus                I+II III  IV
  5P LOSS CNV          1  18   2
  5P LOSS WILD-TYPE    3 115  32
D49V5, multiclass
      clus
vv     5P LOSS CNV 5P LOSS WILD-TYPE
  I+II           1                 3
  III           18               115
  IV             2                32
D49V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS CNV          0   83
  5P LOSS WILD-TYPE    3  476
     clus
vv    5P LOSS CNV 5P LOSS WILD-TYPE
  NO            0                 3
  YES          83               476
                   vv
clus                R0 R1 R2
  5P LOSS CNV        1  1  0
  5P LOSS WILD-TYPE 13 25  2
D49V7, multiclass
[1] "Remove cluster labels:" "5P LOSS CNV"           
clus
      5P LOSS CNV 5P LOSS WILD-TYPE 
                2                40 
       TCGA-04-1516        TCGA-04-1644        TCGA-13-0807        TCGA-13-0911 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-29-2425        TCGA-29-2427        TCGA-29-2428 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-2429        TCGA-29-2431        TCGA-29-2432        TCGA-29-2434 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-2436        TCGA-36-2529        TCGA-36-2530        TCGA-36-2532 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2534        TCGA-36-2537        TCGA-36-2538        TCGA-36-2540 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2542        TCGA-36-2543        TCGA-36-2544        TCGA-36-2545 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2548        TCGA-36-2549        TCGA-36-2551        TCGA-36-2552 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-42-2582        TCGA-42-2587        TCGA-42-2588        TCGA-42-2589 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-42-2590        TCGA-42-2593        TCGA-57-1993        TCGA-59-2363 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-59-2372        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 

Clustering(50) Variable = 5q loss
D50V1, survival
                   sevent
clus2                 0   1
  5Q LOSS CNV        78  86
  5Q LOSS WILD-TYPE 185 198
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
              164               383 
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
               86               198 
$`5Q LOSS CNV`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1338 TCGA-04-1350 TCGA-04-1351 
       40.24        41.00        49.15        46.62        63.98        65.46 
TCGA-04-1356 TCGA-04-1361 TCGA-04-1371 TCGA-04-1648 TCGA-04-1649 TCGA-09-0364 
       49.28        32.52        82.36        28.64        64.64        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0369 TCGA-09-1669 TCGA-09-2043 TCGA-09-2044 
        9.47        57.73        35.54        30.48         6.15         6.12 
TCGA-09-2049 TCGA-09-2054 TCGA-10-0927 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
      112.37        20.91        81.47        19.86         6.21        24.59 
TCGA-13-0723 TCGA-13-0730 TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 TCGA-13-0766 
       39.58        17.79        11.54        34.06        31.04        21.40 
TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 
       38.93        28.70        30.35         8.19        43.82        35.28 
TCGA-13-0885 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0899 TCGA-13-0901 
       91.40        67.99        69.01        43.36        56.15        19.36 
TCGA-13-0904 TCGA-13-0906 TCGA-13-0916 TCGA-13-0920 TCGA-13-1405 TCGA-13-1407 
       48.33        44.94        21.14        13.81         7.36         6.05 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1491 TCGA-13-1496 TCGA-13-1497 TCGA-13-1505 
        4.21         5.33        52.44         4.24        54.31         4.21 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-20-0990 TCGA-20-1684 TCGA-20-1686 
       14.24        12.23         8.58        25.94        19.07         2.93 
TCGA-23-1022 TCGA-23-1028 TCGA-23-1030 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
       42.51        49.41        29.10         2.24        51.35        54.51 
TCGA-23-1113 TCGA-23-1114 TCGA-23-1118 TCGA-23-1119 TCGA-23-1122 TCGA-23-1123 
       31.20        68.68        86.01       129.96        39.09        33.47 
TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 TCGA-23-2643 TCGA-24-1419 TCGA-24-1424 
       58.13        24.95       115.89         4.70         7.86         6.02 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1466 TCGA-24-1467 TCGA-24-1548 TCGA-24-1549 
       28.34        19.17        45.14       105.99        16.21        56.58 
TCGA-24-1558 TCGA-24-1567 TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 TCGA-24-1924 
       19.53        17.23        48.33        38.24         3.48        30.21 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2026 TCGA-24-2030 TCGA-24-2254 TCGA-24-2260 
        4.87       151.99        34.82        53.95        57.07        36.16 
TCGA-24-2261 TCGA-24-2271 TCGA-24-2280 TCGA-24-2293 TCGA-24-2295 TCGA-25-1312 
        0.79        31.63        70.45        16.64        33.11         1.02 
TCGA-25-1313 TCGA-25-1315 TCGA-25-1317 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
       26.93        51.06         1.02        33.96         2.99        12.00 
TCGA-25-1633 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-2396 TCGA-25-2398 
       60.59        51.22        14.93        24.99         3.02        45.01 
TCGA-25-2400 TCGA-25-2404 TCGA-29-1695 TCGA-29-1701 TCGA-29-1702 TCGA-29-1711 
       42.02        29.00         0.79        16.90        18.64        34.62 
TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 TCGA-29-1775 TCGA-29-1778 TCGA-29-1783 
       85.68        62.93        39.09        12.36        14.93         7.20 
TCGA-29-1784 TCGA-29-2428 TCGA-30-1718 TCGA-30-1855 TCGA-30-1859 TCGA-30-1861 
        5.36        45.11        51.91         2.47        48.07        34.78 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1887 TCGA-31-1953 TCGA-31-1955 TCGA-31-1959 
       36.62         1.18        24.26         6.71        42.51         2.17 
TCGA-36-1575 TCGA-36-2537 TCGA-36-2538 TCGA-36-2547 TCGA-57-1582 TCGA-57-1583 
        8.55        25.91        25.08        20.52        24.03        11.38 
TCGA-57-1992 TCGA-57-1994 TCGA-59-2348 TCGA-59-2351 TCGA-59-2352 TCGA-61-1724 
       28.96        25.02       180.16       116.12         9.40        20.94 
TCGA-61-1728 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1906 TCGA-61-1907 
       27.88        43.69         1.41         8.42        34.13        31.30 
TCGA-61-1917 TCGA-61-1998 TCGA-61-2008 TCGA-61-2012 TCGA-61-2088 TCGA-61-2097 
       43.43         5.52        30.61        30.64         4.77        60.62 
TCGA-61-2102 TCGA-61-2104 
        6.48        76.83 

$`5Q LOSS WILD-TYPE`
TCGA-04-1335 TCGA-04-1337 TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 
        1.81         2.01        18.51        11.87        65.49        63.06 
TCGA-04-1348 TCGA-04-1349 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       48.76        21.57        44.32        33.67        76.54        71.47 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 
       56.55        41.59        19.99        38.37       119.08        29.06 
TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1651 TCGA-04-1652 
       84.20        55.40        48.89        27.88        36.23        31.86 
TCGA-04-1654 TCGA-04-1655 TCGA-09-0367 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       47.70        45.34        17.95         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1670 
       74.89        41.59        57.57        61.87        55.36        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2045 TCGA-09-2048 
        5.85         3.02         8.55        97.55        35.15         4.50 
TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       71.11        63.09        39.75        26.93        12.46        54.31 
TCGA-10-0926 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       25.91        18.48        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 
       35.41        35.80        15.12        44.55         2.73        12.39 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       31.07        15.19        55.17         2.47        11.18        11.38 
TCGA-13-0762 TCGA-13-0768 TCGA-13-0792 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       32.25         8.42        36.72        19.56         8.71         7.79 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 
        8.12         8.28        35.28        13.61        68.91       107.18 
TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0897 TCGA-13-0900 
       74.27        66.64        70.39        61.81        57.47        57.07 
TCGA-13-0903 TCGA-13-0905 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       47.38        47.84        44.84        37.08        27.68        34.06 
TCGA-13-0913 TCGA-13-0919 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       29.98        14.89         4.64         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1477 TCGA-13-1481 
        6.61         5.92         6.84         4.70        54.61        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
       61.71        29.39        98.04        20.68        22.39        70.82 
TCGA-13-1489 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1498 TCGA-13-1499 
       82.88        73.55        38.17        49.22        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       13.97        32.84        16.57         4.41         4.77         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
        2.56         3.88         3.09        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1685 
       23.05        26.20        72.20        27.48        25.38        16.67 
TCGA-20-1687 TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
        2.66        47.54        40.54        15.39        26.83        31.73 
TCGA-23-1029 TCGA-23-1031 TCGA-23-1111 TCGA-23-1116 TCGA-23-1117 TCGA-23-1120 
        8.81        18.87         3.22         4.57        33.30         4.27 
TCGA-23-1121 TCGA-23-1809 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 
        6.38         0.53        87.48        91.66        77.00        49.84 
TCGA-23-2641 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        2.76         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       41.56         7.66        22.32        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1422 TCGA-24-1423 
        6.31         6.38         7.82         7.99         0.76         6.25 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1434 TCGA-24-1435 
        5.95         5.36         4.80        17.36        18.67        43.53 
TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 
        8.55        72.92        12.46         9.11         3.42         1.18 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1550 TCGA-24-1551 
       22.19        26.96        57.37        64.27        41.06        51.91 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1560 
       41.39        58.09        88.50        70.62        39.88        44.09 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 TCGA-24-1604 
       45.50        47.70        25.87        10.26        90.15        88.34 
TCGA-24-1842 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 
        8.32         3.72         3.81         4.37        11.28         5.75 
TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        5.49         9.80        22.65        16.41        11.05        81.11 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 TCGA-24-2033 TCGA-24-2035 
       44.84        58.16       109.68        14.43        18.48        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2262 TCGA-24-2267 TCGA-24-2281 TCGA-24-2288 
       64.01        44.48         0.36        47.54        44.58         0.82 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2297 TCGA-24-2298 TCGA-25-1314 TCGA-25-1316 
       67.36        36.23        55.86        53.26        31.99        37.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 
       34.98        65.00        36.95         2.96        18.58        18.02 
TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 
       15.78         0.36        20.58         7.86         0.30        56.94 
TCGA-25-1634 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       35.54        18.05        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2397 TCGA-25-2399 TCGA-25-2401 TCGA-25-2408 TCGA-25-2409 
       38.04        12.00        19.99         2.96        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 
       78.87        44.71        47.18       101.75        38.53        33.70 
TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
       31.17        68.28         0.53        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1761 TCGA-29-1763 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 
       29.23        17.00        66.77        31.23        22.98        24.36 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1785 
       22.52        17.29        11.84        12.30         8.35        34.62 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
       86.17        65.00        62.47         4.87        42.25        11.84 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1853 TCGA-30-1856 TCGA-30-1857 
       11.47         9.76        38.07        36.26        15.68         0.26 
TCGA-30-1860 TCGA-30-1862 TCGA-30-1880 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 
       44.91         6.08        57.57        30.05        48.79        45.57 
TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 
       30.18        18.77        22.45        44.09        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       21.53        22.85        22.55        30.05        25.74        27.85 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       24.23        24.69        35.05        33.01        29.49        29.79 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2548 
       23.80        21.60         2.24        20.98        18.31        14.17 
TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 
        6.05        16.14        11.47        14.30         9.07         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1584 TCGA-57-1585 
        7.56         7.46         7.63         1.48        21.14         1.74 
TCGA-57-1586 TCGA-57-1993 TCGA-59-2349 TCGA-59-2350 TCGA-59-2354 TCGA-59-2355 
       22.32        25.05        80.12        22.32        34.39         2.14 
TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1725 TCGA-61-1727 
        5.39        44.78        11.11         8.05        31.40        18.54 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
        4.34        31.76        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
        2.43        33.67         5.79        11.41        13.02         9.07 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1918 
       37.02        42.48        48.92        56.58        67.73        15.75 
TCGA-61-1919 TCGA-61-1995 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2009 
       38.17         1.97        14.50        17.98         3.98        39.85 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2092 TCGA-61-2094 
        1.18        45.96        45.40         4.80        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 TCGA-61-2109 TCGA-61-2110 
       61.64        58.39        65.49        55.50        20.68        44.52 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
      125.72        22.22         6.35        31.07         8.58 

      5Q LOSS CNV 5Q LOSS WILD-TYPE 
             0.79              0.26 
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
           180.16            125.72 
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
            30.28             26.83 
[1] "0.8 - 180.2 (30.3)" "0.3 - 125.7 (26.8)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
      "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
      "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
      "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D50V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  5Q LOSS CNV             1   165                1
  5Q LOSS WILD-TYPE       1   383                1
D50V3, multiclass
                  clus
vv                 5Q LOSS CNV 5Q LOSS WILD-TYPE
  OMENTUM                    1                 1
  OVARY                    165               383
  PERITONEUM OVARY           1                 1
D50V4, continuous
                   vv
clus                I+II III IV
  5Q LOSS CNV          2  45  7
  5Q LOSS WILD-TYPE    2  88 27
D50V5, multiclass
      clus
vv     5Q LOSS CNV 5Q LOSS WILD-TYPE
  I+II           2                 2
  III           45                88
  IV             7                27
D50V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS CNV          1  169
  5Q LOSS WILD-TYPE    2  390
     clus
vv    5Q LOSS CNV 5Q LOSS WILD-TYPE
  NO            1                 2
  YES         169               390
                   vv
clus                R0 R1 R2
  5Q LOSS CNV        1  3  0
  5Q LOSS WILD-TYPE 13 23  2
D50V7, multiclass
    clus
vv   5Q LOSS CNV 5Q LOSS WILD-TYPE
  R0           1                13
  R1           3                23
  R2           0                 2

Clustering(51) Variable = 6p loss
D51V1, survival
                   sevent
clus2                 0   1
  6P LOSS CNV        63  57
  6P LOSS WILD-TYPE 200 227
      6P LOSS CNV 6P LOSS WILD-TYPE 
              120               427 
      6P LOSS CNV 6P LOSS WILD-TYPE 
               57               227 
$`6P LOSS CNV`
TCGA-04-1348 TCGA-04-1367 TCGA-04-1646 TCGA-04-1649 TCGA-04-1651 TCGA-09-0365 
       48.76        71.47        27.88        64.64        36.23         9.47 
TCGA-09-1659 TCGA-09-1670 TCGA-09-1672 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
        9.96        17.98         5.85        97.55         6.15         6.12 
TCGA-09-2053 TCGA-09-2056 TCGA-10-0926 TCGA-13-0720 TCGA-13-0730 TCGA-13-0758 
       39.75        12.46        25.91        44.55        17.79        11.38 
TCGA-13-0766 TCGA-13-0801 TCGA-13-0803 TCGA-13-0883 TCGA-13-0884 TCGA-13-0887 
       21.40         8.28        43.82        68.91       107.18        66.64 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 TCGA-13-0900 TCGA-13-0905 TCGA-13-0910 
       67.99        69.01        57.47        57.07        47.84        37.08 
TCGA-13-0911 TCGA-13-0921 TCGA-13-1405 TCGA-13-1410 TCGA-13-1483 TCGA-13-1491 
       27.68         4.64         7.36         4.70        29.39        52.44 
TCGA-13-1495 TCGA-13-1497 TCGA-13-1501 TCGA-13-1506 TCGA-13-1512 TCGA-13-2059 
       49.22        54.31        32.84         4.41         3.09        12.23 
TCGA-20-1683 TCGA-23-1021 TCGA-23-1030 TCGA-23-1113 TCGA-23-1118 TCGA-23-1123 
       25.38        47.54        29.10        31.20        86.01        33.47 
TCGA-23-2072 TCGA-23-2078 TCGA-24-0966 TCGA-24-0970 TCGA-24-1416 TCGA-24-1426 
       24.95        87.48         7.63        11.64         6.38         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1434 TCGA-24-1435 TCGA-24-1467 TCGA-24-1471 
        4.80        17.36        18.67        43.53       105.99         1.18 
TCGA-24-1546 TCGA-24-1552 TCGA-24-1553 TCGA-24-1560 TCGA-24-1923 TCGA-24-1927 
       64.27        41.39        58.09        44.09        22.65        16.41 
TCGA-24-2019 TCGA-24-2027 TCGA-24-2271 TCGA-24-2280 TCGA-24-2293 TCGA-24-2297 
        4.87       109.68        31.63        70.45        16.64        55.86 
TCGA-24-2298 TCGA-25-1315 TCGA-25-1316 TCGA-25-1320 TCGA-25-1322 TCGA-25-1329 
       53.26        51.06        37.02        36.95         2.99         2.96 
TCGA-25-1635 TCGA-29-1688 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 
       51.22        78.87       101.75        38.53        33.70        31.17 
TCGA-29-1707 TCGA-29-1763 TCGA-29-1775 TCGA-29-1781 TCGA-29-1784 TCGA-29-2428 
       41.95        66.77        12.36         8.35         5.36        45.11 
TCGA-30-1714 TCGA-30-1853 TCGA-30-1859 TCGA-30-1866 TCGA-30-1880 TCGA-31-1951 
       38.07        36.26        48.07        36.62        57.57        22.45 
TCGA-36-2543 TCGA-36-2547 TCGA-36-2548 TCGA-42-2588 TCGA-42-2591 TCGA-59-2350 
        2.24        20.52        14.17         9.44         7.63        22.32 
TCGA-59-2351 TCGA-61-1724 TCGA-61-1727 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 
      116.12        20.94        18.54        31.76        28.47        48.79 
TCGA-61-1740 TCGA-61-1895 TCGA-61-1899 TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 
        2.43         1.41         8.42         9.07        34.13        37.02 
TCGA-61-1913 TCGA-61-1995 TCGA-61-2008 TCGA-61-2096 TCGA-61-2110 TCGA-61-2613 
       48.92         1.97        30.61        58.39        44.52        31.07 

$`6P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1349 TCGA-04-1350 
       18.51        11.87        65.49        63.06        21.57        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       65.46        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       82.36        56.55        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 TCGA-04-1652 
       29.06        84.20        55.40        48.89        28.64        31.86 
TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 
       47.70        45.34        29.16        57.73        17.95        35.54 
TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 
       38.43        89.33        74.89        41.59        57.57        61.87 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1673 TCGA-09-1674 TCGA-09-2045 TCGA-09-2048 
       55.36        30.48         3.02         8.55        35.15         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2054 TCGA-09-2055 TCGA-10-0925 
      112.37        71.11        63.09        20.91        26.93        54.31 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       81.47        18.48        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
       35.41        35.80        15.12        19.86         6.21        24.59 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0751 
       39.58         2.73        12.39        31.07        15.19        55.17 
TCGA-13-0755 TCGA-13-0757 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 
        2.47        11.18        11.54        34.06        32.25        31.04 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 
        8.42        38.93        36.72        28.70        30.35        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0802 TCGA-13-0804 TCGA-13-0805 
        8.71         7.79         8.12         8.19        35.28        35.28 
TCGA-13-0807 TCGA-13-0885 TCGA-13-0886 TCGA-13-0888 TCGA-13-0889 TCGA-13-0893 
       13.61        91.40        74.27        70.39        61.81        43.36 
TCGA-13-0899 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0906 TCGA-13-0908 
       56.15        19.36        47.38        48.33        44.94        44.84 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 
       34.06        29.98        21.14        14.89        13.81         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 
        6.08        10.88         6.61         6.05         5.92         6.84 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1484 
        4.21         5.33        54.61        87.06        61.71        98.04 
TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1492 TCGA-13-1494 
       20.68        22.39        70.82        82.88        73.55        38.17 
TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1504 TCGA-13-1505 
        4.24        37.61        38.37        13.97        16.57         4.21 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2057 TCGA-13-2060 
        4.77         4.14         2.56         3.88        14.24         8.58 
TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
       10.78         8.75         6.28        23.05        25.94        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       72.20        27.48        19.07        16.67         2.93         2.66 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       42.51        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 
        8.81        18.87         2.24        51.35        54.51         3.22 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 
       68.68         4.57        33.30       129.96         4.27         6.38 
TCGA-23-1122 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2079 TCGA-23-2081 
       39.09        58.13         0.53       115.89        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0968 TCGA-24-0975 
       49.84         2.76         4.70         4.50        19.63        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       41.56         7.66        22.32        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 
        6.31         7.82         7.99         7.86         0.76         6.25 
TCGA-24-1424 TCGA-24-1425 TCGA-24-1430 TCGA-24-1431 TCGA-24-1436 TCGA-24-1463 
        6.02         5.95        28.34        19.17         8.55        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 TCGA-24-1544 
       12.46        45.14         9.11         3.42        22.19        26.96 
TCGA-24-1545 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1555 
       57.37        16.21        56.58        41.06        51.91        88.50 
TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 
       70.62        39.88        19.53        45.50        47.70        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 
       10.26        17.23        90.15        88.34        48.33        38.24 
TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 
        8.32         3.48         3.72         3.81         4.37        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1924 TCGA-24-1928 TCGA-24-1930 
        5.75         5.49         9.80        30.21        11.05        81.11 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2029 TCGA-24-2030 
      151.99        44.84        58.16        34.82        14.43        53.95 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 
       18.48        28.18        64.01        44.48        57.07        36.16 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
        0.79         0.36        47.54        44.58         0.82        67.36 
TCGA-24-2290 TCGA-24-2295 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1317 
       36.23        33.11         1.02        26.93        31.99         1.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 TCGA-25-1323 TCGA-25-1623 TCGA-25-1625 
       34.98        65.00        33.96        12.00        18.58        18.02 
TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 
       15.78         0.36        20.58         7.86         0.30        56.94 
TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 
       60.59        35.54        14.93        24.99        18.05        85.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 
       13.02        49.05         1.02        38.04         3.02        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
       45.01        19.99        42.02         2.96        29.00        30.97 
TCGA-25-2409 TCGA-29-1690 TCGA-29-1691 TCGA-29-1695 TCGA-29-1698 TCGA-29-1699 
       26.96        44.71        47.18         0.79        68.28         0.53 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1710 TCGA-29-1711 
       16.90        18.64        59.67        18.25        29.23        34.62 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       17.00        85.68        62.93        39.09        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       24.36        22.52        17.29        11.84        12.30        14.93 
TCGA-29-1783 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2429 
        7.20        34.62        86.17        65.00        62.47         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1718 TCGA-30-1855 
       42.25        11.84        11.47         9.76        51.91         2.47 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1867 
       15.68         0.26        44.91        34.78         6.08         1.18 
TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 
       24.26        30.05        48.79        45.57        30.18        18.77 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 
        6.71        42.51        44.09         2.17        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 
       21.53        22.85        22.55         8.55        30.05        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
       27.85        24.23        24.69        35.05        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2544 
       29.79        25.91        25.08        23.80        21.60        20.98 
TCGA-36-2545 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 
       18.31         6.05        16.14        11.47        14.30         9.07 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 
        7.56         7.46         1.48        24.03        11.38        21.14 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 
        1.74        22.32        28.96        25.05        25.02       180.16 
TCGA-59-2349 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
       80.12         9.40        34.39         2.14         5.39        44.78 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1725 TCGA-61-1728 TCGA-61-1730 TCGA-61-1737 
       11.11         8.05        31.40        27.88         4.34        44.84 
TCGA-61-1738 TCGA-61-1741 TCGA-61-1743 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
       35.80        33.67        43.69         5.79        11.41        13.02 
TCGA-61-1907 TCGA-61-1911 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
       31.30        42.48        56.58        67.73        43.43        15.75 
TCGA-61-1919 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2009 
       38.17         5.52        14.50        17.98         3.98        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       30.64         1.18        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
       51.72        71.74        61.64        60.62        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 
        6.48        76.83        20.68       125.72        22.22         6.35 
TCGA-61-2614 
        8.58 

      6P LOSS CNV 6P LOSS WILD-TYPE 
             1.18              0.26 
      6P LOSS CNV 6P LOSS WILD-TYPE 
           116.12            180.16 
      6P LOSS CNV 6P LOSS WILD-TYPE 
           31.415            26.930 
[1] "1.2 - 116.1 (31.4)" "0.3 - 180.2 (26.9)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
      "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
      "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
      "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
      "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
      "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
      "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D51V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  6P LOSS CNV             1   121                0
  6P LOSS WILD-TYPE       1   427                2
D51V3, multiclass
                  clus
vv                 6P LOSS CNV 6P LOSS WILD-TYPE
  OMENTUM                    1                 1
  OVARY                    121               427
  PERITONEUM OVARY           0                 2
D51V4, continuous
                   vv
clus                I+II III  IV
  6P LOSS CNV          0  30   8
  6P LOSS WILD-TYPE    4 103  26
D51V5, multiclass
      clus
vv     6P LOSS CNV 6P LOSS WILD-TYPE
  I+II           0                 4
  III           30               103
  IV             8                26
D51V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS CNV          1  124
  6P LOSS WILD-TYPE    2  435
     clus
vv    6P LOSS CNV 6P LOSS WILD-TYPE
  NO            1                 2
  YES         124               435
                   vv
clus                R0 R1 R2
  6P LOSS CNV        1  5  1
  6P LOSS WILD-TYPE 13 21  1
D51V7, multiclass
    clus
vv   6P LOSS CNV 6P LOSS WILD-TYPE
  R0           1                13
  R1           5                21
  R2           1                 1

Clustering(52) Variable = 6q loss
D52V1, survival
                   sevent
clus2                 0   1
  6Q LOSS CNV        88 100
  6Q LOSS WILD-TYPE 175 184
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
              188               359 
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
              100               184 
$`6Q LOSS CNV`
TCGA-04-1337 TCGA-04-1348 TCGA-04-1350 TCGA-04-1351 TCGA-04-1367 TCGA-04-1517 
        2.01        48.76        63.98        65.46        71.47        19.99 
TCGA-04-1525 TCGA-04-1646 TCGA-04-1649 TCGA-04-1651 TCGA-09-0365 TCGA-09-0367 
       38.37        27.88        64.64        36.23         9.47        17.95 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1670 TCGA-09-1672 TCGA-09-1675 TCGA-09-2043 
        9.96        38.43        17.98         5.85        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2053 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
        6.12        35.15        39.75        26.93        12.46        54.31 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0935 TCGA-13-0717 TCGA-13-0726 TCGA-13-0751 
       25.91        81.47        35.41        24.59        31.07        55.17 
TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0762 TCGA-13-0766 TCGA-13-0793 
        2.47        11.18        11.38        32.25        21.40        28.70 
TCGA-13-0799 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0883 TCGA-13-0884 
        7.79         8.28         8.19        43.82        68.91       107.18 
TCGA-13-0887 TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       66.64        67.99        69.01        57.47        56.15        57.07 
TCGA-13-0905 TCGA-13-0910 TCGA-13-0911 TCGA-13-0919 TCGA-13-0921 TCGA-13-1404 
       47.84        37.08        27.68        14.89         4.64         6.61 
TCGA-13-1405 TCGA-13-1407 TCGA-13-1410 TCGA-13-1411 TCGA-13-1482 TCGA-13-1483 
        7.36         6.05         4.70         4.21        61.71        29.39 
TCGA-13-1491 TCGA-13-1495 TCGA-13-1497 TCGA-13-1501 TCGA-13-1506 TCGA-13-1512 
       52.44        49.22        54.31        32.84         4.41         3.09 
TCGA-13-2059 TCGA-20-0990 TCGA-20-1683 TCGA-23-1021 TCGA-23-1027 TCGA-23-1030 
       12.23        25.94        25.38        47.54        31.73        29.10 
TCGA-23-1109 TCGA-23-1113 TCGA-23-1118 TCGA-23-1123 TCGA-23-2072 TCGA-23-2078 
       51.35        31.20        86.01        33.47        24.95        87.48 
TCGA-23-2084 TCGA-24-0966 TCGA-24-0970 TCGA-24-0980 TCGA-24-0982 TCGA-24-1105 
       49.84         7.63        11.64         7.66        22.32        47.41 
TCGA-24-1416 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1434 TCGA-24-1435 
        6.38         5.36         4.80        17.36        18.67        43.53 
TCGA-24-1467 TCGA-24-1471 TCGA-24-1546 TCGA-24-1552 TCGA-24-1553 TCGA-24-1560 
      105.99         1.18        64.27        41.39        58.09        44.09 
TCGA-24-1562 TCGA-24-1845 TCGA-24-1923 TCGA-24-1927 TCGA-24-2019 TCGA-24-2261 
       45.50         3.81        22.65        16.41         4.87         0.79 
TCGA-24-2262 TCGA-24-2271 TCGA-24-2280 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 
        0.36        31.63        70.45        36.23        16.64        33.11 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 
       55.86        53.26        51.06        37.02         1.02        34.98 
TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1634 
       36.95        33.96         2.99        12.00         2.96        35.54 
TCGA-25-2042 TCGA-25-2397 TCGA-25-2398 TCGA-25-2409 TCGA-29-1688 TCGA-29-1693 
       13.02        12.00        45.01        26.96        78.87       101.75 
TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1707 TCGA-29-1762 TCGA-29-1763 
       38.53        33.70        31.17        41.95        85.68        66.77 
TCGA-29-1768 TCGA-29-1771 TCGA-29-1775 TCGA-29-1781 TCGA-29-1784 TCGA-29-2428 
       31.23        22.52        12.36         8.35         5.36        45.11 
TCGA-29-2432 TCGA-30-1714 TCGA-30-1853 TCGA-30-1857 TCGA-30-1859 TCGA-30-1866 
       11.84        38.07        36.26         0.26        48.07        36.62 
TCGA-30-1880 TCGA-31-1951 TCGA-31-1953 TCGA-36-1571 TCGA-36-1574 TCGA-36-1580 
       57.57        22.45         6.71        22.85        22.55        24.23 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-42-2588 
       21.60         2.24        18.31        20.52        14.17         9.44 
TCGA-42-2589 TCGA-42-2591 TCGA-57-1583 TCGA-57-1584 TCGA-59-2350 TCGA-59-2351 
        7.56         7.63        11.38        21.14        22.32       116.12 
TCGA-59-2355 TCGA-59-2372 TCGA-61-1724 TCGA-61-1727 TCGA-61-1733 TCGA-61-1734 
        2.14        44.78        20.94        18.54        31.76        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1740 TCGA-61-1895 TCGA-61-1899 TCGA-61-1903 
       48.79        44.84         2.43         1.41         8.42        13.02 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 TCGA-61-1913 TCGA-61-1918 TCGA-61-1995 
        9.07        34.13        37.02        48.92        15.75         1.97 
TCGA-61-1998 TCGA-61-2002 TCGA-61-2008 TCGA-61-2096 TCGA-61-2104 TCGA-61-2110 
        5.52        17.98        30.61        58.39        76.83        44.52 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

$`6Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00         1.81        49.15        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1349 TCGA-04-1356 TCGA-04-1361 
       11.87        65.49        63.06        21.57        49.28        32.52 
TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 
       44.32        33.67        76.54        82.36        56.55        41.59 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 
      119.08        29.06        84.20        55.40        48.89        28.64 
TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0366 TCGA-09-0369 
       31.86        47.70        45.34        29.16        57.73        35.54 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       89.33        74.89        41.59        57.57        61.87        55.36 
TCGA-09-1669 TCGA-09-1673 TCGA-09-1674 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
       30.48         3.02         8.55         4.50       112.37        71.11 
TCGA-09-2051 TCGA-09-2054 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 
       63.09        20.91        18.48        33.24        32.28        11.70 
TCGA-10-0934 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 
        3.88        35.80        15.12        19.86         6.21        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 TCGA-13-0760 
       39.58         2.73        12.39        15.19        17.79        11.54 
TCGA-13-0761 TCGA-13-0764 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0794 
       34.06        31.04         8.42        38.93        36.72        30.35 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0800 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
       19.56         8.71         8.12        35.28        35.28        13.61 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0888 TCGA-13-0889 TCGA-13-0893 TCGA-13-0901 
       91.40        74.27        70.39        61.81        43.36        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0906 TCGA-13-0908 TCGA-13-0912 TCGA-13-0913 
       47.38        48.33        44.94        44.84        34.06        29.98 
TCGA-13-0916 TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1408 
       21.14        13.81         6.41         6.08        10.88         5.92 
TCGA-13-1409 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1484 TCGA-13-1485 
        6.84         5.33        54.61        87.06        98.04        20.68 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1492 TCGA-13-1494 TCGA-13-1496 
       22.39        70.82        82.88        73.55        38.17         4.24 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1504 TCGA-13-1505 TCGA-13-1507 
       37.61        38.37        13.97        16.57         4.21         4.77 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 
        4.14         2.56         3.88        14.24         8.58        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 
        8.75         6.28        23.05        26.20        72.20        27.48 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 
       19.07        16.67         2.93         2.66        42.51        40.54 
TCGA-23-1024 TCGA-23-1026 TCGA-23-1028 TCGA-23-1029 TCGA-23-1031 TCGA-23-1032 
       15.39        26.83        49.41         8.81        18.87         2.24 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1119 
       54.51         3.22        68.68         4.57        33.30       129.96 
TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 
        4.27         6.38        39.09        58.13         0.53       115.89 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0968 
       91.66        77.00         2.76         4.70         4.50        19.63 
TCGA-24-0975 TCGA-24-0979 TCGA-24-1103 TCGA-24-1104 TCGA-24-1413 TCGA-24-1417 
       21.80        41.56        54.08        63.55         6.31         7.82 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 
        7.99         7.86         0.76         6.25         6.02         5.95 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 
       28.34        19.17         8.55        72.92        12.46        45.14 
TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1548 
        9.11         3.42        22.19        26.96        57.37        16.21 
TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       56.58        41.06        51.91        88.50        70.62        39.88 
TCGA-24-1558 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 
       19.53        47.70        25.87        10.26        17.23        90.15 
TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 
       88.34        48.33        38.24         8.32         3.48         3.72 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1924 
        4.37        11.28         5.75         5.49         9.80        30.21 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 
       11.05        81.11       151.99        44.84        58.16        34.82 
TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 
      109.68        14.43        53.95        18.48        28.18        64.01 
TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2267 TCGA-24-2281 TCGA-24-2288 
       44.48        57.07        36.16        47.54        44.58         0.82 
TCGA-24-2289 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1319 TCGA-25-1623 
       67.36         1.02        26.93        31.99        65.00        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 
       18.02        15.78         0.36        20.58         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 
       56.94        60.59        51.22        14.93        24.99        18.05 
TCGA-25-1878 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2399 
       85.05        49.05         1.02        38.04         3.02        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-29-1690 TCGA-29-1691 
       42.02         2.96        29.00        30.97        44.71        47.18 
TCGA-29-1695 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 
        0.79        68.28         0.53        16.90        18.64        59.67 
TCGA-29-1705 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1764 TCGA-29-1766 
       18.25        29.23        34.62        17.00        62.93        39.09 
TCGA-29-1769 TCGA-29-1770 TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       22.98        24.36        17.29        11.84        12.30        14.93 
TCGA-29-1783 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2429 
        7.20        34.62        86.17        65.00        62.47         4.87 
TCGA-29-2431 TCGA-29-2434 TCGA-29-2436 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 
       42.25        11.47         9.76        51.91         2.47        15.68 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1867 TCGA-30-1887 TCGA-30-1891 
       44.91        34.78         6.08         1.18        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1955 TCGA-31-1956 
       48.79        45.57        30.18        18.77        42.51        44.09 
TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1575 TCGA-36-1576 
        2.17        28.73        29.06        21.53         8.55        30.05 
TCGA-36-1577 TCGA-36-1578 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
       25.74        27.85        24.69        35.05        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2544 TCGA-36-2549 
       29.79        25.91        25.08        23.80        20.98         6.05 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2590 TCGA-42-2593 
       16.14        11.47        14.30         9.07         7.46         1.48 
TCGA-57-1582 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 
       24.03         1.74        22.32        28.96        25.05        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2352 TCGA-59-2354 TCGA-59-2363 TCGA-61-1721 
      180.16        80.12         9.40        34.39         5.39        11.11 
TCGA-61-1722 TCGA-61-1725 TCGA-61-1728 TCGA-61-1730 TCGA-61-1738 TCGA-61-1741 
        8.05        31.40        27.88         4.34        35.80        33.67 
TCGA-61-1743 TCGA-61-1900 TCGA-61-1901 TCGA-61-1907 TCGA-61-1911 TCGA-61-1914 
       43.69         5.79        11.41        31.30        42.48        56.58 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1919 TCGA-61-2000 TCGA-61-2003 TCGA-61-2009 
       67.73        43.43        38.17        14.50         3.98        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       30.64         1.18        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
       51.72        71.74        61.64        60.62        65.49        55.50 
TCGA-61-2102 TCGA-61-2109 TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 
        6.48        20.68       125.72        22.22         6.35 

      6Q LOSS CNV 6Q LOSS WILD-TYPE 
             0.26              0.30 
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
           116.12            180.16 
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
           28.175            28.180 
[1] "0.3 - 116.1 (28.2)" "0.3 - 180.2 (28.2)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
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"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
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"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
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"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
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      "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
      "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
[1] "hr=" "1.1"
D52V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  6Q LOSS CNV             2   188                0
  6Q LOSS WILD-TYPE       0   360                2
D52V3, multiclass
                  clus
vv                 6Q LOSS CNV 6Q LOSS WILD-TYPE
  OMENTUM                    2                 0
  OVARY                    188               360
  PERITONEUM OVARY           0                 2
D52V4, continuous
                   vv
clus                I+II III IV
  6Q LOSS CNV          0  43  9
  6Q LOSS WILD-TYPE    4  90 25
D52V5, multiclass
      clus
vv     6Q LOSS CNV 6Q LOSS WILD-TYPE
  I+II           0                 4
  III           43                90
  IV             9                25
D52V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS CNV          1  193
  6Q LOSS WILD-TYPE    2  366
     clus
vv    6Q LOSS CNV 6Q LOSS WILD-TYPE
  NO            1                 2
  YES         193               366
                   vv
clus                R0 R1 R2
  6Q LOSS CNV        4  8  1
  6Q LOSS WILD-TYPE 10 18  1
D52V7, multiclass
    clus
vv   6Q LOSS CNV 6Q LOSS WILD-TYPE
  R0           4                10
  R1           8                18
  R2           1                 1

Clustering(53) Variable = 7p loss
D53V1, survival
                   sevent
clus2                 0   1
  7P LOSS CNV        35  54
  7P LOSS WILD-TYPE 228 230
      7P LOSS CNV 7P LOSS WILD-TYPE 
               89               458 
      7P LOSS CNV 7P LOSS WILD-TYPE 
               54               230 
$`7P LOSS CNV`
TCGA-04-1338 TCGA-04-1347 TCGA-04-1349 TCGA-04-1362 TCGA-04-1638 TCGA-09-0369 
       46.62        63.06        21.57        44.32        55.40        35.54 
TCGA-09-1659 TCGA-09-1666 TCGA-09-1669 TCGA-10-0928 TCGA-10-0931 TCGA-10-0935 
        9.96        57.57        30.48        18.48        32.28        35.41 
TCGA-10-0938 TCGA-13-0751 TCGA-13-0792 TCGA-13-0890 TCGA-13-0897 TCGA-13-1487 
       19.86        55.17        36.72        67.99        57.47        22.39 
TCGA-13-1497 TCGA-13-1505 TCGA-13-2061 TCGA-20-1685 TCGA-23-1029 TCGA-23-1109 
       54.31         4.21        10.78        16.67         8.81        51.35 
TCGA-23-1122 TCGA-23-2078 TCGA-23-2084 TCGA-23-2641 TCGA-24-0982 TCGA-24-1105 
       39.09        87.48        49.84         2.76        22.32        47.41 
TCGA-24-1417 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1434 TCGA-24-1435 
        7.82         5.95         5.36         4.80        18.67        43.53 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1469 TCGA-24-1546 TCGA-24-1548 TCGA-24-1562 
       72.92        12.46         9.11        64.27        16.21        45.50 
TCGA-24-1567 TCGA-24-1843 TCGA-24-1846 TCGA-24-1847 TCGA-24-1930 TCGA-24-2254 
       17.23         3.48         4.37        11.28        81.11        57.07 
TCGA-24-2260 TCGA-24-2262 TCGA-24-2298 TCGA-25-1317 TCGA-25-1321 TCGA-25-1630 
       36.16         0.36        53.26         1.02        33.96         7.86 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1635 TCGA-25-2042 TCGA-25-2391 TCGA-25-2396 
       56.94        60.59        51.22        13.02        49.05         3.02 
TCGA-25-2399 TCGA-29-1691 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1711 
       19.99        47.18        16.90        18.64        59.67        34.62 
TCGA-29-1761 TCGA-29-1766 TCGA-29-1776 TCGA-29-1781 TCGA-29-2414 TCGA-29-2431 
       17.00        39.09        11.84         8.35        86.17        42.25 
TCGA-30-1718 TCGA-30-1855 TCGA-30-1887 TCGA-36-1570 TCGA-36-1574 TCGA-42-2589 
       51.91         2.47        24.26        21.53        22.55         7.56 
TCGA-57-1992 TCGA-59-2352 TCGA-59-2354 TCGA-59-2363 TCGA-61-1724 TCGA-61-1740 
       28.96         9.40        34.39         5.39        20.94         2.43 
TCGA-61-1906 TCGA-61-1913 TCGA-61-2008 TCGA-61-2009 TCGA-61-2096 
       34.13        48.92        30.61        39.85        58.39 

$`7P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 
       40.24        41.00         1.81        49.15         2.01        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1348 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 
       11.87        65.49        48.76        63.98        65.46        49.28 
TCGA-04-1361 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 
       32.52        33.67        76.54        71.47        82.36        56.55 
TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 
       41.59        19.99        38.37       119.08        29.06        84.20 
TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 
       48.89        27.88        28.64        64.64        36.23        31.86 
TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 
       47.70        45.34        29.16         9.47        57.73        17.95 
TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1667 TCGA-09-1668 
       38.43        89.33        74.89        41.59        61.87        55.36 
TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 
       17.98         5.85         3.02         8.55        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
        6.12        35.15         4.50       112.37        71.11        63.09 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       39.75        20.91        26.93        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0930 TCGA-10-0933 TCGA-10-0934 TCGA-10-0936 TCGA-10-0937 
       81.47        33.24        11.70         3.88        35.80        15.12 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
        6.21        24.59        44.55        39.58         2.73        12.39 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       31.07        15.19        17.79         2.47        11.18        11.38 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.54        34.06        32.25        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       38.93        28.70        30.35        19.56         8.71         7.79 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        8.12         8.28         8.19        43.82        35.28        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       13.61        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0891 TCGA-13-0893 TCGA-13-0899 TCGA-13-0900 
       70.39        61.81        69.01        43.36        56.15        57.07 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 
       19.36        47.38        48.33        47.84        44.94        44.84 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 
       37.08        27.68        34.06        29.98        21.14        14.89 
TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 
       13.81         4.64         6.41         6.08        10.88         6.61 
TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 
        7.36         6.05         5.92         6.84         4.70         4.21 
TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 
        5.33        54.61        87.06        61.71        29.39        98.04 
TCGA-13-1485 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 
       20.68        70.82        82.88        52.44        73.55        38.17 
TCGA-13-1495 TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 
       49.22         4.24        37.61        38.37        13.97        32.84 
TCGA-13-1504 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
       16.57         4.41         4.77         4.14         2.56         3.88 
TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2065 TCGA-13-2071 
        3.09        14.24        12.23         8.58         8.75         6.28 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 
       23.05        25.94        26.20        72.20        27.48        25.38 
TCGA-20-1684 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 
       19.07         2.93         2.66        47.54        42.51        40.54 
TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1030 TCGA-23-1031 
       15.39        26.83        31.73        49.41        29.10        18.87 
TCGA-23-1032 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 
        2.24        54.51         3.22        31.20        68.68         4.57 
TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1123 
       33.30        86.01       129.96         4.27         6.38        33.47 
TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2079 TCGA-23-2081 
       58.13         0.53        24.95       115.89        91.66        77.00 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        4.70         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-1103 TCGA-24-1104 TCGA-24-1413 TCGA-24-1416 
       41.56         7.66        54.08        63.55         6.31         6.38 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1428 
        7.99         7.86         0.76         6.25         6.02        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1436 TCGA-24-1466 TCGA-24-1467 TCGA-24-1470 
       28.34        19.17         8.55        45.14       105.99         3.42 
TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1549 TCGA-24-1550 
        1.18        22.19        26.96        57.37        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       51.91        41.39        58.09        88.50        70.62        39.88 
TCGA-24-1558 TCGA-24-1560 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 
       19.53        44.09        47.70        25.87        10.26        90.15 
TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1844 TCGA-24-1845 
       88.34        48.33        38.24         8.32         3.72         3.81 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
        5.75         5.49         9.80        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 
       11.05         4.87       151.99        44.84        58.16        34.82 
TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 
      109.68        14.43        53.95        18.48        28.18        64.01 
TCGA-24-2038 TCGA-24-2261 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
       44.48         0.79        47.54        31.63        70.45        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
        0.82        67.36        36.23        16.64        33.11        55.86 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 
        1.02        26.93        31.99        51.06        37.02        34.98 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 
       65.00        36.95         2.99        12.00         2.96        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1631 TCGA-25-1634 
       18.02        15.78         0.36        20.58         0.30        35.54 
TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2392 TCGA-25-2393 
       14.93        24.99        18.05        85.05         1.02        38.04 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
       12.00        45.01        42.02         2.96        29.00        30.97 
TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       26.96        78.87        44.71       101.75        38.53         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1705 TCGA-29-1707 
       33.70        31.17        68.28         0.53        18.25        41.95 
TCGA-29-1710 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1768 TCGA-29-1769 
       29.23        85.68        66.77        62.93        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1777 TCGA-29-1778 
       24.36        22.52        17.29        12.36        12.30        14.93 
TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 
        7.20         5.36        34.62        65.00        62.47        45.11 
TCGA-29-2429 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1853 
        4.87        11.84        11.47         9.76        38.07        36.26 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 
       15.68         0.26        48.07        44.91        34.78         6.08 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 
       36.62         1.18        57.57        30.05        48.79        45.57 
TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 
       30.18        18.77        22.45         6.71        42.51        44.09 
TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1571 TCGA-36-1575 TCGA-36-1576 
        2.17        28.73        29.06        22.85         8.55        30.05 
TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 
       25.74        27.85        24.23        24.69        35.05        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 
       29.49        29.79        25.91        25.08        23.80        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 
        2.24        20.98        18.31        20.52        14.17         6.05 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2590 
       16.14        11.47        14.30         9.07         9.44         7.46 
TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 
        7.63         1.48        24.03        11.38        21.14         1.74 
TCGA-57-1586 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 
       22.32        25.05        25.02       180.16        80.12        22.32 
TCGA-59-2351 TCGA-59-2355 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1725 
      116.12         2.14        44.78        11.11         8.05        31.40 
TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 
       18.54        27.88         4.34        31.76        28.47        48.79 
TCGA-61-1737 TCGA-61-1738 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 
       44.84        35.80        33.67        43.69         1.41         8.42 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1907 TCGA-61-1910 
        5.79        11.41        13.02         9.07        31.30        37.02 
TCGA-61-1911 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 
       42.48        56.58        67.73        43.43        15.75        38.17 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2012 
        1.97         5.52        14.50        17.98         3.98        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
        1.18        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       71.74        61.64        60.62        65.49        55.50         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 
       76.83        20.68        44.52       125.72        22.22         6.35 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

      7P LOSS CNV 7P LOSS WILD-TYPE 
             0.36              0.26 
      7P LOSS CNV 7P LOSS WILD-TYPE 
            87.48            180.16 
      7P LOSS CNV 7P LOSS WILD-TYPE 
            30.48             27.88 
[1] "0.4 - 87.5 (30.5)"  "0.3 - 180.2 (27.9)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"7P LOSS WILD-TYPE"       "7P LOSS CNV"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "7P LOSS CNV"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV"       "7P LOSS CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
      "7P LOSS CNV"       "7P LOSS CNV" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7P LOSS WILD-TYPE"       "7P LOSS CNV"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV"       "7P LOSS CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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      "7P LOSS CNV"       "7P LOSS CNV" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
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      "7P LOSS CNV" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
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      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV"       "7P LOSS CNV" 
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      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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      "7P LOSS CNV"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
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      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV"       "7P LOSS CNV" 
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"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
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      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"7P LOSS WILD-TYPE"       "7P LOSS CNV"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "7P LOSS CNV"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV"       "7P LOSS CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
      "7P LOSS CNV"       "7P LOSS CNV" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
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      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7P LOSS WILD-TYPE"       "7P LOSS CNV"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV"       "7P LOSS CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
      "7P LOSS CNV"       "7P LOSS CNV" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "7P LOSS CNV" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV"       "7P LOSS CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
      "7P LOSS CNV"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
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      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV"       "7P LOSS CNV" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"7P LOSS WILD-TYPE"       "7P LOSS CNV"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
      "7P LOSS CNV"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV"       "7P LOSS CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
      "7P LOSS CNV"       "7P LOSS CNV" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7P LOSS WILD-TYPE"       "7P LOSS CNV"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV"       "7P LOSS CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
      "7P LOSS CNV"       "7P LOSS CNV" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "7P LOSS CNV" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV"       "7P LOSS CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
      "7P LOSS CNV"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV"       "7P LOSS CNV" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D53V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  7P LOSS CNV             0    88                1
  7P LOSS WILD-TYPE       2   460                1
D53V3, multiclass
                  clus
vv                 7P LOSS CNV 7P LOSS WILD-TYPE
  OMENTUM                    0                 2
  OVARY                     88               460
  PERITONEUM OVARY           1                 1
D53V4, continuous
                   vv
clus                I+II III  IV
  7P LOSS CNV          1  22   3
  7P LOSS WILD-TYPE    3 111  31
D53V5, multiclass
      clus
vv     7P LOSS CNV 7P LOSS WILD-TYPE
  I+II           1                 3
  III           22               111
  IV             3                31
D53V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS CNV          0   90
  7P LOSS WILD-TYPE    3  469
     clus
vv    7P LOSS CNV 7P LOSS WILD-TYPE
  NO            0                 3
  YES          90               469
                   vv
clus                R0 R1 R2
  7P LOSS CNV        3  1  0
  7P LOSS WILD-TYPE 11 25  2
D53V7, multiclass
    clus
vv   7P LOSS CNV 7P LOSS WILD-TYPE
  R0           3                11
  R1           1                25
  R2           0                 2

Clustering(54) Variable = 7q loss
D54V1, survival
                   sevent
clus2                 0   1
  7Q LOSS CNV        18  30
  7Q LOSS WILD-TYPE 245 254
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
               48               499 
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
               30               254 
$`7Q LOSS CNV`
TCGA-04-1349 TCGA-04-1362 TCGA-04-1638 TCGA-09-0369 TCGA-09-1659 TCGA-10-0931 
       21.57        44.32        55.40        35.54         9.96        32.28 
TCGA-13-0751 TCGA-13-0792 TCGA-13-0897 TCGA-13-1487 TCGA-13-2061 TCGA-23-1029 
       55.17        36.72        57.47        22.39        10.78         8.81 
TCGA-24-0982 TCGA-24-1417 TCGA-24-1425 TCGA-24-1426 TCGA-24-1435 TCGA-24-1463 
       22.32         7.82         5.95         5.36        43.53        72.92 
TCGA-24-1469 TCGA-24-1567 TCGA-24-1846 TCGA-24-1847 TCGA-24-2260 TCGA-24-2298 
        9.11        17.23         4.37        11.28        36.16        53.26 
TCGA-25-1317 TCGA-25-1630 TCGA-25-1632 TCGA-25-1633 TCGA-25-2042 TCGA-25-2391 
        1.02         7.86        56.94        60.59        13.02        49.05 
TCGA-25-2396 TCGA-29-1691 TCGA-29-1702 TCGA-29-1703 TCGA-29-1766 TCGA-29-1776 
        3.02        47.18        18.64        59.67        39.09        11.84 
TCGA-29-1781 TCGA-29-2431 TCGA-30-1718 TCGA-30-1855 TCGA-30-1887 TCGA-31-1959 
        8.35        42.25        51.91         2.47        24.26         2.17 
TCGA-36-1577 TCGA-59-2354 TCGA-59-2363 TCGA-61-1724 TCGA-61-2008 TCGA-61-2096 
       25.74        34.39         5.39        20.94        30.61        58.39 

$`7Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1350 
       18.51        11.87        65.49        63.06        48.76        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       65.46        49.28        32.52        33.67        76.54        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       82.36        56.55        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 
       29.06        84.20        48.89        27.88        28.64        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       36.23        31.86        47.70        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 
       57.73        17.95        38.43        89.33        74.89        41.59 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 
       57.57        61.87        55.36        30.48        17.98         5.85 
TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 
        3.02         8.55        97.55         6.15         6.12        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 
        4.50       112.37        71.11        63.09        39.75        20.91 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 
       26.93        12.46        54.31        25.91        81.47        18.48 
TCGA-10-0930 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 
       33.24        11.70         3.88        35.41        35.80        15.12 
TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 
       19.86         6.21        24.59        44.55        39.58         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0755 TCGA-13-0757 
       12.39        31.07        15.19        17.79         2.47        11.18 
TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 
       11.38        11.54        34.06        32.25        31.04        21.40 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 
        8.42        38.93        28.70        30.35        19.56         8.71 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 
        7.79         8.12         8.28         8.19        43.82        35.28 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 
       35.28        13.61        68.91       107.18        91.40        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
       66.64        70.39        61.81        67.99        69.01        43.36 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 
       56.15        57.07        19.36        47.38        48.33        47.84 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 
       44.94        44.84        37.08        27.68        34.06        29.98 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 
       21.14        14.89        13.81         4.64         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 
       10.88         6.61         7.36         6.05         5.92         6.84 
TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
        4.70         4.21         5.33        54.61        87.06        61.71 
TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 
       29.39        98.04        20.68        70.82        82.88        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 
       73.55        38.17        49.22         4.24        54.31        37.61 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       38.37        13.97        32.84        16.57         4.21         4.41 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 
        4.77         4.14         2.56         3.88         3.09        14.24 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 
       12.23         8.58         8.75         6.28        23.05        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 
       26.20        72.20        27.48        25.38        19.07        16.67 
TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 
        2.93         2.66        47.54        42.51        40.54        15.39 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       26.83        31.73        49.41        29.10        18.87         2.24 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 
       51.35        54.51         3.22        31.20        68.68         4.57 
TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 
       33.30        86.01       129.96         4.27         6.38        39.09 
TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 
       33.47        58.13         0.53        24.95       115.89        87.48 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
       91.66        77.00        49.84         2.76         4.70         4.50 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1418 
       54.08        63.55        47.41         6.31         6.38         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1427 TCGA-24-1428 
        7.86         0.76         6.25         6.02         4.80        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1436 TCGA-24-1464 TCGA-24-1466 
       28.34        19.17        18.67         8.55        12.46        45.14 
TCGA-24-1467 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 
      105.99         3.42         1.18        22.19        26.96        57.37 
TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
       64.27        16.21        56.58        41.06        51.91        41.39 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 
       58.09        88.50        70.62        39.88        19.53        44.09 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 TCGA-24-1604 
       45.50        47.70        25.87        10.26        90.15        88.34 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 
       48.33        38.24         8.32         3.48         3.72         3.81 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
        5.75         5.49         9.80        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       11.05        81.11         4.87       151.99        44.84        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 
       34.82       109.68        14.43        53.95        18.48        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 
       64.01        44.48        57.07         0.79         0.36        47.54 
TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 
       31.63        70.45        44.58         0.82        67.36        36.23 
TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 
       16.64        33.11        55.86         1.02        26.93        31.99 
TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       51.06        37.02        34.98        65.00        36.95        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
        2.99        12.00         2.96        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1631 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 
        0.36        20.58         0.30        35.54        51.22        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2392 TCGA-25-2393 TCGA-25-2397 
       24.99        18.05        85.05         1.02        38.04        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
       45.01        19.99        42.02         2.96        29.00        30.97 
TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       26.96        78.87        44.71       101.75        38.53         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1705 
       33.70        31.17        68.28         0.53        16.90        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 
       41.95        29.23        34.62        17.00        85.68        66.77 
TCGA-29-1764 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 
       62.93        31.23        22.98        24.36        22.52        17.29 
TCGA-29-1775 TCGA-29-1777 TCGA-29-1778 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 
       12.36        12.30        14.93         7.20         5.36        34.62 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2432 
       86.17        65.00        62.47        45.11         4.87        11.84 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1853 TCGA-30-1856 TCGA-30-1857 
       11.47         9.76        38.07        36.26        15.68         0.26 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 
       48.07        44.91        34.78         6.08        36.62         1.18 
TCGA-30-1880 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 
       57.57        30.05        48.79        45.57        30.18        18.77 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 
       22.45         6.71        42.51        44.09        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1578 
       21.53        22.85        22.55         8.55        30.05        27.85 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       24.23        24.69        35.05        33.01        29.49        29.79 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       25.91        25.08        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 
       18.31        20.52        14.17         6.05        16.14        11.47 
TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
       14.30         9.07         9.44         7.56         7.46         7.63 
TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 
        1.48        24.03        11.38        21.14         1.74        22.32 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 
       28.96        25.05        25.02       180.16        80.12        22.32 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2355 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 
      116.12         9.40         2.14        44.78        11.11         8.05 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 
       31.40        18.54        27.88         4.34        31.76        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 
       48.79        44.84        35.80         2.43        33.67        43.69 
TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
        1.41         8.42         5.79        11.41        13.02         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
       34.13        31.30        37.02        42.48        48.92        56.58 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       67.73        43.43        15.75        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 
       14.50        17.98         3.98        39.85        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
       45.96        45.40         4.80         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 
       61.64        60.62        65.49        55.50         6.48        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 
       20.68        44.52       125.72        22.22         6.35        31.07 
TCGA-61-2614 
        8.58 

      7Q LOSS CNV 7Q LOSS WILD-TYPE 
             1.02              0.26 
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
            72.92            180.16 
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
           23.325            28.470 
[1] "1.0 - 72.9 (23.3)"  "0.3 - 180.2 (28.5)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV"       "7Q LOSS CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV"       "7Q LOSS CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
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      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV"       "7Q LOSS CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV"       "7Q LOSS CNV" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D54V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  7Q LOSS CNV             0    47                1
  7Q LOSS WILD-TYPE       2   501                1
D54V3, multiclass
                  clus
vv                 7Q LOSS CNV 7Q LOSS WILD-TYPE
  OMENTUM                    0                 2
  OVARY                     47               501
  PERITONEUM OVARY           1                 1
D54V4, continuous
                   vv
clus                I+II III  IV
  7Q LOSS CNV          0   8   3
  7Q LOSS WILD-TYPE    4 125  31
D54V5, multiclass
      clus
vv     7Q LOSS CNV 7Q LOSS WILD-TYPE
  I+II           0                 4
  III            8               125
  IV             3                31
D54V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS CNV          1   47
  7Q LOSS WILD-TYPE    2  512
     clus
vv    7Q LOSS CNV 7Q LOSS WILD-TYPE
  NO            1                 2
  YES          47               512
                   vv
clus                R0 R1 R2
  7Q LOSS CNV        2  0  0
  7Q LOSS WILD-TYPE 12 26  2
D54V7, multiclass
[1] "Remove cluster labels:" "7Q LOSS CNV"           
clus
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
                2                40 
       TCGA-04-1516        TCGA-04-1644        TCGA-13-0807        TCGA-13-0911 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-29-2414        TCGA-29-2425        TCGA-29-2427 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-2428        TCGA-29-2429        TCGA-29-2432        TCGA-29-2434 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-2436        TCGA-36-2529        TCGA-36-2530        TCGA-36-2532 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2534        TCGA-36-2537        TCGA-36-2538        TCGA-36-2540 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2542        TCGA-36-2543        TCGA-36-2544        TCGA-36-2545 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2547        TCGA-36-2548        TCGA-36-2549        TCGA-36-2551 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2552        TCGA-42-2582        TCGA-42-2587        TCGA-42-2588 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2593        TCGA-57-1993 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-59-2372        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 

Clustering(55) Variable = 8p loss
D55V1, survival
                   sevent
clus2                 0   1
  8P LOSS CNV       103 123
  8P LOSS WILD-TYPE 160 161
      8P LOSS CNV 8P LOSS WILD-TYPE 
              226               321 
      8P LOSS CNV 8P LOSS WILD-TYPE 
              123               161 
$`8P LOSS CNV`
TCGA-04-1332 TCGA-04-1338 TCGA-04-1346 TCGA-04-1348 TCGA-04-1349 TCGA-04-1361 
       41.00        46.62        65.49        48.76        21.57        32.52 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 TCGA-04-1530 
       76.54        71.47        82.36        56.55        19.99       119.08 
TCGA-04-1536 TCGA-04-1638 TCGA-04-1646 TCGA-04-1652 TCGA-09-0366 TCGA-09-0367 
       29.06        55.40        27.88        31.86        57.73        17.95 
TCGA-09-1661 TCGA-09-1664 TCGA-09-1668 TCGA-09-1670 TCGA-09-1674 TCGA-09-2050 
       38.43        74.89        55.36        17.98         8.55        71.11 
TCGA-09-2051 TCGA-09-2054 TCGA-09-2056 TCGA-10-0925 TCGA-10-0927 TCGA-10-0928 
       63.09        20.91        12.46        54.31        81.47        18.48 
TCGA-10-0930 TCGA-10-0931 TCGA-10-0936 TCGA-13-0723 TCGA-13-0725 TCGA-13-0730 
       33.24        32.28        35.80        39.58        12.39        17.79 
TCGA-13-0757 TCGA-13-0761 TCGA-13-0762 TCGA-13-0792 TCGA-13-0793 TCGA-13-0795 
       11.18        34.06        32.25        36.72        28.70        19.56 
TCGA-13-0802 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0885 TCGA-13-0888 
        8.19        35.28        13.61        68.91        91.40        70.39 
TCGA-13-0890 TCGA-13-0899 TCGA-13-0901 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       67.99        56.15        19.36        34.06        29.98        21.14 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1407 TCGA-13-1411 TCGA-13-1481 TCGA-13-1482 
        6.08        10.88         6.05         4.21        87.06        61.71 
TCGA-13-1483 TCGA-13-1487 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1499 
       29.39        22.39        38.17        49.22         4.24        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1505 TCGA-13-1509 TCGA-13-1510 TCGA-13-2059 
       13.97        32.84         4.21         4.14         2.56        12.23 
TCGA-13-2061 TCGA-13-2065 TCGA-20-0990 TCGA-20-0991 TCGA-20-1684 TCGA-20-1686 
       10.78         8.75        25.94        26.20        19.07         2.93 
TCGA-23-1021 TCGA-23-1024 TCGA-23-1027 TCGA-23-1114 TCGA-23-1116 TCGA-23-1120 
       47.54        15.39        31.73        68.68         4.57         4.27 
TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2643 TCGA-23-2645 
       33.47        58.13         0.53       115.89         4.70         4.50 
TCGA-24-0975 TCGA-24-0980 TCGA-24-0982 TCGA-24-1104 TCGA-24-1413 TCGA-24-1416 
       21.80         7.66        22.32        63.55         6.31         6.38 
TCGA-24-1417 TCGA-24-1423 TCGA-24-1424 TCGA-24-1427 TCGA-24-1428 TCGA-24-1431 
        7.82         6.25         6.02         4.80        17.36        19.17 
TCGA-24-1434 TCGA-24-1436 TCGA-24-1464 TCGA-24-1467 TCGA-24-1470 TCGA-24-1544 
       18.67         8.55        12.46       105.99         3.42        26.96 
TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1552 TCGA-24-1558 
       64.27        16.21        56.58        41.06        41.39        19.53 
TCGA-24-1604 TCGA-24-1614 TCGA-24-1842 TCGA-24-1846 TCGA-24-1924 TCGA-24-1928 
       88.34        48.33         8.32         4.37        30.21        11.05 
TCGA-24-1930 TCGA-24-2024 TCGA-24-2030 TCGA-24-2035 TCGA-24-2254 TCGA-24-2261 
       81.11        58.16        53.95        28.18        57.07         0.79 
TCGA-24-2267 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2290 TCGA-24-2293 
       47.54        70.45        44.58         0.82        36.23        16.64 
TCGA-24-2295 TCGA-25-1313 TCGA-25-1314 TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 
       33.11        26.93        31.99        34.98        65.00        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1626 TCGA-25-1627 TCGA-25-1630 TCGA-25-1631 
        2.99        12.00        15.78         0.36         7.86         0.30 
TCGA-25-1633 TCGA-25-1635 TCGA-25-1871 TCGA-25-1878 TCGA-25-2393 TCGA-25-2396 
       60.59        51.22        24.99        85.05        38.04         3.02 
TCGA-25-2399 TCGA-25-2404 TCGA-25-2409 TCGA-29-1694 TCGA-29-1695 TCGA-29-1697 
       19.99        29.00        26.96        38.53         0.79        31.17 
TCGA-29-1698 TCGA-29-1701 TCGA-29-1703 TCGA-29-1705 TCGA-29-1710 TCGA-29-1761 
       68.28        16.90        59.67        18.25        29.23        17.00 
TCGA-29-1762 TCGA-29-1768 TCGA-29-1770 TCGA-29-1775 TCGA-29-1783 TCGA-29-1784 
       85.68        31.23        24.36        12.36         7.20         5.36 
TCGA-29-2428 TCGA-29-2429 TCGA-29-2434 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 
       45.11         4.87        11.47         2.47        15.68         0.26 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1887 TCGA-31-1950 TCGA-31-1955 TCGA-36-1571 
        6.08        36.62        24.26        18.77        42.51        22.85 
TCGA-36-1575 TCGA-36-1577 TCGA-36-1580 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
        8.55        25.74        24.23        29.79        25.91        25.08 
TCGA-36-2542 TCGA-36-2547 TCGA-36-2552 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 
       21.60        20.52        11.47         9.07         9.44         7.56 
TCGA-42-2590 TCGA-42-2593 TCGA-57-1583 TCGA-57-1585 TCGA-57-1992 TCGA-57-1993 
        7.46         1.48        11.38         1.74        28.96        25.05 
TCGA-57-1994 TCGA-59-2348 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-61-1727 
       25.02       180.16        22.32       116.12         9.40        18.54 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1737 TCGA-61-1740 TCGA-61-1741 
       27.88         4.34        31.76        44.84         2.43        33.67 
TCGA-61-1895 TCGA-61-1904 TCGA-61-1914 TCGA-61-1915 TCGA-61-1919 TCGA-61-2000 
        1.41         9.07        56.58        67.73        38.17        14.50 
TCGA-61-2008 TCGA-61-2018 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       30.61        45.40        60.62        65.49        55.50         6.48 
TCGA-61-2104 TCGA-61-2110 TCGA-61-2113 TCGA-61-2613 
       76.83        44.52        22.22        31.07 

$`8P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 TCGA-04-1343 
       40.24         1.81        49.15         2.01        18.51        11.87 
TCGA-04-1347 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1362 TCGA-04-1364 
       63.06        63.98        65.46        49.28        44.32        33.67 
TCGA-04-1516 TCGA-04-1525 TCGA-04-1542 TCGA-04-1644 TCGA-04-1648 TCGA-04-1649 
       41.59        38.37        84.20        48.89        28.64        64.64 
TCGA-04-1651 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0369 
       36.23        47.70        45.34        29.16         9.47        35.54 
TCGA-09-1659 TCGA-09-1662 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1669 
        9.96        89.33        41.59        57.57        61.87        30.48 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 
        5.85         3.02        97.55         6.15         6.12        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2053 TCGA-09-2055 TCGA-10-0926 TCGA-10-0933 
        4.50       112.37        39.75        26.93        25.91        11.70 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
        3.88        35.41        15.12        19.86         6.21        24.59 
TCGA-13-0720 TCGA-13-0724 TCGA-13-0726 TCGA-13-0727 TCGA-13-0751 TCGA-13-0755 
       44.55         2.73        31.07        15.19        55.17         2.47 
TCGA-13-0758 TCGA-13-0760 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       11.38        11.54        31.04        21.40         8.42        38.93 
TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0803 
       30.35         8.71         7.79         8.12         8.28        43.82 
TCGA-13-0804 TCGA-13-0884 TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 TCGA-13-0891 
       35.28       107.18        74.27        66.64        61.81        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 
       43.36        57.47        57.07        47.38        48.33        47.84 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0919 TCGA-13-0920 
       44.94        44.84        37.08        27.68        14.89        13.81 
TCGA-13-0921 TCGA-13-0923 TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 TCGA-13-1409 
        4.64         6.41         6.61         7.36         5.92         6.84 
TCGA-13-1410 TCGA-13-1412 TCGA-13-1477 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 
        4.70         5.33        54.61        98.04        20.68        70.82 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1497 TCGA-13-1498 TCGA-13-1504 
       82.88        52.44        73.55        54.31        37.61        16.57 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2060 
        4.41         4.77         3.88         3.09        14.24         8.58 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1685 
        6.28        23.05        72.20        27.48        25.38        16.67 
TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 TCGA-23-1028 TCGA-23-1029 
        2.66        42.51        40.54        26.83        49.41         8.81 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 
       29.10        18.87         2.24        51.35        54.51         3.22 
TCGA-23-1113 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1121 TCGA-23-1122 
       31.20        33.30        86.01       129.96         6.38        39.09 
TCGA-23-2072 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
       24.95        87.48        91.66        77.00        49.84         2.76 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0979 TCGA-24-1103 TCGA-24-1105 
        7.63        19.63        11.64        41.56        54.08        47.41 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1425 TCGA-24-1426 TCGA-24-1430 
        7.99         7.86         0.76         5.95         5.36        28.34 
TCGA-24-1435 TCGA-24-1463 TCGA-24-1466 TCGA-24-1469 TCGA-24-1471 TCGA-24-1474 
       43.53        72.92        45.14         9.11         1.18        22.19 
TCGA-24-1545 TCGA-24-1551 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       57.37        51.91        58.09        88.50        70.62        39.88 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1847 
       90.15        38.24         3.48         3.72         3.81        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 TCGA-24-2019 
        5.75         5.49         9.80        22.65        16.41         4.87 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2033 
      151.99        44.84        34.82       109.68        14.43        18.48 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2260 TCGA-24-2262 TCGA-24-2271 TCGA-24-2289 
       64.01        44.48        36.16         0.36        31.63        67.36 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 
       55.86        53.26         1.02        51.06        37.02         1.02 
TCGA-25-1320 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1628 TCGA-25-1632 
       36.95         2.96        18.58        18.02        20.58        56.94 
TCGA-25-1634 TCGA-25-1870 TCGA-25-1877 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       35.54        14.93        18.05        13.02        49.05         1.02 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2400 TCGA-25-2401 TCGA-25-2408 TCGA-29-1688 
       12.00        45.01        42.02         2.96        30.97        78.87 
TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1696 TCGA-29-1699 TCGA-29-1702 
       44.71        47.18       101.75        33.70         0.53        18.64 
TCGA-29-1707 TCGA-29-1711 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1769 
       41.95        34.62        66.77        62.93        39.09        22.98 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 
       22.52        17.29        11.84        12.30        14.93         8.35 
TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2431 TCGA-29-2432 
       34.62        86.17        65.00        62.47        42.25        11.84 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1859 TCGA-30-1860 
        9.76        38.07        51.91        36.26        48.07        44.91 
TCGA-30-1861 TCGA-30-1867 TCGA-30-1880 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 
       34.78         1.18        57.57        30.05        48.79        45.57 
TCGA-31-1946 TCGA-31-1951 TCGA-31-1953 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 
       30.18        22.45         6.71        44.09         2.17        28.73 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1574 TCGA-36-1576 TCGA-36-1578 TCGA-36-1581 
       29.06        21.53        22.55        30.05        27.85        24.69 
TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2540 TCGA-36-2543 TCGA-36-2544 
       35.05        33.01        29.49        23.80         2.24        20.98 
TCGA-36-2545 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-42-2582 TCGA-42-2591 
       18.31        14.17         6.05        16.14        14.30         7.63 
TCGA-57-1582 TCGA-57-1584 TCGA-57-1586 TCGA-59-2349 TCGA-59-2354 TCGA-59-2355 
       24.03        21.14        22.32        80.12        34.39         2.14 
TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 
        5.39        44.78        11.11         8.05        20.94        31.40 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1738 TCGA-61-1743 TCGA-61-1899 TCGA-61-1900 
       28.47        48.79        35.80        43.69         8.42         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 
       11.41        13.02        34.13        31.30        37.02        42.48 
TCGA-61-1913 TCGA-61-1917 TCGA-61-1918 TCGA-61-1995 TCGA-61-1998 TCGA-61-2002 
       48.92        43.43        15.75         1.97         5.52        17.98 
TCGA-61-2003 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2087 
        3.98        39.85        30.64         1.18        45.96         4.80 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2109 
        4.77        51.72        71.74        61.64        58.39        20.68 
TCGA-61-2111 TCGA-61-2612 TCGA-61-2614 
      125.72         6.35         8.58 

      8P LOSS CNV 8P LOSS WILD-TYPE 
             0.26              0.36 
      8P LOSS CNV 8P LOSS WILD-TYPE 
           180.16            151.99 
      8P LOSS CNV 8P LOSS WILD-TYPE 
           25.925            29.490 
[1] "0.3 - 180.2 (25.9)" "0.4 - 152.0 (29.5)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D55V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  8P LOSS CNV             2   225                0
  8P LOSS WILD-TYPE       0   323                2
D55V3, multiclass
                  clus
vv                 8P LOSS CNV 8P LOSS WILD-TYPE
  OMENTUM                    2                 0
  OVARY                    225               323
  PERITONEUM OVARY           0                 2
D55V4, continuous
                   vv
clus                I+II III IV
  8P LOSS CNV          2  54 14
  8P LOSS WILD-TYPE    2  79 20
D55V5, multiclass
      clus
vv     8P LOSS CNV 8P LOSS WILD-TYPE
  I+II           2                 2
  III           54                79
  IV            14                20
D55V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS CNV          1  231
  8P LOSS WILD-TYPE    2  328
     clus
vv    8P LOSS CNV 8P LOSS WILD-TYPE
  NO            1                 2
  YES         231               328
                   vv
clus                R0 R1 R2
  8P LOSS CNV        5 10  2
  8P LOSS WILD-TYPE  9 16  0
D55V7, multiclass
    clus
vv   8P LOSS CNV 8P LOSS WILD-TYPE
  R0           5                 9
  R1          10                16
  R2           2                 0

Clustering(56) Variable = 8q loss
D56V1, survival
                   sevent
clus2                 0   1
  8Q LOSS CNV        29  31
  8Q LOSS WILD-TYPE 234 253
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
               60               487 
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
               31               253 
$`8Q LOSS CNV`
TCGA-04-1346 TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 TCGA-09-0366 TCGA-09-2051 
       65.49        82.36        56.55        19.99        57.73        63.09 
TCGA-09-2054 TCGA-13-0730 TCGA-13-0757 TCGA-13-0762 TCGA-13-0885 TCGA-13-0901 
       20.91        17.79        11.18        32.25        91.40        19.36 
TCGA-13-0913 TCGA-13-1407 TCGA-13-1483 TCGA-13-1510 TCGA-13-2061 TCGA-13-2065 
       29.98         6.05        29.39         2.56        10.78         8.75 
TCGA-20-1684 TCGA-23-1021 TCGA-23-1027 TCGA-23-1032 TCGA-23-1809 TCGA-24-0980 
       19.07        47.54        31.73         2.24         0.53         7.66 
TCGA-24-0982 TCGA-24-1413 TCGA-24-1427 TCGA-24-1431 TCGA-24-1544 TCGA-24-1548 
       22.32         6.31         4.80        19.17        26.96        16.21 
TCGA-24-1842 TCGA-24-1928 TCGA-24-2030 TCGA-24-2254 TCGA-24-2261 TCGA-24-2267 
        8.32        11.05        53.95        57.07         0.79        47.54 
TCGA-24-2280 TCGA-25-1318 TCGA-25-1319 TCGA-25-1630 TCGA-25-1634 TCGA-25-1635 
       70.45        34.98        65.00         7.86        35.54        51.22 
TCGA-25-1871 TCGA-25-2393 TCGA-29-1770 TCGA-29-1775 TCGA-36-1571 TCGA-36-1575 
       24.99        38.04        24.36        12.36        22.85         8.55 
TCGA-36-2537 TCGA-36-2547 TCGA-42-2587 TCGA-42-2589 TCGA-57-1994 TCGA-61-1727 
       25.91        20.52         9.07         7.56        25.02        18.54 
TCGA-61-1733 TCGA-61-1904 TCGA-61-2097 TCGA-61-2101 TCGA-61-2102 TCGA-61-2110 
       31.76         9.07        60.62        55.50         6.48        44.52 

$`8Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       18.51        11.87        63.06        48.76        21.57        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       65.46        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1516 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 
       71.47        41.59        38.37       119.08        29.06        84.20 
TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 
       55.40        48.89        27.88        28.64        64.64        36.23 
TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0367 
       31.86        47.70        45.34        29.16         9.47        17.95 
TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 
       35.54         9.96        38.43        89.33        74.89        41.59 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 
       57.57        61.87        55.36        30.48        17.98         5.85 
TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 
        3.02         8.55        97.55         6.15         6.12        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2053 TCGA-09-2055 TCGA-09-2056 
        4.50       112.37        71.11        39.75        26.93        12.46 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 
       54.31        25.91        81.47        18.48        33.24        32.28 
TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 
       11.70         3.88        35.41        35.80        15.12        19.86 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
        6.21        24.59        44.55        39.58         2.73        12.39 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0751 TCGA-13-0755 TCGA-13-0758 TCGA-13-0760 
       31.07        15.19        55.17         2.47        11.38        11.54 
TCGA-13-0761 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       34.06        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       28.70        30.35        19.56         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.28         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 
       68.91       107.18        74.27        66.64        70.39        61.81 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       67.99        69.01        43.36        57.47        56.15        57.07 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       47.38        48.33        47.84        44.94        44.84        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       27.68        34.06        21.14        14.89        13.81         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 
        6.41         6.08        10.88         6.61         7.36         5.92 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        6.84         4.70         4.21         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 
       61.71        98.04        20.68        22.39        70.82        82.88 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 
       52.44        73.55        38.17        49.22         4.24        54.31 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       37.61        38.37        13.97        32.84        16.57         4.21 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 
        4.41         4.77         4.14         3.88         3.09        14.24 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
       12.23         8.58         6.28        23.05        25.94        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       72.20        27.48        25.38        16.67         2.93         2.66 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1028 TCGA-23-1029 
       42.51        40.54        15.39        26.83        49.41         8.81 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 
       29.10        18.87        51.35        54.51         3.22        31.20 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       68.68         4.57        33.30        86.01       129.96         4.27 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 
        6.38        39.09        33.47        58.13        24.95       115.89 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 
       87.48        91.66        77.00        49.84         2.76         4.70 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 
        4.50         7.63        19.63        11.64        21.80        41.56 
TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       54.08        63.55        47.41         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 
        7.86         0.76         6.25         6.02         5.95         5.36 
TCGA-24-1428 TCGA-24-1430 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 
       17.36        28.34        18.67        43.53         8.55        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 
       12.46        45.14       105.99         9.11         3.42         1.18 
TCGA-24-1474 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       22.19        57.37        64.27        56.58        41.06        51.91 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 
       41.39        58.09        88.50        70.62        39.88        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 
       90.15        88.34        48.33        38.24         3.48         3.72 
TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.81         4.37        11.28         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 
       22.65        30.21        16.41        81.11         4.87       151.99 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2033 
       44.84        58.16        34.82       109.68        14.43        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2260 TCGA-24-2262 TCGA-24-2271 
       28.18        64.01        44.48        36.16         0.36        31.63 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 
       44.58         0.82        67.36        36.23        16.64        33.11 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       55.86        53.26         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
       37.02         1.02        36.95        33.96         2.99        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
        2.96        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1870 TCGA-25-1877 TCGA-25-1878 
        0.30        56.94        60.59        14.93        18.05        85.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
       13.02        49.05         1.02         3.02        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       19.99        42.02         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       78.87        44.71        47.18       101.75        38.53         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
       33.70        31.17        68.28         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       59.67        18.25        41.95        29.23        34.62        17.00 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       85.68        66.77        62.93        39.09        31.23        22.98 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 
       22.52        17.29        11.84        12.30        14.93         8.35 
TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 
        7.20         5.36        34.62        86.17        65.00        62.47 
TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 
       45.11         4.87        42.25        11.84        11.47         9.76 
TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 
       38.07        51.91        36.26         2.47        15.68         0.26 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 
       48.07        44.91        34.78         6.08        36.62         1.18 
TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
       57.57        24.26        30.05        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 
       18.77        22.45         6.71        42.51        44.09         2.17 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1574 TCGA-36-1576 TCGA-36-1577 
       28.73        29.06        21.53        22.55        30.05        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
       27.85        24.23        24.69        35.05        33.01        29.49 
TCGA-36-2534 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       29.79        25.08        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 
       18.31        14.17         6.05        16.14        11.47        14.30 
TCGA-42-2588 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 
        9.44         7.46         7.63         1.48        24.03        11.38 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-59-2348 
       21.14         1.74        22.32        28.96        25.05       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 
       80.12        22.32       116.12         9.40        34.39         2.14 
TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 
        5.39        44.78        11.11         8.05        20.94        31.40 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
       27.88         4.34        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 
        2.43        33.67        43.69         1.41         8.42         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 
       11.41        13.02        34.13        31.30        37.02        42.48 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 
       48.92        56.58        67.73        43.43        15.75        38.17 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 
        1.97         5.52        14.50        17.98         3.98        30.61 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
       39.85        30.64         1.18        45.96        45.40         4.80 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 
        4.77        51.72        71.74        61.64        58.39        65.49 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 
       76.83        20.68       125.72        22.22         6.35        31.07 
TCGA-61-2614 
        8.58 

      8Q LOSS CNV 8Q LOSS WILD-TYPE 
             0.53              0.26 
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
            91.40            180.16 
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
           22.585            28.960 
[1] "0.5 - 91.4 (22.6)"  "0.3 - 180.2 (29.0)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "8Q LOSS CNV"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "8Q LOSS CNV"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "8Q LOSS CNV"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "8Q LOSS CNV"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "8Q LOSS CNV"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "8Q LOSS CNV"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D56V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  8Q LOSS CNV             0    60                0
  8Q LOSS WILD-TYPE       2   488                2
D56V3, multiclass
                  clus
vv                 8Q LOSS CNV 8Q LOSS WILD-TYPE
  OMENTUM                    0                 2
  OVARY                     60               488
  PERITONEUM OVARY           0                 2
D56V4, continuous
                   vv
clus                I+II III  IV
  8Q LOSS CNV          0  12   2
  8Q LOSS WILD-TYPE    4 121  32
D56V5, multiclass
      clus
vv     8Q LOSS CNV 8Q LOSS WILD-TYPE
  I+II           0                 4
  III           12               121
  IV             2                32
D56V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS CNV          0   62
  8Q LOSS WILD-TYPE    3  497
     clus
vv    8Q LOSS CNV 8Q LOSS WILD-TYPE
  NO            0                 3
  YES          62               497
                   vv
clus                R0 R1 R2
  8Q LOSS CNV        2  2  0
  8Q LOSS WILD-TYPE 12 24  2
D56V7, multiclass
    clus
vv   8Q LOSS CNV 8Q LOSS WILD-TYPE
  R0           2                12
  R1           2                24
  R2           0                 2

Clustering(57) Variable = 9p loss
D57V1, survival
                   sevent
clus2                 0   1
  9P LOSS CNV        91 114
  9P LOSS WILD-TYPE 172 170
      9P LOSS CNV 9P LOSS WILD-TYPE 
              205               342 
      9P LOSS CNV 9P LOSS WILD-TYPE 
              114               170 
$`9P LOSS CNV`
TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 
       49.15         2.01        46.62        11.87        65.49        63.06 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 
       21.57        63.98        65.46        49.28        32.52        44.32 
TCGA-04-1364 TCGA-04-1371 TCGA-04-1517 TCGA-04-1525 TCGA-04-1536 TCGA-04-1542 
       33.67        82.36        19.99        38.37        29.06        84.20 
TCGA-04-1638 TCGA-04-1646 TCGA-04-1652 TCGA-09-0364 TCGA-09-0365 TCGA-09-0367 
       55.40        27.88        31.86        29.16         9.47        17.95 
TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1665 TCGA-09-1670 
       35.54         9.96        38.43        89.33        41.59        17.98 
TCGA-09-1675 TCGA-09-2044 TCGA-09-2049 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 
       97.55         6.12       112.37        39.75        20.91        26.93 
TCGA-09-2056 TCGA-10-0927 TCGA-10-0931 TCGA-10-0938 TCGA-13-0717 TCGA-13-0762 
       12.46        81.47        32.28        19.86        24.59        32.25 
TCGA-13-0795 TCGA-13-0804 TCGA-13-0805 TCGA-13-0883 TCGA-13-0886 TCGA-13-0888 
       19.56        35.28        35.28        68.91        74.27        70.39 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0904 TCGA-13-0908 TCGA-13-0921 TCGA-13-0924 
       61.81        67.99        48.33        44.84         4.64         6.08 
TCGA-13-1403 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 
       10.88         5.92         6.84         4.70         4.21         5.33 
TCGA-13-1483 TCGA-13-1485 TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 
       29.39        20.68        22.39        82.88        52.44        38.17 
TCGA-13-1495 TCGA-13-1509 TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 
       49.22         4.14        14.24         8.58        10.78         8.75 
TCGA-20-1684 TCGA-20-1685 TCGA-23-1022 TCGA-23-1027 TCGA-23-1028 TCGA-23-1030 
       19.07        16.67        42.51        31.73        49.41        29.10 
TCGA-23-1031 TCGA-23-1114 TCGA-23-1119 TCGA-23-2081 TCGA-23-2643 TCGA-23-2645 
       18.87        68.68       129.96        77.00         4.70         4.50 
TCGA-24-0982 TCGA-24-1105 TCGA-24-1419 TCGA-24-1422 TCGA-24-1426 TCGA-24-1427 
       22.32        47.41         7.86         0.76         5.36         4.80 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1463 TCGA-24-1464 TCGA-24-1545 TCGA-24-1546 
       28.34        19.17        72.92        12.46        57.37        64.27 
TCGA-24-1549 TCGA-24-1550 TCGA-24-1560 TCGA-24-1603 TCGA-24-1604 TCGA-24-1843 
       56.58        41.06        44.09        90.15        88.34         3.48 
TCGA-24-1930 TCGA-24-2023 TCGA-24-2024 TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 
       81.11        44.84        58.16        14.43        53.95        28.18 
TCGA-24-2036 TCGA-24-2260 TCGA-24-2261 TCGA-24-2295 TCGA-25-1312 TCGA-25-1314 
       64.01        36.16         0.79        33.11         1.02        31.99 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1321 TCGA-25-1323 TCGA-25-1625 
       37.02         1.02        34.98        33.96        12.00        18.02 
TCGA-25-1627 TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-2392 
        0.36        60.59        35.54        14.93        24.99         1.02 
TCGA-25-2393 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-29-1693 TCGA-29-1694 
       38.04        19.99        42.02         2.96       101.75        38.53 
TCGA-29-1695 TCGA-29-1699 TCGA-29-1702 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
        0.79         0.53        18.64        18.25        41.95        29.23 
TCGA-29-1766 TCGA-29-1770 TCGA-29-1774 TCGA-29-1775 TCGA-29-1783 TCGA-29-2425 
       39.09        24.36        17.29        12.36         7.20        65.00 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1856 
       11.47         9.76        38.07        51.91        36.26        15.68 
TCGA-30-1857 TCGA-30-1861 TCGA-30-1866 TCGA-30-1880 TCGA-30-1891 TCGA-31-1953 
        0.26        34.78        36.62        57.57        30.05         6.71 
TCGA-31-1955 TCGA-31-1959 TCGA-36-1569 TCGA-36-1571 TCGA-36-1576 TCGA-36-1580 
       42.51         2.17        29.06        22.85        30.05        24.23 
TCGA-36-2529 TCGA-36-2537 TCGA-36-2540 TCGA-36-2544 TCGA-36-2548 TCGA-36-2552 
       35.05        25.91        23.80        20.98        14.17        11.47 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1585 
        7.56         7.46         1.48        24.03        11.38         1.74 
TCGA-57-1992 TCGA-57-1994 TCGA-59-2351 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
       28.96        25.02       116.12         2.14         5.39        44.78 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1736 TCGA-61-1900 TCGA-61-1910 TCGA-61-1914 
        4.34        31.76        48.79         5.79        37.02        56.58 
TCGA-61-1915 TCGA-61-1919 TCGA-61-1995 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
       67.73        38.17         1.97        14.50        17.98         3.98 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2095 TCGA-61-2096 
       30.61        39.85        30.64         1.18        61.64        58.39 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 
       60.62        65.49        55.50         6.48        76.83        20.68 
TCGA-61-2113 
       22.22 

$`9P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1342 TCGA-04-1348 TCGA-04-1365 
       40.24        41.00         1.81        18.51        48.76        76.54 
TCGA-04-1367 TCGA-04-1514 TCGA-04-1516 TCGA-04-1530 TCGA-04-1644 TCGA-04-1648 
       71.47        56.55        41.59       119.08        48.89        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1654 TCGA-04-1655 TCGA-09-0366 TCGA-09-1664 
       64.64        36.23        47.70        45.34        57.73        74.89 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1672 TCGA-09-1673 
       57.57        61.87        55.36        30.48         5.85         3.02 
TCGA-09-1674 TCGA-09-2043 TCGA-09-2045 TCGA-09-2048 TCGA-09-2050 TCGA-09-2051 
        8.55         6.15        35.15         4.50        71.11        63.09 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0928 TCGA-10-0930 TCGA-10-0933 TCGA-10-0934 
       54.31        25.91        18.48        33.24        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-13-0714 TCGA-13-0720 TCGA-13-0723 
       35.41        35.80        15.12         6.21        44.55        39.58 
TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 
        2.73        12.39        31.07        15.19        17.79        55.17 
TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 
        2.47        11.18        11.38        11.54        34.06        31.04 
TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 
       21.40         8.42        38.93        36.72        28.70        30.35 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 
        8.71         7.79         8.12         8.28         8.19        43.82 
TCGA-13-0807 TCGA-13-0884 TCGA-13-0885 TCGA-13-0887 TCGA-13-0891 TCGA-13-0893 
       13.61       107.18        91.40        66.64        69.01        43.36 
TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0905 
       57.47        56.15        57.07        19.36        47.38        47.84 
TCGA-13-0906 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       44.94        37.08        27.68        34.06        29.98        21.14 
TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
       14.89        13.81         6.41         6.61         7.36         6.05 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1484 TCGA-13-1488 TCGA-13-1492 
       54.61        87.06        61.71        98.04        70.82        73.55 
TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 
        4.24        54.31        37.61        38.37        13.97        32.84 
TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1510 TCGA-13-1511 
       16.57         4.21         4.41         4.77         2.56         3.88 
TCGA-13-1512 TCGA-13-2059 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
        3.09        12.23         6.28        23.05        25.94        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
       72.20        27.48        25.38         2.93         2.66        47.54 
TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1029 TCGA-23-1032 TCGA-23-1109 
       40.54        15.39        26.83         8.81         2.24        51.35 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
       54.51         3.22        31.20         4.57        33.30        86.01 
TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 
        4.27         6.38        39.09        33.47        58.13         0.53 
TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2084 TCGA-23-2641 
       24.95       115.89        87.48        91.66        49.84         2.76 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-1103 TCGA-24-1104 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       54.08        63.55         6.31         6.38         7.82         7.99 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1428 TCGA-24-1434 TCGA-24-1435 
        6.25         6.02         5.95        17.36        18.67        43.53 
TCGA-24-1436 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 
        8.55        45.14       105.99         9.11         3.42         1.18 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1548 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 
       22.19        26.96        16.21        51.91        41.39        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1562 TCGA-24-1563 
       88.50        70.62        39.88        19.53        45.50        47.70 
TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 
       25.87        10.26        17.23        48.33        38.24         8.32 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
        3.72         3.81         4.37        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-2019 
        9.80        22.65        30.21        16.41        11.05         4.87 
TCGA-24-2020 TCGA-24-2026 TCGA-24-2027 TCGA-24-2033 TCGA-24-2038 TCGA-24-2254 
      151.99        34.82       109.68        18.48        44.48        57.07 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
        0.36        47.54        31.63        70.45        44.58         0.82 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 
       67.36        36.23        16.64        55.86        53.26        26.93 
TCGA-25-1315 TCGA-25-1319 TCGA-25-1320 TCGA-25-1322 TCGA-25-1329 TCGA-25-1623 
       51.06        65.00        36.95         2.99         2.96        18.58 
TCGA-25-1626 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1635 
       15.78        20.58         7.86         0.30        56.94        51.22 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2396 TCGA-25-2397 
       18.05        85.05        13.02        49.05         3.02        12.00 
TCGA-25-2398 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
       45.01        29.00        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1701 TCGA-29-1703 
       47.18        33.70        31.17        68.28        16.90        59.67 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1768 
       34.62        17.00        85.68        66.77        62.93        31.23 
TCGA-29-1769 TCGA-29-1771 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 
       22.98        22.52        11.84        12.30        14.93         8.35 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
        5.36        34.62        86.17        62.47        45.11         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-30-1855 TCGA-30-1859 TCGA-30-1860 TCGA-30-1862 
       42.25        11.84         2.47        48.07        44.91         6.08 
TCGA-30-1867 TCGA-30-1887 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 
        1.18        24.26        48.79        45.57        30.18        18.77 
TCGA-31-1951 TCGA-31-1956 TCGA-36-1568 TCGA-36-1570 TCGA-36-1574 TCGA-36-1575 
       22.45        44.09        28.73        21.53        22.55         8.55 
TCGA-36-1577 TCGA-36-1578 TCGA-36-1581 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       25.74        27.85        24.69        33.01        29.49        29.79 
TCGA-36-2538 TCGA-36-2542 TCGA-36-2543 TCGA-36-2545 TCGA-36-2547 TCGA-36-2549 
       25.08        21.60         2.24        18.31        20.52         6.05 
TCGA-36-2551 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2591 TCGA-57-1584 
       16.14        14.30         9.07         9.44         7.63        21.14 
TCGA-57-1586 TCGA-57-1993 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2352 
       22.32        25.05       180.16        80.12        22.32         9.40 
TCGA-59-2354 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 
       34.39        11.11         8.05        20.94        31.40        18.54 
TCGA-61-1728 TCGA-61-1734 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       27.88        28.47        44.84        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
       43.69         1.41         8.42        11.41        13.02         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1911 TCGA-61-1913 TCGA-61-1917 TCGA-61-1918 
       34.13        31.30        42.48        48.92        43.43        15.75 
TCGA-61-1998 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
        5.52        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2110 TCGA-61-2111 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       71.74        44.52       125.72         6.35        31.07         8.58 

      9P LOSS CNV 9P LOSS WILD-TYPE 
             0.26              0.30 
      9P LOSS CNV 9P LOSS WILD-TYPE 
           129.96            180.16 
      9P LOSS CNV 9P LOSS WILD-TYPE 
           29.160            26.945 
[1] "0.3 - 130.0 (29.2)" "0.3 - 180.2 (26.9)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
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      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
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      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D57V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  9P LOSS CNV             0   206                2
  9P LOSS WILD-TYPE       2   342                0
D57V3, multiclass
                  clus
vv                 9P LOSS CNV 9P LOSS WILD-TYPE
  OMENTUM                    0                 2
  OVARY                    206               342
  PERITONEUM OVARY           2                 0
D57V4, continuous
                   vv
clus                I+II III IV
  9P LOSS CNV          1  44 11
  9P LOSS WILD-TYPE    3  89 23
D57V5, multiclass
      clus
vv     9P LOSS CNV 9P LOSS WILD-TYPE
  I+II           1                 3
  III           44                89
  IV            11                23
D57V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS CNV          2  210
  9P LOSS WILD-TYPE    1  349
     clus
vv    9P LOSS CNV 9P LOSS WILD-TYPE
  NO            2                 1
  YES         210               349
                   vv
clus                R0 R1 R2
  9P LOSS CNV        6  7  1
  9P LOSS WILD-TYPE  8 19  1
D57V7, multiclass
    clus
vv   9P LOSS CNV 9P LOSS WILD-TYPE
  R0           6                 8
  R1           7                19
  R2           1                 1

Clustering(58) Variable = 9q loss
D58V1, survival
                   sevent
clus2                 0   1
  9Q LOSS CNV       106 126
  9Q LOSS WILD-TYPE 157 158
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
              232               315 
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
              126               158 
$`9Q LOSS CNV`
TCGA-04-1332 TCGA-04-1336 TCGA-04-1338 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 
       41.00        49.15        46.62        11.87        65.49        63.06 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       21.57        63.98        49.28        32.52        44.32        33.67 
TCGA-04-1371 TCGA-04-1517 TCGA-04-1525 TCGA-04-1542 TCGA-04-1638 TCGA-04-1646 
       82.36        19.99        38.37        84.20        55.40        27.88 
TCGA-04-1649 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0367 TCGA-09-0369 
       64.64        45.34        29.16         9.47        17.95        35.54 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1667 TCGA-09-1669 TCGA-09-1670 TCGA-09-1674 
        9.96        38.43        61.87        30.48        17.98         8.55 
TCGA-09-1675 TCGA-09-2044 TCGA-09-2049 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 
       97.55         6.12       112.37        39.75        20.91        26.93 
TCGA-10-0927 TCGA-10-0936 TCGA-10-0938 TCGA-13-0717 TCGA-13-0751 TCGA-13-0757 
       81.47        35.80        19.86        24.59        55.17        11.18 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0793 TCGA-13-0795 TCGA-13-0803 TCGA-13-0804 
       32.25        31.04        28.70        19.56        43.82        35.28 
TCGA-13-0805 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0888 
       35.28        68.91       107.18        91.40        74.27        70.39 
TCGA-13-0889 TCGA-13-0899 TCGA-13-0904 TCGA-13-0908 TCGA-13-0913 TCGA-13-0921 
       61.81        56.15        48.33        44.84        29.98         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 
        6.41         6.08        10.88         6.05         5.92         6.84 
TCGA-13-1410 TCGA-13-1411 TCGA-13-1483 TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 
        4.70         4.21        29.39        22.39        82.88        52.44 
TCGA-13-1495 TCGA-13-1500 TCGA-13-1507 TCGA-13-1509 TCGA-13-2060 TCGA-13-2061 
       49.22        13.97         4.77         4.14         8.58        10.78 
TCGA-13-2065 TCGA-20-0990 TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-23-1021 
        8.75        25.94        27.48        19.07        16.67        47.54 
TCGA-23-1022 TCGA-23-1028 TCGA-23-1030 TCGA-23-1031 TCGA-23-1111 TCGA-23-1114 
       42.51        49.41        29.10        18.87         3.22        68.68 
TCGA-23-1119 TCGA-23-1123 TCGA-23-2072 TCGA-23-2077 TCGA-23-2643 TCGA-24-0968 
      129.96        33.47        24.95       115.89         4.70        19.63 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0982 TCGA-24-1105 TCGA-24-1413 TCGA-24-1417 
       21.80        41.56        22.32        47.41         6.31         7.82 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1424 TCGA-24-1426 TCGA-24-1431 TCGA-24-1436 
        7.86         0.76         6.02         5.36        19.17         8.55 
TCGA-24-1464 TCGA-24-1469 TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 TCGA-24-1549 
       12.46         9.11         1.18        26.96        57.37        56.58 
TCGA-24-1550 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1603 TCGA-24-1604 
       41.06        19.53        44.09        45.50        90.15        88.34 
TCGA-24-1616 TCGA-24-1843 TCGA-24-1845 TCGA-24-1924 TCGA-24-1930 TCGA-24-2019 
       38.24         3.48         3.81        30.21        81.11         4.87 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2029 TCGA-24-2033 TCGA-24-2035 
       44.84        58.16        34.82        14.43        18.48        28.18 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2267 TCGA-24-2288 TCGA-24-2295 TCGA-25-1312 
       36.16         0.79        47.54         0.82        33.11         1.02 
TCGA-25-1314 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1321 TCGA-25-1323 
       31.99        37.02         1.02        34.98        33.96        12.00 
TCGA-25-1627 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 
        0.36         0.30        60.59        35.54        14.93        24.99 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-29-1693 
        1.02        38.04        45.01        19.99        42.02       101.75 
TCGA-29-1695 TCGA-29-1699 TCGA-29-1702 TCGA-29-1710 TCGA-29-1761 TCGA-29-1763 
        0.79         0.53        18.64        29.23        17.00        66.77 
TCGA-29-1766 TCGA-29-1770 TCGA-29-1774 TCGA-29-1775 TCGA-29-1777 TCGA-29-1783 
       39.09        24.36        17.29        12.36        12.30         7.20 
TCGA-29-2434 TCGA-30-1714 TCGA-30-1853 TCGA-30-1856 TCGA-30-1857 TCGA-30-1861 
       11.47        38.07        36.26        15.68         0.26        34.78 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-31-1944 TCGA-31-1950 TCGA-31-1953 
       36.62         1.18        57.57        45.57        18.77         6.71 
TCGA-31-1955 TCGA-36-1569 TCGA-36-1571 TCGA-36-1576 TCGA-36-1580 TCGA-36-2529 
       42.51        29.06        22.85        30.05        24.23        35.05 
TCGA-36-2537 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2548 TCGA-36-2552 
       25.91         2.24        20.98        18.31        14.17        11.47 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2593 TCGA-57-1582 TCGA-57-1585 TCGA-57-1992 
        7.56         7.46         1.48        24.03         1.74        28.96 
TCGA-59-2351 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1730 TCGA-61-1733 
      116.12         2.14         5.39        44.78         4.34        31.76 
TCGA-61-1736 TCGA-61-1741 TCGA-61-1743 TCGA-61-1899 TCGA-61-1904 TCGA-61-1906 
       48.79        33.67        43.69         8.42         9.07        34.13 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1919 TCGA-61-1995 TCGA-61-2000 TCGA-61-2002 
       56.58        67.73        38.17         1.97        14.50        17.98 
TCGA-61-2003 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2094 TCGA-61-2096 
        3.98        39.85        30.64         1.18        71.74        58.39 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2110 
       60.62        65.49        55.50         6.48        76.83        44.52 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2613 TCGA-61-2614 
      125.72        22.22        31.07         8.58 

$`9Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1337 TCGA-04-1342 TCGA-04-1348 TCGA-04-1351 
       40.24         1.81         2.01        18.51        48.76        65.46 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1514 TCGA-04-1516 TCGA-04-1530 TCGA-04-1536 
       76.54        71.47        56.55        41.59       119.08        29.06 
TCGA-04-1644 TCGA-04-1648 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-09-0366 
       48.89        28.64        36.23        31.86        47.70        57.73 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1668 TCGA-09-1672 
       89.33        74.89        41.59        57.57        55.36         5.85 
TCGA-09-1673 TCGA-09-2043 TCGA-09-2045 TCGA-09-2048 TCGA-09-2050 TCGA-09-2051 
        3.02         6.15        35.15         4.50        71.11        63.09 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 
       12.46        54.31        25.91        18.48        33.24        32.28 
TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0937 TCGA-13-0714 TCGA-13-0720 
       11.70         3.88        35.41        15.12         6.21        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       39.58         2.73        12.39        31.07        15.19        17.79 
TCGA-13-0755 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0766 TCGA-13-0768 
        2.47        11.38        11.54        34.06        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       38.93        36.72        30.35         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0807 TCGA-13-0887 TCGA-13-0890 TCGA-13-0891 
        8.28         8.19        13.61        66.64        67.99        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0905 
       43.36        57.47        57.07        19.36        47.38        47.84 
TCGA-13-0906 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0916 TCGA-13-0919 
       44.94        37.08        27.68        34.06        21.14        14.89 
TCGA-13-0920 TCGA-13-1404 TCGA-13-1405 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
       13.81         6.61         7.36         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 TCGA-13-1492 TCGA-13-1494 
       61.71        98.04        20.68        70.82        73.55        38.17 
TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1501 TCGA-13-1504 
        4.24        54.31        37.61        38.37        32.84        16.57 
TCGA-13-1505 TCGA-13-1506 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 
        4.21         4.41         2.56         3.88         3.09        14.24 
TCGA-13-2059 TCGA-13-2071 TCGA-20-0987 TCGA-20-0991 TCGA-20-0996 TCGA-20-1683 
       12.23         6.28        23.05        26.20        72.20        25.38 
TCGA-20-1686 TCGA-20-1687 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
        2.93         2.66        40.54        15.39        26.83        31.73 
TCGA-23-1029 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1113 TCGA-23-1116 
        8.81         2.24        51.35        54.51        31.20         4.57 
TCGA-23-1117 TCGA-23-1118 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1124 
       33.30        86.01         4.27         6.38        39.09        58.13 
TCGA-23-1809 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
        0.53        87.48        91.66        77.00        49.84         2.76 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0970 TCGA-24-0980 TCGA-24-1103 TCGA-24-1104 
        4.50         7.63        11.64         7.66        54.08        63.55 
TCGA-24-1416 TCGA-24-1418 TCGA-24-1423 TCGA-24-1425 TCGA-24-1427 TCGA-24-1428 
        6.38         7.99         6.25         5.95         4.80        17.36 
TCGA-24-1430 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 TCGA-24-1466 TCGA-24-1467 
       28.34        18.67        43.53        72.92        45.14       105.99 
TCGA-24-1470 TCGA-24-1474 TCGA-24-1546 TCGA-24-1548 TCGA-24-1551 TCGA-24-1552 
        3.42        22.19        64.27        16.21        51.91        41.39 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1563 TCGA-24-1564 
       58.09        88.50        70.62        39.88        47.70        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1614 TCGA-24-1842 TCGA-24-1844 TCGA-24-1846 
       10.26        17.23        48.33         8.32         3.72         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 
       11.28         5.75         5.49         9.80        22.65        16.41 
TCGA-24-1928 TCGA-24-2020 TCGA-24-2027 TCGA-24-2030 TCGA-24-2036 TCGA-24-2038 
       11.05       151.99       109.68        53.95        64.01        44.48 
TCGA-24-2254 TCGA-24-2262 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2289 
       57.07         0.36        31.63        70.45        44.58        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1315 
       36.23        16.64        55.86        53.26        26.93        51.06 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1322 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 
       65.00        36.95         2.99         2.96        18.58        18.02 
TCGA-25-1626 TCGA-25-1628 TCGA-25-1630 TCGA-25-1632 TCGA-25-1635 TCGA-25-1877 
       15.78        20.58         7.86        56.94        51.22        18.05 
TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2396 TCGA-25-2397 TCGA-25-2401 
       85.05        13.02        49.05         3.02        12.00         2.96 
TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 
       29.00        30.97        26.96        78.87        44.71        47.18 
TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1701 TCGA-29-1703 
       38.53        33.70        31.17        68.28        16.90        59.67 
TCGA-29-1705 TCGA-29-1707 TCGA-29-1711 TCGA-29-1762 TCGA-29-1764 TCGA-29-1768 
       18.25        41.95        34.62        85.68        62.93        31.23 
TCGA-29-1769 TCGA-29-1771 TCGA-29-1776 TCGA-29-1778 TCGA-29-1781 TCGA-29-1784 
       22.98        22.52        11.84        14.93         8.35         5.36 
TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
       34.62        86.17        65.00        62.47        45.11         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2436 TCGA-30-1718 TCGA-30-1855 TCGA-30-1859 
       42.25        11.84         9.76        51.91         2.47        48.07 
TCGA-30-1860 TCGA-30-1862 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1946 
       44.91         6.08        24.26        30.05        48.79        30.18 
TCGA-31-1951 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1570 TCGA-36-1574 
       22.45        44.09         2.17        28.73        21.53        22.55 
TCGA-36-1575 TCGA-36-1577 TCGA-36-1578 TCGA-36-1581 TCGA-36-2530 TCGA-36-2532 
        8.55        25.74        27.85        24.69        33.01        29.49 
TCGA-36-2534 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2547 TCGA-36-2549 
       29.79        25.08        23.80        21.60        20.52         6.05 
TCGA-36-2551 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2591 TCGA-57-1583 
       16.14        14.30         9.07         9.44         7.63        11.38 
TCGA-57-1584 TCGA-57-1586 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       21.14        22.32        25.05        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2352 TCGA-59-2354 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
       22.32         9.40        34.39        11.11         8.05        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1734 TCGA-61-1737 TCGA-61-1738 
       31.40        18.54        27.88        28.47        44.84        35.80 
TCGA-61-1740 TCGA-61-1895 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1907 
        2.43         1.41         5.79        11.41        13.02        31.30 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1917 TCGA-61-1918 TCGA-61-1998 
       37.02        42.48        48.92        43.43        15.75         5.52 
TCGA-61-2008 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
       30.61        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2095 TCGA-61-2109 TCGA-61-2612 
       61.64        20.68         6.35 

      9Q LOSS CNV 9Q LOSS WILD-TYPE 
             0.26              0.36 
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
           129.96            180.16 
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
            29.01             27.68 
[1] "0.3 - 130.0 (29.0)" "0.4 - 180.2 (27.7)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
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      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
[1] "hr=" "1.1"
D58V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  9Q LOSS CNV             0   233                2
  9Q LOSS WILD-TYPE       2   315                0
D58V3, multiclass
                  clus
vv                 9Q LOSS CNV 9Q LOSS WILD-TYPE
  OMENTUM                    0                 2
  OVARY                    233               315
  PERITONEUM OVARY           2                 0
D58V4, continuous
                   vv
clus                I+II III IV
  9Q LOSS CNV          2  54 12
  9Q LOSS WILD-TYPE    2  79 22
D58V5, multiclass
      clus
vv     9Q LOSS CNV 9Q LOSS WILD-TYPE
  I+II           2                 2
  III           54                79
  IV            12                22
D58V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS CNV          2  238
  9Q LOSS WILD-TYPE    1  321
     clus
vv    9Q LOSS CNV 9Q LOSS WILD-TYPE
  NO            2                 1
  YES         238               321
                   vv
clus                R0 R1 R2
  9Q LOSS CNV        6  9  1
  9Q LOSS WILD-TYPE  8 17  1
D58V7, multiclass
    clus
vv   9Q LOSS CNV 9Q LOSS WILD-TYPE
  R0           6                 8
  R1           9                17
  R2           1                 1

Clustering(59) Variable = 10p loss
D59V1, survival
                    sevent
clus2                  0   1
  10P LOSS CNV        29  33
  10P LOSS WILD-TYPE 234 251
      10P LOSS CNV 10P LOSS WILD-TYPE 
                62                485 
      10P LOSS CNV 10P LOSS WILD-TYPE 
                33                251 
$`10P LOSS CNV`
TCGA-04-1371 TCGA-04-1648 TCGA-09-0364 TCGA-09-0366 TCGA-09-2043 TCGA-09-2053 
       82.36        28.64        29.16        57.73         6.15        39.75 
TCGA-10-0938 TCGA-13-0724 TCGA-13-0803 TCGA-13-0889 TCGA-13-0893 TCGA-13-0904 
       19.86         2.73        43.82        61.81        43.36        48.33 
TCGA-13-0921 TCGA-13-1408 TCGA-13-1489 TCGA-13-1500 TCGA-13-1507 TCGA-20-1684 
        4.64         5.92        82.88        13.97         4.77        19.07 
TCGA-23-1114 TCGA-23-2072 TCGA-23-2078 TCGA-24-0979 TCGA-24-1104 TCGA-24-1416 
       68.68        24.95        87.48        41.56        63.55         6.38 
TCGA-24-1425 TCGA-24-1435 TCGA-24-1466 TCGA-24-1467 TCGA-24-1471 TCGA-24-1557 
        5.95        43.53        45.14       105.99         1.18        39.88 
TCGA-24-1614 TCGA-24-2026 TCGA-24-2030 TCGA-24-2254 TCGA-24-2280 TCGA-24-2297 
       48.33        34.82        53.95        57.07        70.45        55.86 
TCGA-24-2298 TCGA-25-1313 TCGA-25-1625 TCGA-25-1632 TCGA-25-2393 TCGA-29-1697 
       53.26        26.93        18.02        56.94        38.04        31.17 
TCGA-29-1699 TCGA-29-1761 TCGA-29-1769 TCGA-30-1714 TCGA-30-1855 TCGA-31-1951 
        0.53        17.00        22.98        38.07         2.47        22.45 
TCGA-31-1959 TCGA-36-2532 TCGA-36-2534 TCGA-36-2538 TCGA-36-2542 TCGA-36-2544 
        2.17        29.49        29.79        25.08        21.60        20.98 
TCGA-36-2547 TCGA-42-2589 TCGA-61-1724 TCGA-61-1734 TCGA-61-1737 TCGA-61-1743 
       20.52         7.56        20.94        28.47        44.84        43.69 
TCGA-61-1913 TCGA-61-2094 
       48.92        71.74 

$`10P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       63.98        65.46        49.28        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 
       76.54        71.47        56.55        41.59        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
      119.08        29.06        84.20        55.40        48.89        27.88 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0365 
       64.64        36.23        31.86        47.70        45.34         9.47 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
       17.95        35.54         9.96        38.43        89.33        74.89 
TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 
       41.59        57.57        61.87        55.36        30.48        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2044 TCGA-09-2045 
        5.85         3.02         8.55        97.55         6.12        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2054 TCGA-09-2055 
        4.50       112.37        71.11        63.09        20.91        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
       12.46        54.31        25.91        81.47        18.48        33.24 
TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 
       32.28        11.70         3.88        35.41        35.80        15.12 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0725 TCGA-13-0726 
        6.21        24.59        44.55        39.58        12.39        31.07 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       15.19        17.79        55.17         2.47        11.18        11.38 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.54        34.06        32.25        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 
       38.93        36.72        28.70        30.35        19.56         8.71 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0804 TCGA-13-0805 
        7.79         8.12         8.28         8.19        35.28        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       13.61        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0888 TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       70.39        67.99        69.01        57.47        56.15        57.07 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       19.36        47.38        47.84        44.94        44.84        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 
       27.68        34.06        29.98        21.14        14.89        13.81 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
        6.41         6.08        10.88         6.61         7.36         6.05 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        6.84         4.70         4.21         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
       61.71        29.39        98.04        20.68        22.39        70.82 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 
       52.44        73.55        38.17        49.22         4.24        54.31 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       37.61        38.37        32.84        16.57         4.21         4.41 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 
        4.14         2.56         3.88         3.09        14.24        12.23 
TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 
        8.58        10.78         8.75         6.28        23.05        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1685 TCGA-20-1686 
       26.20        72.20        27.48        25.38        16.67         2.93 
TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 
        2.66        47.54        42.51        40.54        15.39        26.83 
TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       31.73        49.41         8.81        29.10        18.87         2.24 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 
       51.35        54.51         3.22        31.20         4.57        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 
       86.01       129.96         4.27         6.38        39.09        33.47 
TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 
       58.13         0.53       115.89        91.66        77.00        49.84 
TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
        2.76         4.70         4.50         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1105 TCGA-24-1413 
       21.80         7.66        22.32        54.08        47.41         6.31 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 
        7.82         7.99         7.86         0.76         6.25         6.02 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 
        5.36         4.80        17.36        28.34        19.17        18.67 
TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 
        8.55        72.92        12.46         9.11         3.42        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 
       26.96        57.37        64.27        16.21        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1558 
       51.91        41.39        58.09        88.50        70.62        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 
       90.15        88.34        38.24         8.32         3.48         3.72 
TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.81         4.37        11.28         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 
       22.65        30.21        16.41        11.05        81.11         4.87 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 TCGA-24-2033 
      151.99        44.84        58.16       109.68        14.43        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 
       28.18        64.01        44.48        36.16         0.79         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 
       47.54        31.63        44.58         0.82        67.36        36.23 
TCGA-24-2293 TCGA-24-2295 TCGA-25-1312 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       16.64        33.11         1.02        31.99        51.06        37.02 
TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 
        1.02        34.98        65.00        36.95        33.96         2.99 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
       12.00         2.96        18.58        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 
        7.86         0.30        60.59        35.54        51.22        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       24.99        18.05        85.05        13.02        49.05         1.02 
TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 
        3.02        12.00        45.01        19.99        42.02         2.96 
TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 
       29.00        30.97        26.96        78.87        44.71        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1698 TCGA-29-1701 
      101.75        38.53         0.79        33.70        68.28        16.90 
TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 
       18.64        59.67        18.25        41.95        29.23        34.62 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1770 
       85.68        66.77        62.93        39.09        31.23        24.36 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       22.52        17.29        12.36        11.84        12.30        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
        8.35         7.20         5.36        34.62        86.17        65.00 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 
       62.47        45.11         4.87        42.25        11.84        11.47 
TCGA-29-2436 TCGA-30-1718 TCGA-30-1853 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 
        9.76        51.91        36.26        15.68         0.26        48.07 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 
       44.91        34.78         6.08        36.62         1.18        57.57 
TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 
       24.26        30.05        48.79        45.57        30.18        18.77 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
        6.71        42.51        44.09        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       22.85        22.55         8.55        30.05        25.74        27.85 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2537 TCGA-36-2540 
       24.23        24.69        35.05        33.01        25.91        23.80 
TCGA-36-2543 TCGA-36-2545 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 
        2.24        18.31        14.17         6.05        16.14        11.47 
TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 
       14.30         9.07         9.44         7.46         7.63         1.48 
TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 
       24.03        11.38        21.14         1.74        22.32        28.96 
TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 
       25.05        25.02       180.16        80.12        22.32       116.12 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 
        9.40        34.39         2.14         5.39        44.78        11.11 
TCGA-61-1722 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 
        8.05        31.40        18.54        27.88         4.34        31.76 
TCGA-61-1736 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1895 TCGA-61-1899 
       48.79        35.80         2.43        33.67         1.41         8.42 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 
        5.79        11.41        13.02         9.07        34.13        31.30 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
       37.02        42.48        56.58        67.73        43.43        15.75 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
       38.17         1.97         5.52        14.50        17.98         3.98 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 
       30.61        39.85        30.64         1.18        45.96        45.40 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 
        4.80         4.77        51.72        61.64        58.39        60.62 
TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       65.49        55.50         6.48        76.83        20.68        44.52 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
      125.72        22.22         6.35        31.07         8.58 

      10P LOSS CNV 10P LOSS WILD-TYPE 
              0.53               0.26 
      10P LOSS CNV 10P LOSS WILD-TYPE 
            105.99             180.16 
      10P LOSS CNV 10P LOSS WILD-TYPE 
             30.48              27.48 
[1] "0.5 - 106.0 (30.5)" "0.3 - 180.2 (27.5)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"10P LOSS WILD-TYPE"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
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      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" 
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        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"10P LOSS WILD-TYPE"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2614 
"10P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D59V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  10P LOSS CNV             0    63                0
  10P LOSS WILD-TYPE       2   485                2
D59V3, multiclass
                  clus
vv                 10P LOSS CNV 10P LOSS WILD-TYPE
  OMENTUM                     0                  2
  OVARY                      63                485
  PERITONEUM OVARY            0                  2
D59V4, continuous
                    vv
clus                 I+II III  IV
  10P LOSS CNV          1  12   5
  10P LOSS WILD-TYPE    3 121  29
D59V5, multiclass
      clus
vv     10P LOSS CNV 10P LOSS WILD-TYPE
  I+II            1                  3
  III            12                121
  IV              5                 29
D59V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS CNV          1   65
  10P LOSS WILD-TYPE    2  494
     clus
vv    10P LOSS CNV 10P LOSS WILD-TYPE
  NO             1                  2
  YES           65                494
                    vv
clus                 R0 R1 R2
  10P LOSS CNV        3  4  0
  10P LOSS WILD-TYPE 11 22  2
D59V7, multiclass
    clus
vv   10P LOSS CNV 10P LOSS WILD-TYPE
  R0            3                 11
  R1            4                 22
  R2            0                  2

Clustering(60) Variable = 10q loss
D60V1, survival
                    sevent
clus2                  0   1
  10Q LOSS CNV        43  44
  10Q LOSS WILD-TYPE 220 240
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
                87                460 
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
                44                240 
$`10Q LOSS CNV`
TCGA-04-1343 TCGA-04-1648 TCGA-04-1649 TCGA-09-0364 TCGA-09-0366 TCGA-09-0369 
       11.87        28.64        64.64        29.16        57.73        35.54 
TCGA-09-1673 TCGA-09-2043 TCGA-09-2053 TCGA-10-0935 TCGA-10-0938 TCGA-13-0724 
        3.02         6.15        39.75        35.41        19.86         2.73 
TCGA-13-0751 TCGA-13-0764 TCGA-13-0794 TCGA-13-0800 TCGA-13-0803 TCGA-13-0807 
       55.17        31.04        30.35         8.12        43.82        13.61 
TCGA-13-0889 TCGA-13-0891 TCGA-13-0893 TCGA-13-0904 TCGA-13-0911 TCGA-13-0916 
       61.81        69.01        43.36        48.33        27.68        21.14 
TCGA-13-0921 TCGA-13-1408 TCGA-13-1489 TCGA-13-1496 TCGA-13-1497 TCGA-13-1507 
        4.64         5.92        82.88         4.24        54.31         4.77 
TCGA-20-1684 TCGA-20-1686 TCGA-23-1114 TCGA-23-2072 TCGA-24-0979 TCGA-24-1104 
       19.07         2.93        68.68        24.95        41.56        63.55 
TCGA-24-1416 TCGA-24-1430 TCGA-24-1434 TCGA-24-1435 TCGA-24-1466 TCGA-24-1467 
        6.38        28.34        18.67        43.53        45.14       105.99 
TCGA-24-1471 TCGA-24-1557 TCGA-24-1614 TCGA-24-2026 TCGA-24-2030 TCGA-24-2254 
        1.18        39.88        48.33        34.82        53.95        57.07 
TCGA-24-2280 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1632 TCGA-25-1635 
       70.45        55.86        53.26        26.93        56.94        51.22 
TCGA-29-1699 TCGA-29-1703 TCGA-29-1761 TCGA-29-1769 TCGA-29-1770 TCGA-29-1778 
        0.53        59.67        17.00        22.98        24.36        14.93 
TCGA-30-1714 TCGA-30-1855 TCGA-30-1856 TCGA-30-1859 TCGA-31-1944 TCGA-31-1951 
       38.07         2.47        15.68        48.07        45.57        22.45 
TCGA-31-1953 TCGA-31-1959 TCGA-36-1577 TCGA-36-1581 TCGA-36-2532 TCGA-36-2534 
        6.71         2.17        25.74        24.69        29.49        29.79 
TCGA-36-2538 TCGA-36-2542 TCGA-36-2543 TCGA-36-2547 TCGA-42-2589 TCGA-61-1724 
       25.08        21.60         2.24        20.52         7.56        20.94 
TCGA-61-1734 TCGA-61-1737 TCGA-61-1743 TCGA-61-1913 TCGA-61-2012 TCGA-61-2088 
       28.47        44.84        43.69        48.92        30.64         4.77 
TCGA-61-2094 TCGA-61-2102 TCGA-61-2113 
       71.74         6.48        22.22 

$`10Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       18.51        65.49        63.06        48.76        21.57        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       65.46        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 
       71.47        82.36        56.55        41.59        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
      119.08        29.06        84.20        55.40        48.89        27.88 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0365 TCGA-09-0367 
       36.23        31.86        47.70        45.34         9.47        17.95 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 
        9.96        38.43        89.33        74.89        41.59        57.57 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1674 
       61.87        55.36        30.48        17.98         5.85         8.55 
TCGA-09-1675 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
       97.55         6.12        35.15         4.50       112.37        71.11 
TCGA-09-2051 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       63.09        20.91        26.93        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       81.47        18.48        33.24        32.28        11.70         3.88 
TCGA-10-0936 TCGA-10-0937 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 
       35.80        15.12         6.21        24.59        44.55        39.58 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0755 TCGA-13-0757 
       12.39        31.07        15.19        17.79         2.47        11.18 
TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0766 TCGA-13-0768 
       11.38        11.54        34.06        32.25        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       38.93        36.72        28.70        19.56         8.71         7.79 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0804 TCGA-13-0805 TCGA-13-0883 TCGA-13-0884 
        8.28         8.19        35.28        35.28        68.91       107.18 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0890 TCGA-13-0897 
       91.40        74.27        66.64        70.39        67.99        57.47 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0905 TCGA-13-0906 
       56.15        57.07        19.36        47.38        47.84        44.94 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0912 TCGA-13-0913 TCGA-13-0919 TCGA-13-0920 
       44.84        37.08        34.06        29.98        14.89        13.81 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
        6.41         6.08        10.88         6.61         7.36         6.05 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        6.84         4.70         4.21         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
       61.71        29.39        98.04        20.68        22.39        70.82 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1498 TCGA-13-1499 
       52.44        73.55        38.17        49.22        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1509 
       13.97        32.84        16.57         4.21         4.41         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 
        2.56         3.88         3.09        14.24        12.23         8.58 
TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
       10.78         8.75         6.28        23.05        25.94        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1685 TCGA-20-1687 TCGA-23-1021 
       72.20        27.48        25.38        16.67         2.66        47.54 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       42.51        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
        3.22        31.20         4.57        33.30        86.01       129.96 
TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 
        4.27         6.38        39.09        33.47        58.13         0.53 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
      115.89        87.48        91.66        77.00        49.84         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        4.70         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1105 TCGA-24-1413 TCGA-24-1417 
        7.66        22.32        54.08        47.41         6.31         7.82 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 
        7.99         7.86         0.76         6.25         6.02         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1431 TCGA-24-1436 TCGA-24-1463 
        5.36         4.80        17.36        19.17         8.55        72.92 
TCGA-24-1464 TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 
       12.46         9.11         3.42        22.19        26.96        57.37 
TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
       64.27        16.21        56.58        41.06        51.91        41.39 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       58.09        88.50        70.62        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
       47.70        25.87        10.26        17.23        90.15        88.34 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 
       38.24         8.32         3.48         3.72         3.81         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 
       11.28         5.75         5.49         9.80        22.65        30.21 
TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 
       16.41        11.05        81.11         4.87       151.99        44.84 
TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 
       58.16       109.68        14.43        18.48        28.18        64.01 
TCGA-24-2038 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       44.48        36.16         0.79         0.36        47.54        31.63 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 
       44.58         0.82        67.36        36.23        16.64        33.11 
TCGA-25-1312 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 
        1.02        31.99        51.06        37.02         1.02        34.98 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 
       65.00        36.95        33.96         2.99        12.00         2.96 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 
       18.58        18.02        15.78         0.36        20.58         7.86 
TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 
        0.30        60.59        35.54        14.93        24.99        18.05 
TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 
       85.05        13.02        49.05         1.02        38.04         3.02 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 
       12.00        45.01        19.99        42.02         2.96        29.00 
TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 
       30.97        26.96        78.87        44.71        47.18       101.75 
TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1701 
       38.53         0.79        33.70        31.17        68.28        16.90 
TCGA-29-1702 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1762 
       18.64        18.25        41.95        29.23        34.62        85.68 
TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1771 TCGA-29-1774 
       66.77        62.93        39.09        31.23        22.52        17.29 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 
       12.36        11.84        12.30         8.35         7.20         5.36 
TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
       34.62        86.17        65.00        62.47        45.11         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1718 TCGA-30-1853 
       42.25        11.84        11.47         9.76        51.91        36.26 
TCGA-30-1857 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 
        0.26        44.91        34.78         6.08        36.62         1.18 
TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1946 TCGA-31-1950 
       57.57        24.26        30.05        48.79        30.18        18.77 
TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       42.51        44.09        28.73        29.06        21.53        22.85 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1578 TCGA-36-1580 TCGA-36-2529 
       22.55         8.55        30.05        27.85        24.23        35.05 
TCGA-36-2530 TCGA-36-2537 TCGA-36-2540 TCGA-36-2544 TCGA-36-2545 TCGA-36-2548 
       33.01        25.91        23.80        20.98        18.31        14.17 
TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 
        6.05        16.14        11.47        14.30         9.07         9.44 
TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 
        7.46         7.63         1.48        24.03        11.38        21.14 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 
        1.74        22.32        28.96        25.05        25.02       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 
       80.12        22.32       116.12         9.40        34.39         2.14 
TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1725 TCGA-61-1727 
        5.39        44.78        11.11         8.05        31.40        18.54 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1736 TCGA-61-1738 TCGA-61-1740 
       27.88         4.34        31.76        48.79        35.80         2.43 
TCGA-61-1741 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
       33.67         1.41         8.42         5.79        11.41        13.02 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1914 
        9.07        34.13        31.30        37.02        42.48        56.58 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       67.73        43.43        15.75        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2016 
       14.50        17.98         3.98        30.61        39.85         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2092 TCGA-61-2095 TCGA-61-2096 
       45.96        45.40         4.80        51.72        61.64        58.39 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       60.62        65.49        55.50        76.83        20.68        44.52 
TCGA-61-2111 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
      125.72         6.35        31.07         8.58 

      10Q LOSS CNV 10Q LOSS WILD-TYPE 
              0.53               0.26 
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
            105.99             180.16 
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
            28.640             27.865 
[1] "0.5 - 106.0 (28.6)" "0.3 - 180.2 (27.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
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"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
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        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
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      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
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        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
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        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
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"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
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      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
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"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
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"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
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"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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"10Q LOSS WILD-TYPE" 
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      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
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"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
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      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
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        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-2614 
"10Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D60V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  10Q LOSS CNV             0    87                0
  10Q LOSS WILD-TYPE       2   461                2
D60V3, multiclass
                  clus
vv                 10Q LOSS CNV 10Q LOSS WILD-TYPE
  OMENTUM                     0                  2
  OVARY                      87                461
  PERITONEUM OVARY            0                  2
D60V4, continuous
                    vv
clus                 I+II III  IV
  10Q LOSS CNV          1  20   8
  10Q LOSS WILD-TYPE    3 113  26
D60V5, multiclass
      clus
vv     10Q LOSS CNV 10Q LOSS WILD-TYPE
  I+II            1                  3
  III            20                113
  IV              8                 26
D60V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS CNV          3   87
  10Q LOSS WILD-TYPE    0  472
     clus
vv    10Q LOSS CNV 10Q LOSS WILD-TYPE
  NO             3                  0
  YES           87                472
                    vv
clus                 R0 R1 R2
  10Q LOSS CNV        3  6  0
  10Q LOSS WILD-TYPE 11 20  2
D60V7, multiclass
    clus
vv   10Q LOSS CNV 10Q LOSS WILD-TYPE
  R0            3                 11
  R1            6                 20
  R2            0                  2

Clustering(61) Variable = 11p loss
D61V1, survival
                    sevent
clus2                  0   1
  11P LOSS CNV        58  80
  11P LOSS WILD-TYPE 205 204
      11P LOSS CNV 11P LOSS WILD-TYPE 
               138                409 
      11P LOSS CNV 11P LOSS WILD-TYPE 
                80                204 
$`11P LOSS CNV`
TCGA-04-1331 TCGA-04-1338 TCGA-04-1347 TCGA-04-1351 TCGA-04-1356 TCGA-04-1367 
       40.24        46.62        63.06        65.46        49.28        71.47 
TCGA-04-1517 TCGA-04-1536 TCGA-04-1542 TCGA-04-1644 TCGA-04-1648 TCGA-04-1649 
       19.99        29.06        84.20        48.89        28.64        64.64 
TCGA-09-0366 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1666 TCGA-09-1667 
       57.73        35.54         9.96        38.43        57.57        61.87 
TCGA-09-1674 TCGA-09-2053 TCGA-10-0926 TCGA-10-0928 TCGA-10-0930 TCGA-10-0937 
        8.55        39.75        25.91        18.48        33.24        15.12 
TCGA-10-0938 TCGA-13-0723 TCGA-13-0751 TCGA-13-0758 TCGA-13-0802 TCGA-13-0804 
       19.86        39.58        55.17        11.38         8.19        35.28 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0904 TCGA-13-0908 TCGA-13-0913 
       56.15        57.07        19.36        48.33        44.84        29.98 
TCGA-13-0920 TCGA-13-0921 TCGA-13-1404 TCGA-13-1409 TCGA-13-1477 TCGA-13-1482 
       13.81         4.64         6.61         6.84        54.61        61.71 
TCGA-13-1483 TCGA-13-1487 TCGA-13-1489 TCGA-13-1494 TCGA-13-1495 TCGA-13-1500 
       29.39        22.39        82.88        38.17        49.22        13.97 
TCGA-13-1505 TCGA-13-1507 TCGA-13-1512 TCGA-13-2060 TCGA-13-2065 TCGA-20-0990 
        4.21         4.77         3.09         8.58         8.75        25.94 
TCGA-20-1683 TCGA-20-1686 TCGA-20-1687 TCGA-23-1022 TCGA-23-1027 TCGA-23-1113 
       25.38         2.93         2.66        42.51        31.73        31.20 
TCGA-23-1114 TCGA-23-1122 TCGA-23-2077 TCGA-23-2643 TCGA-24-0968 TCGA-24-0970 
       68.68        39.09       115.89         4.70        19.63        11.64 
TCGA-24-1105 TCGA-24-1418 TCGA-24-1427 TCGA-24-1463 TCGA-24-1466 TCGA-24-1474 
       47.41         7.99         4.80        72.92        45.14        22.19 
TCGA-24-1544 TCGA-24-1549 TCGA-24-1562 TCGA-24-1567 TCGA-24-1846 TCGA-24-1920 
       26.96        56.58        45.50        17.23         4.37         9.80 
TCGA-24-1930 TCGA-24-2019 TCGA-24-2026 TCGA-24-2027 TCGA-24-2254 TCGA-24-2260 
       81.11         4.87        34.82       109.68        57.07        36.16 
TCGA-24-2267 TCGA-24-2280 TCGA-24-2295 TCGA-24-2298 TCGA-25-1313 TCGA-25-1318 
       47.54        70.45        33.11        53.26        26.93        34.98 
TCGA-25-1319 TCGA-25-1323 TCGA-25-1329 TCGA-25-1630 TCGA-25-1631 TCGA-25-1634 
       65.00        12.00         2.96         7.86         0.30        35.54 
TCGA-25-1870 TCGA-25-1871 TCGA-25-2392 TCGA-25-2393 TCGA-29-1688 TCGA-29-1695 
       14.93        24.99         1.02        38.04        78.87         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1702 TCGA-29-1703 TCGA-29-1711 TCGA-29-1762 
       33.70        31.17        18.64        59.67        34.62        85.68 
TCGA-29-1769 TCGA-29-1777 TCGA-29-2414 TCGA-29-2428 TCGA-29-2434 TCGA-30-1853 
       22.98        12.30        86.17        45.11        11.47        36.26 
TCGA-30-1861 TCGA-30-1866 TCGA-30-1887 TCGA-31-1950 TCGA-31-1953 TCGA-36-1571 
       34.78        36.62        24.26        18.77         6.71        22.85 
TCGA-36-1577 TCGA-36-1581 TCGA-36-2538 TCGA-57-1582 TCGA-59-2372 TCGA-61-1724 
       25.74        24.69        25.08        24.03        44.78        20.94 
TCGA-61-1725 TCGA-61-1733 TCGA-61-1906 TCGA-61-1910 TCGA-61-1917 TCGA-61-1919 
       31.40        31.76        34.13        37.02        43.43        38.17 
TCGA-61-2002 TCGA-61-2018 TCGA-61-2088 TCGA-61-2094 TCGA-61-2102 TCGA-61-2111 
       17.98        45.40         4.77        71.74         6.48       125.72 

$`11P LOSS WILD-TYPE`
TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 TCGA-04-1343 
       41.00         1.81        49.15         2.01        18.51        11.87 
TCGA-04-1346 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1361 TCGA-04-1362 
       65.49        48.76        21.57        63.98        32.52        44.32 
TCGA-04-1364 TCGA-04-1365 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1525 
       33.67        76.54        82.36        56.55        41.59        38.37 
TCGA-04-1530 TCGA-04-1638 TCGA-04-1646 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 
      119.08        55.40        27.88        36.23        31.86        47.70 
TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0367 TCGA-09-1662 TCGA-09-1664 
       45.34        29.16         9.47        17.95        89.33        74.89 
TCGA-09-1665 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       41.59        55.36        30.48        17.98         5.85         3.02 
TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 
       97.55         6.15         6.12        35.15         4.50       112.37 
TCGA-09-2050 TCGA-09-2051 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       71.11        63.09        20.91        26.93        12.46        54.31 
TCGA-10-0927 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       81.47        32.28        11.70         3.88        35.41        35.80 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 
        6.21        24.59        44.55         2.73        12.39        31.07 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0755 TCGA-13-0757 TCGA-13-0760 TCGA-13-0761 
       15.19        17.79         2.47        11.18        11.54        34.06 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       32.25        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       28.70        30.35        19.56         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0803 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 
        8.28        43.82        35.28        13.61        68.91       107.18 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 
       91.40        74.27        66.64        70.39        61.81        67.99 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0903 TCGA-13-0905 TCGA-13-0906 
       69.01        43.36        57.47        47.38        47.84        44.94 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0916 TCGA-13-0919 TCGA-13-0923 
       37.08        27.68        34.06        21.14        14.89         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 
        6.08        10.88         7.36         6.05         5.92         4.70 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1481 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 
        4.21         5.33        87.06        98.04        20.68        70.82 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       52.44        73.55         4.24        54.31        37.61        38.37 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1506 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
       32.84        16.57         4.41         4.14         2.56         3.88 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2061 TCGA-13-2071 TCGA-20-0987 TCGA-20-0991 
       14.24        12.23        10.78         6.28        23.05        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-23-1021 TCGA-23-1023 
       72.20        27.48        19.07        16.67        47.54        40.54 
TCGA-23-1024 TCGA-23-1026 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       15.39        26.83        49.41         8.81        29.10        18.87 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1116 TCGA-23-1117 
        2.24        51.35        54.51         3.22         4.57        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1123 TCGA-23-1124 
       86.01       129.96         4.27         6.38        33.47        58.13 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 
        0.53        24.95        87.48        91.66        77.00        49.84 
TCGA-23-2641 TCGA-23-2645 TCGA-24-0966 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        2.76         4.50         7.63        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 
       22.32        54.08        63.55         6.31         6.38         7.82 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 
        7.86         0.76         6.25         6.02         5.95         5.36 
TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 
       17.36        28.34        19.17        18.67        43.53         8.55 
TCGA-24-1464 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1545 
       12.46       105.99         9.11         3.42         1.18        57.37 
TCGA-24-1546 TCGA-24-1548 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 
       64.27        16.21        41.06        51.91        41.39        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1563 
       88.50        70.62        39.88        19.53        44.09        47.70 
TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 
       25.87        10.26        90.15        88.34        48.33        38.24 
TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1847 TCGA-24-1849 
        8.32         3.48         3.72         3.81        11.28         5.75 
TCGA-24-1850 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-2020 
        5.49        22.65        30.21        16.41        11.05       151.99 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 
       44.84        58.16        14.43        53.95        18.48        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2261 TCGA-24-2262 TCGA-24-2271 TCGA-24-2281 
       64.01        44.48         0.79         0.36        31.63        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 TCGA-25-1312 
        0.82        67.36        36.23        16.64        55.86         1.02 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1320 TCGA-25-1321 
       31.99        51.06        37.02         1.02        36.95        33.96 
TCGA-25-1322 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
        2.99        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1635 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
       56.94        60.59        51.22        18.05        85.05        13.02 
TCGA-25-2391 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
       49.05         3.02        12.00        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1690 TCGA-29-1691 
        2.96        29.00        30.97        26.96        44.71        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1705 
      101.75        38.53        68.28         0.53        16.90        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1761 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 
       41.95        29.23        17.00        66.77        62.93        39.09 
TCGA-29-1768 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 
       31.23        24.36        22.52        17.29        12.36        11.84 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2425 
       14.93         8.35         7.20         5.36        34.62        65.00 
TCGA-29-2427 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2436 TCGA-30-1714 
       62.47         4.87        42.25        11.84         9.76        38.07 
TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 
       51.91         2.47        15.68         0.26        48.07        44.91 
TCGA-30-1862 TCGA-30-1867 TCGA-30-1880 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 
        6.08         1.18        57.57        30.05        48.79        45.57 
TCGA-31-1946 TCGA-31-1951 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 
       30.18        22.45        42.51        44.09         2.17        28.73 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1578 
       29.06        21.53        22.55         8.55        30.05        27.85 
TCGA-36-1580 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       24.23        35.05        33.01        29.49        29.79        25.91 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       23.80        21.60         2.24        20.98        18.31        20.52 
TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 
       14.17         6.05        16.14        11.47        14.30         9.07 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1583 
        9.44         7.56         7.46         7.63         1.48        11.38 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 
       21.14         1.74        22.32        28.96        25.05        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 
      180.16        80.12        22.32       116.12         9.40        34.39 
TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 TCGA-61-1722 TCGA-61-1727 TCGA-61-1728 
        2.14         5.39        11.11         8.05        18.54        27.88 
TCGA-61-1730 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
        4.34        28.47        48.79        44.84        35.80         2.43 
TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 
       33.67        43.69         1.41         8.42         5.79        11.41 
TCGA-61-1903 TCGA-61-1904 TCGA-61-1907 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
       13.02         9.07        31.30        42.48        48.92        56.58 
TCGA-61-1915 TCGA-61-1918 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2003 
       67.73        15.75         1.97         5.52        14.50         3.98 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2087 
       30.61        39.85        30.64         1.18        45.96         4.80 
TCGA-61-2092 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
       51.72        61.64        58.39        60.62        65.49        55.50 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 
       76.83        20.68        44.52        22.22         6.35        31.07 
TCGA-61-2614 
        8.58 

      11P LOSS CNV 11P LOSS WILD-TYPE 
              0.30               0.26 
      11P LOSS CNV 11P LOSS WILD-TYPE 
            125.72             180.16 
      11P LOSS CNV 11P LOSS WILD-TYPE 
            31.745             26.830 
[1] "0.3 - 125.7 (31.7)" "0.3 - 180.2 (26.8)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
      "11P LOSS CNV"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-2614 
"11P LOSS WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-2614 
"11P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D61V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  11P LOSS CNV             0   140                0
  11P LOSS WILD-TYPE       2   408                2
D61V3, multiclass
                  clus
vv                 11P LOSS CNV 11P LOSS WILD-TYPE
  OMENTUM                     0                  2
  OVARY                     140                408
  PERITONEUM OVARY            0                  2
D61V4, continuous
                    vv
clus                 I+II III IV
  11P LOSS CNV          0  43  8
  11P LOSS WILD-TYPE    4  90 26
D61V5, multiclass
      clus
vv     11P LOSS CNV 11P LOSS WILD-TYPE
  I+II            0                  4
  III            43                 90
  IV              8                 26
D61V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS CNV          1  143
  11P LOSS WILD-TYPE    2  416
     clus
vv    11P LOSS CNV 11P LOSS WILD-TYPE
  NO             1                  2
  YES          143                416
                    vv
clus                 R0 R1 R2
  11P LOSS CNV        2  4  0
  11P LOSS WILD-TYPE 12 22  2
D61V7, multiclass
    clus
vv   11P LOSS CNV 11P LOSS WILD-TYPE
  R0            2                 12
  R1            4                 22
  R2            0                  2

Clustering(62) Variable = 11q loss
D62V1, survival
                    sevent
clus2                  0   1
  11Q LOSS CNV        46  59
  11Q LOSS WILD-TYPE 217 225
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
               105                442 
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
                59                225 
$`11Q LOSS CNV`
TCGA-04-1331 TCGA-04-1338 TCGA-04-1356 TCGA-04-1367 TCGA-04-1517 TCGA-04-1536 
       40.24        46.62        49.28        71.47        19.99        29.06 
TCGA-09-0366 TCGA-09-0369 TCGA-09-1666 TCGA-09-2051 TCGA-09-2053 TCGA-10-0926 
       57.73        35.54        57.57        63.09        39.75        25.91 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0937 TCGA-10-0938 TCGA-13-0723 TCGA-13-0730 
       18.48        33.24        15.12        19.86        39.58        17.79 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0804 TCGA-13-0899 TCGA-13-0900 TCGA-13-0904 
       11.18        11.38        35.28        56.15        57.07        48.33 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0913 TCGA-13-0920 TCGA-13-0921 TCGA-13-1404 
       44.94        44.84        29.98        13.81         4.64         6.61 
TCGA-13-1409 TCGA-13-1477 TCGA-13-1482 TCGA-13-1483 TCGA-13-1487 TCGA-13-1489 
        6.84        54.61        61.71        29.39        22.39        82.88 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1505 TCGA-13-1512 TCGA-13-2060 TCGA-13-2065 
       38.17        49.22         4.21         3.09         8.58         8.75 
TCGA-20-0991 TCGA-20-1683 TCGA-23-1113 TCGA-23-1114 TCGA-23-1122 TCGA-23-2077 
       26.20        25.38        31.20        68.68        39.09       115.89 
TCGA-24-0968 TCGA-24-0970 TCGA-24-0982 TCGA-24-1105 TCGA-24-1463 TCGA-24-1544 
       19.63        11.64        22.32        47.41        72.92        26.96 
TCGA-24-1562 TCGA-24-1567 TCGA-24-1842 TCGA-24-1920 TCGA-24-2019 TCGA-24-2026 
       45.50        17.23         8.32         9.80         4.87        34.82 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2280 TCGA-24-2295 TCGA-24-2298 TCGA-25-1313 
       57.07        36.16        70.45        33.11        53.26        26.93 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1329 TCGA-25-1870 TCGA-25-1871 TCGA-25-2392 
       65.00        36.95         2.96        14.93        24.99         1.02 
TCGA-25-2393 TCGA-29-1688 TCGA-29-1696 TCGA-29-1697 TCGA-29-1703 TCGA-29-1711 
       38.04        78.87        33.70        31.17        59.67        34.62 
TCGA-29-1769 TCGA-29-1777 TCGA-29-2414 TCGA-29-2428 TCGA-29-2434 TCGA-30-1853 
       22.98        12.30        86.17        45.11        11.47        36.26 
TCGA-30-1861 TCGA-30-1866 TCGA-31-1953 TCGA-36-1571 TCGA-36-1581 TCGA-36-2529 
       34.78        36.62         6.71        22.85        24.69        35.05 
TCGA-36-2538 TCGA-57-1582 TCGA-59-2348 TCGA-61-1724 TCGA-61-1725 TCGA-61-1733 
       25.08        24.03       180.16        20.94        31.40        31.76 
TCGA-61-1743 TCGA-61-1910 TCGA-61-1911 TCGA-61-1917 TCGA-61-1919 TCGA-61-2012 
       43.69        37.02        42.48        43.43        38.17        30.64 
TCGA-61-2018 TCGA-61-2102 TCGA-61-2111 
       45.40         6.48       125.72 

$`11Q LOSS WILD-TYPE`
TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 TCGA-04-1343 
       41.00         1.81        49.15         2.01        18.51        11.87 
TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 
       65.49        63.06        48.76        21.57        63.98        65.46 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1371 TCGA-04-1514 
       32.52        44.32        33.67        76.54        82.36        56.55 
TCGA-04-1516 TCGA-04-1525 TCGA-04-1530 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 
       41.59        38.37       119.08        84.20        55.40        48.89 
TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 
       27.88        28.64        64.64        36.23        31.86        47.70 
TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0367 TCGA-09-1659 TCGA-09-1661 
       45.34        29.16         9.47        17.95         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       89.33        74.89        41.59        61.87        55.36        30.48 
TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 
       17.98         5.85         3.02         8.55        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2054 
        6.12        35.15         4.50       112.37        71.11        20.91 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0927 TCGA-10-0931 TCGA-10-0933 
       26.93        12.46        54.31        81.47        32.28        11.70 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 
        3.88        35.41        35.80         6.21        24.59        44.55 
TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0751 TCGA-13-0755 
        2.73        12.39        31.07        15.19        55.17         2.47 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.54        34.06        32.25        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 
       38.93        36.72        28.70        30.35        19.56         8.71 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0805 
        7.79         8.12         8.28         8.19        43.82        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       13.61        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 
       70.39        61.81        67.99        69.01        43.36        57.47 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0905 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       19.36        47.38        47.84        37.08        27.68        34.06 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1405 
       21.14        14.89         6.41         6.08        10.88         7.36 
TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1481 
        6.05         5.92         4.70         4.21         5.33        87.06 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 TCGA-13-1496 
       98.04        20.68        70.82        52.44        73.55         4.24 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
       54.31        37.61        38.37        13.97        32.84        16.57 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2057 
        4.41         4.77         4.14         2.56         3.88        14.24 
TCGA-13-2059 TCGA-13-2061 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0996 
       12.23        10.78         6.28        23.05        25.94        72.20 
TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
       27.48        19.07        16.67         2.93         2.66        47.54 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       42.51        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
        3.22         4.57        33.30        86.01       129.96         4.27 
TCGA-23-1121 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2078 
        6.38        33.47        58.13         0.53        24.95        87.48 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
       91.66        77.00        49.84         2.76         4.70         4.50 
TCGA-24-0966 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-1103 TCGA-24-1104 
        7.63        21.80        41.56         7.66        54.08        63.55 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 
        6.31         6.38         7.82         7.99         7.86         0.76 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        6.25         6.02         5.95         5.36         4.80        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 
       28.34        19.17        18.67        43.53         8.55        12.46 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 
       45.14       105.99         9.11         3.42         1.18        22.19 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       57.37        64.27        16.21        56.58        41.06        51.91 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 
       41.39        58.09        88.50        70.62        39.88        19.53 
TCGA-24-1560 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 TCGA-24-1604 
       44.09        47.70        25.87        10.26        90.15        88.34 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 
       48.33        38.24         3.48         3.72         3.81         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
       11.28         5.75         5.49        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 
       11.05        81.11       151.99        44.84        58.16       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
       14.43        53.95        18.48        28.18        64.01        44.48 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2281 TCGA-24-2288 
        0.79         0.36        47.54        31.63        44.58         0.82 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 TCGA-25-1312 TCGA-25-1314 
       67.36        36.23        16.64        55.86         1.02        31.99 
TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1321 TCGA-25-1322 
       51.06        37.02         1.02        34.98        33.96         2.99 
TCGA-25-1323 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
       12.00        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 
        7.86         0.30        56.94        60.59        35.54        51.22 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2396 TCGA-25-2397 
       18.05        85.05        13.02        49.05         3.02        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
       45.01        19.99        42.02         2.96        29.00        30.97 
TCGA-25-2409 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       26.96        44.71        47.18       101.75        38.53         0.79 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1705 TCGA-29-1707 
       68.28         0.53        16.90        18.64        18.25        41.95 
TCGA-29-1710 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 
       29.23        17.00        85.68        66.77        62.93        39.09 
TCGA-29-1768 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 
       31.23        24.36        22.52        17.29        12.36        11.84 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2425 
       14.93         8.35         7.20         5.36        34.62        65.00 
TCGA-29-2427 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2436 TCGA-30-1714 
       62.47         4.87        42.25        11.84         9.76        38.07 
TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 
       51.91         2.47        15.68         0.26        48.07        44.91 
TCGA-30-1862 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
        6.08         1.18        57.57        24.26        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1955 TCGA-31-1956 
       45.57        30.18        18.77        22.45        42.51        44.09 
TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1574 TCGA-36-1575 
        2.17        28.73        29.06        21.53        22.55         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-2530 TCGA-36-2532 
       30.05        25.74        27.85        24.23        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       29.79        25.91        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 
       18.31        20.52        14.17         6.05        16.14        11.47 
TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
       14.30         9.07         9.44         7.56         7.46         7.63 
TCGA-42-2593 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 
        1.48        11.38        21.14         1.74        22.32        28.96 
TCGA-57-1993 TCGA-57-1994 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 
       25.05        25.02        80.12        22.32       116.12         9.40 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 
       34.39         2.14         5.39        44.78        11.11         8.05 
TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       18.54        27.88         4.34        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 
       35.80         2.43        33.67         1.41         8.42         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1913 
       11.41        13.02         9.07        34.13        31.30        48.92 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1918 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       56.58        67.73        15.75         1.97         5.52        14.50 
TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2016 TCGA-61-2017 
       17.98         3.98        30.61        39.85         1.18        45.96 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
        4.80         4.77        51.72        71.74        61.64        58.39 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       60.62        65.49        55.50        76.83        20.68        44.52 
TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       22.22         6.35        31.07         8.58 

      11Q LOSS CNV 11Q LOSS WILD-TYPE 
              1.02               0.26 
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
            180.16             151.99 
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
             33.70              25.89 
[1] "1.0 - 180.2 (33.7)" "0.3 - 152.0 (25.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV"       "11Q LOSS CNV" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
      "11Q LOSS CNV"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
      "11Q LOSS CNV"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
      "11Q LOSS CNV"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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      "11Q LOSS CNV"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
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      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-2614 
"11Q LOSS WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
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      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
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"11Q LOSS WILD-TYPE"       "11Q LOSS CNV"       "11Q LOSS CNV" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
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      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
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      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
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      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
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      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
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      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
      "11Q LOSS CNV"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
      "11Q LOSS CNV"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-2614 
"11Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D62V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  11Q LOSS CNV             0   105                1
  11Q LOSS WILD-TYPE       2   443                1
D62V3, multiclass
                  clus
vv                 11Q LOSS CNV 11Q LOSS WILD-TYPE
  OMENTUM                     0                  2
  OVARY                     105                443
  PERITONEUM OVARY            1                  1
D62V4, continuous
                    vv
clus                 I+II III IV
  11Q LOSS CNV          2  34  6
  11Q LOSS WILD-TYPE    2  99 28
D62V5, multiclass
      clus
vv     11Q LOSS CNV 11Q LOSS WILD-TYPE
  I+II            2                  2
  III            34                 99
  IV              6                 28
D62V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS CNV          1  107
  11Q LOSS WILD-TYPE    2  452
     clus
vv    11Q LOSS CNV 11Q LOSS WILD-TYPE
  NO             1                  2
  YES          107                452
                    vv
clus                 R0 R1 R2
  11Q LOSS CNV        1  4  0
  11Q LOSS WILD-TYPE 13 22  2
D62V7, multiclass
    clus
vv   11Q LOSS CNV 11Q LOSS WILD-TYPE
  R0            1                 13
  R1            4                 22
  R2            0                  2

Clustering(63) Variable = 12p loss
D63V1, survival
                    sevent
clus2                  0   1
  12P LOSS CNV        24  25
  12P LOSS WILD-TYPE 239 259
      12P LOSS CNV 12P LOSS WILD-TYPE 
                49                498 
      12P LOSS CNV 12P LOSS WILD-TYPE 
                25                259 
$`12P LOSS CNV`
TCGA-04-1335 TCGA-04-1336 TCGA-04-1364 TCGA-04-1638 TCGA-09-1675 TCGA-09-2044 
        1.81        49.15        33.67        55.40        97.55         6.12 
TCGA-13-0755 TCGA-13-0758 TCGA-13-0766 TCGA-13-0793 TCGA-13-0807 TCGA-13-0891 
        2.47        11.38        21.40        28.70        13.61        69.01 
TCGA-13-0905 TCGA-13-0908 TCGA-13-1403 TCGA-13-1405 TCGA-13-1483 TCGA-13-1489 
       47.84        44.84        10.88         7.36        29.39        82.88 
TCGA-13-1501 TCGA-13-1507 TCGA-13-1512 TCGA-20-0987 TCGA-23-1120 TCGA-23-2072 
       32.84         4.77         3.09        23.05         4.27        24.95 
TCGA-24-0979 TCGA-24-1425 TCGA-24-1435 TCGA-24-1471 TCGA-24-2026 TCGA-24-2036 
       41.56         5.95        43.53         1.18        34.82        64.01 
TCGA-24-2297 TCGA-25-1320 TCGA-25-1632 TCGA-25-2397 TCGA-25-2404 TCGA-29-1688 
       55.86        36.95        56.94        12.00        29.00        78.87 
TCGA-29-1703 TCGA-29-1711 TCGA-29-1776 TCGA-30-1853 TCGA-30-1857 TCGA-30-1861 
       59.67        34.62        11.84        36.26         0.26        34.78 
TCGA-36-2538 TCGA-57-1585 TCGA-61-1727 TCGA-61-1910 TCGA-61-1913 TCGA-61-2008 
       25.08         1.74        18.54        37.02        48.92        30.61 
TCGA-61-2102 
        6.48 

$`12P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 TCGA-04-1343 
       40.24        41.00         2.01        46.62        18.51        11.87 
TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 
       65.49        63.06        48.76        21.57        63.98        65.46 
TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 
       49.28        32.52        44.32        76.54        71.47        82.36 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 
       56.55        41.59        19.99        38.37       119.08        29.06 
TCGA-04-1542 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 
       84.20        48.89        27.88        28.64        64.64        36.23 
TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 
       31.86        47.70        45.34        29.16         9.47        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
       17.95        35.54         9.96        38.43        89.33        74.89 
TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 
       41.59        57.57        61.87        55.36        30.48        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-2043 TCGA-09-2045 TCGA-09-2048 
        5.85         3.02         8.55         6.15        35.15         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 
      112.37        71.11        63.09        39.75        20.91        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
       12.46        54.31        25.91        81.47        18.48        33.24 
TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 
       32.28        11.70         3.88        35.41        35.80        15.12 
TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 
       19.86         6.21        24.59        44.55        39.58         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0757 
       12.39        31.07        15.19        17.79        55.17        11.18 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0768 TCGA-13-0791 
       11.54        34.06        32.25        31.04         8.42        38.93 
TCGA-13-0792 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       36.72        30.35        19.56         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0883 
        8.28         8.19        43.82        35.28        35.28        68.91 
TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 
      107.18        91.40        74.27        66.64        70.39        61.81 
TCGA-13-0890 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       67.99        43.36        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0906 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       47.38        48.33        44.94        37.08        27.68        34.06 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 
       29.98        21.14        14.89        13.81         4.64         6.41 
TCGA-13-0924 TCGA-13-1404 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
        6.08         6.61         6.05         5.92         6.84         4.70 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1484 
        4.21         5.33        54.61        87.06        61.71        98.04 
TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 
       20.68        22.39        70.82        52.44        73.55        38.17 
TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       49.22         4.24        54.31        37.61        38.37        13.97 
TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
       16.57         4.21         4.41         4.14         2.56         3.88 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
       14.24        12.23         8.58        10.78         8.75         6.28 
TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 
       25.94        26.20        72.20        27.48        25.38        19.07 
TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 
       16.67         2.93         2.66        47.54        42.51        40.54 
TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 
       15.39        26.83        31.73        49.41         8.81        29.10 
TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 
       18.87         2.24        51.35        54.51         3.22        31.20 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1121 
       68.68         4.57        33.30        86.01       129.96         6.38 
TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2078 
       39.09        33.47        58.13         0.53       115.89        87.48 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
       91.66        77.00        49.84         2.76         4.70         4.50 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0980 TCGA-24-0982 
        7.63        19.63        11.64        21.80         7.66        22.32 
TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 
       54.08        63.55        47.41         6.31         6.38         7.82 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1426 
        7.99         7.86         0.76         6.25         6.02         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1436 
        4.80        17.36        28.34        19.17        18.67         8.55 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
       72.92        12.46        45.14       105.99         9.11         3.42 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
       22.19        26.96        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 
       41.06        51.91        41.39        58.09        88.50        70.62 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 
       39.88        19.53        44.09        45.50        47.70        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 
       10.26        17.23        90.15        88.34        48.33        38.24 
TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 
        8.32         3.48         3.72         3.81         4.37        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
        5.75         5.49         9.80        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       11.05        81.11         4.87       151.99        44.84        58.16 
TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2038 
      109.68        14.43        53.95        18.48        28.18        44.48 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       57.07        36.16         0.79         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       70.45        44.58         0.82        67.36        36.23        16.64 
TCGA-24-2295 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       33.11        53.26         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 TCGA-25-1322 
       37.02         1.02        34.98        65.00        33.96         2.99 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 
       12.00         2.96        18.58        18.02        15.78         0.36 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 
       20.58         7.86         0.30        60.59        35.54        51.22 
TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       14.93        24.99        18.05        85.05        13.02        49.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
        1.02        38.04         3.02        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2408 TCGA-25-2409 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 
        2.96        30.97        26.96        44.71        47.18       101.75 
TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 
       38.53         0.79        33.70        31.17        68.28         0.53 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1761 
       16.90        18.64        18.25        41.95        29.23        17.00 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       85.68        66.77        62.93        39.09        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1777 TCGA-29-1778 
       24.36        22.52        17.29        12.36        12.30        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
        8.35         7.20         5.36        34.62        86.17        65.00 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 
       62.47        45.11         4.87        42.25        11.84        11.47 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1859 
        9.76        38.07        51.91         2.47        15.68        48.07 
TCGA-30-1860 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       44.91         6.08        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 
        6.71        42.51        44.09         2.17        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 
       21.53        22.85        22.55         8.55        30.05        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
       27.85        24.23        24.69        35.05        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       29.79        25.91        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 
       18.31        20.52        14.17         6.05        16.14        11.47 
TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
       14.30         9.07         9.44         7.56         7.46         7.63 
TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1586 TCGA-57-1992 
        1.48        24.03        11.38        21.14        22.32        28.96 
TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 
       25.05        25.02       180.16        80.12        22.32       116.12 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 
        9.40        34.39         2.14         5.39        44.78        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 
        8.05        20.94        31.40        27.88         4.34        31.76 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       28.47        48.79        44.84        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
       43.69         1.41         8.42         5.79        11.41        13.02 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1911 TCGA-61-1914 TCGA-61-1915 
        9.07        34.13        31.30        42.48        56.58        67.73 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       43.43        15.75        38.17         1.97         5.52        14.50 
TCGA-61-2002 TCGA-61-2003 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 
       17.98         3.98        39.85        30.64         1.18        45.96 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.40         4.80         4.77        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2104 TCGA-61-2109 
       58.39        60.62        65.49        55.50        76.83        20.68 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       44.52       125.72        22.22         6.35        31.07         8.58 

      12P LOSS CNV 12P LOSS WILD-TYPE 
              0.26               0.30 
      12P LOSS CNV 12P LOSS WILD-TYPE 
             97.55             180.16 
      12P LOSS CNV 12P LOSS WILD-TYPE 
            29.390             27.865 
[1] "0.3 - 97.5 (29.4)"  "0.3 - 180.2 (27.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
      "12P LOSS CNV" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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      "12P LOSS CNV" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" 
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        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
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"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
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"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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      "12P LOSS CNV" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
      "12P LOSS CNV" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2614 
"12P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D63V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  12P LOSS CNV             0    49                0
  12P LOSS WILD-TYPE       2   499                2
D63V3, multiclass
                  clus
vv                 12P LOSS CNV 12P LOSS WILD-TYPE
  OMENTUM                     0                  2
  OVARY                      49                499
  PERITONEUM OVARY            0                  2
D63V4, continuous
                    vv
clus                 I+II III  IV
  12P LOSS CNV          1  12   3
  12P LOSS WILD-TYPE    3 121  31
D63V5, multiclass
      clus
vv     12P LOSS CNV 12P LOSS WILD-TYPE
  I+II            1                  3
  III            12                121
  IV              3                 31
D63V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS CNV          0   50
  12P LOSS WILD-TYPE    3  509
     clus
vv    12P LOSS CNV 12P LOSS WILD-TYPE
  NO             0                  3
  YES           50                509
                    vv
clus                 R0 R1 R2
  12P LOSS CNV        0  2  0
  12P LOSS WILD-TYPE 14 24  2
D63V7, multiclass
[1] "Remove cluster labels:" "12P LOSS CNV"          
clus
      12P LOSS CNV 12P LOSS WILD-TYPE 
                 2                 40 
        TCGA-04-1516         TCGA-04-1644         TCGA-13-0911 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2033         TCGA-29-2414         TCGA-29-2425 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-36-2529         TCGA-36-2530 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2532         TCGA-36-2534         TCGA-36-2537 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-42-2593         TCGA-57-1993         TCGA-59-2363 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-2612         TCGA-61-2613 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2614 
"12P LOSS WILD-TYPE" 

Clustering(64) Variable = 12q loss
D64V1, survival
                    sevent
clus2                  0   1
  12Q LOSS CNV        36  35
  12Q LOSS WILD-TYPE 227 249
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                71                476 
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                35                249 
$`12Q LOSS CNV`
TCGA-04-1335 TCGA-04-1356 TCGA-04-1542 TCGA-04-1638 TCGA-09-1675 TCGA-09-2044 
        1.81        49.28        84.20        55.40        97.55         6.12 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0758 TCGA-13-0760 TCGA-13-0762 TCGA-13-0766 
       55.17         2.47        11.38        11.54        32.25        21.40 
TCGA-13-0793 TCGA-13-0807 TCGA-13-0885 TCGA-13-0891 TCGA-13-0904 TCGA-13-0905 
       28.70        13.61        91.40        69.01        48.33        47.84 
TCGA-13-0908 TCGA-13-0923 TCGA-13-1405 TCGA-13-1411 TCGA-13-1483 TCGA-13-1489 
       44.84         6.41         7.36         4.21        29.39        82.88 
TCGA-13-1501 TCGA-13-1507 TCGA-13-1512 TCGA-13-2059 TCGA-20-0987 TCGA-23-1120 
       32.84         4.77         3.09        12.23        23.05         4.27 
TCGA-23-2072 TCGA-23-2077 TCGA-24-0980 TCGA-24-0982 TCGA-24-1104 TCGA-24-1425 
       24.95       115.89         7.66        22.32        63.55         5.95 
TCGA-24-1431 TCGA-24-1471 TCGA-24-1604 TCGA-24-1614 TCGA-24-1920 TCGA-24-1927 
       19.17         1.18        88.34        48.33         9.80        16.41 
TCGA-24-2023 TCGA-24-2026 TCGA-24-2036 TCGA-24-2254 TCGA-24-2297 TCGA-25-1314 
       44.84        34.82        64.01        57.07        55.86        31.99 
TCGA-25-1320 TCGA-25-1632 TCGA-25-2397 TCGA-25-2409 TCGA-29-1688 TCGA-29-1703 
       36.95        56.94        12.00        26.96        78.87        59.67 
TCGA-29-1711 TCGA-29-1776 TCGA-29-2427 TCGA-30-1853 TCGA-30-1857 TCGA-30-1861 
       34.62        11.84        62.47        36.26         0.26        34.78 
TCGA-31-1956 TCGA-36-2538 TCGA-59-2363 TCGA-61-1727 TCGA-61-1734 TCGA-61-1895 
       44.09        25.08         5.39        18.54        28.47         1.41 
TCGA-61-1903 TCGA-61-1913 TCGA-61-1919 TCGA-61-2008 TCGA-61-2104 
       13.02        48.92        38.17        30.61        76.83 

$`12Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00        49.15         2.01        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       11.87        65.49        63.06        48.76        21.57        63.98 
TCGA-04-1351 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       65.46        32.52        44.32        33.67        76.54        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       82.36        56.55        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 
       29.06        48.89        27.88        28.64        64.64        36.23 
TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 
       31.86        47.70        45.34        29.16         9.47        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
       17.95        35.54         9.96        38.43        89.33        74.89 
TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 
       41.59        57.57        61.87        55.36        30.48        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-2043 TCGA-09-2045 TCGA-09-2048 
        5.85         3.02         8.55         6.15        35.15         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 
      112.37        71.11        63.09        39.75        20.91        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
       12.46        54.31        25.91        81.47        18.48        33.24 
TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 
       32.28        11.70         3.88        35.41        35.80        15.12 
TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 
       19.86         6.21        24.59        44.55        39.58         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0757 TCGA-13-0761 
       12.39        31.07        15.19        17.79        11.18        34.06 
TCGA-13-0764 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0794 TCGA-13-0795 
       31.04         8.42        38.93        36.72        30.35        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 
        8.71         7.79         8.12         8.28         8.19        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0883 TCGA-13-0884 TCGA-13-0886 TCGA-13-0887 
       35.28        35.28        68.91       107.18        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 
       70.39        61.81        67.99        43.36        57.47        56.15 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0906 TCGA-13-0910 TCGA-13-0911 
       57.07        19.36        47.38        44.94        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       34.06        29.98        21.14        14.89        13.81         4.64 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 
        6.08        10.88         6.61         6.05         5.92         6.84 
TCGA-13-1410 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1484 
        4.70         5.33        54.61        87.06        61.71        98.04 
TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 
       20.68        22.39        70.82        52.44        73.55        38.17 
TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       49.22         4.24        54.31        37.61        38.37        13.97 
TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
       16.57         4.21         4.41         4.14         2.56         3.88 
TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0990 
       14.24         8.58        10.78         8.75         6.28        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 
       26.20        72.20        27.48        25.38        19.07        16.67 
TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 
        2.93         2.66        47.54        42.51        40.54        15.39 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       26.83        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 
        2.24        51.35        54.51         3.22        31.20        68.68 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1121 TCGA-23-1122 
        4.57        33.30        86.01       129.96         6.38        39.09 
TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
       33.47        58.13         0.53        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
       49.84         2.76         4.70         4.50         7.63        19.63 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-1103 TCGA-24-1105 TCGA-24-1413 
       11.64        21.80        41.56        54.08        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 
        6.38         7.82         7.99         7.86         0.76         6.25 
TCGA-24-1424 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1434 
        6.02         5.36         4.80        17.36        28.34        18.67 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 
       43.53         8.55        72.92        12.46        45.14       105.99 
TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
        9.11         3.42        22.19        26.96        57.37        64.27 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 
       16.21        56.58        41.06        51.91        41.39        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       88.50        70.62        39.88        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1616 
       47.70        25.87        10.26        17.23        90.15        38.24 
TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 
        8.32         3.48         3.72         3.81         4.37        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1923 TCGA-24-1924 TCGA-24-1928 TCGA-24-1930 
        5.75         5.49        22.65        30.21        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
        4.87       151.99        58.16       109.68        14.43        53.95 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2038 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 
       18.48        28.18        44.48        36.16         0.79         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
       47.54        31.63        70.45        44.58         0.82        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 
       36.23        16.64        33.11        53.26         1.02        26.93 
TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 
       51.06        37.02         1.02        34.98        65.00        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
        2.99        12.00         2.96        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 
        0.36        20.58         7.86         0.30        60.59        35.54 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
       51.22        14.93        24.99        18.05        85.05        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2398 TCGA-25-2399 
       49.05         1.02        38.04         3.02        45.01        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-29-1690 TCGA-29-1691 
       42.02         2.96        29.00        30.97        44.71        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 
      101.75        38.53         0.79        33.70        31.17        68.28 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
        0.53        16.90        18.64        18.25        41.95        29.23 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 
       17.00        85.68        66.77        62.93        39.09        31.23 
TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1777 
       22.98        24.36        22.52        17.29        12.36        12.30 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 
       14.93         8.35         7.20         5.36        34.62        86.17 
TCGA-29-2425 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 
       65.00        45.11         4.87        42.25        11.84        11.47 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1859 
        9.76        38.07        51.91         2.47        15.68        48.07 
TCGA-30-1860 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       44.91         6.08        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
        6.71        42.51         2.17        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       22.85        22.55         8.55        30.05        25.74        27.85 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       24.23        24.69        35.05        33.01        29.49        29.79 
TCGA-36-2537 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.91        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 
       20.52        14.17         6.05        16.14        11.47        14.30 
TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 
        9.07         9.44         7.56         7.46         7.63         1.48 
TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 
       24.03        11.38        21.14         1.74        22.32        28.96 
TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 
       25.05        25.02       180.16        80.12        22.32       116.12 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 
        9.40        34.39         2.14        44.78        11.11         8.05 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1736 
       20.94        31.40        27.88         4.34        31.76        48.79 
TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1899 
       44.84        35.80         2.43        33.67        43.69         8.42 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
        5.79        11.41         9.07        34.13        31.30        37.02 
TCGA-61-1911 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1995 
       42.48        56.58        67.73        43.43        15.75         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2009 TCGA-61-2012 
        5.52        14.50        17.98         3.98        39.85        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
        1.18        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
       71.74        61.64        58.39        60.62        65.49        55.50 
TCGA-61-2102 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 
        6.48        20.68        44.52       125.72        22.22         6.35 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

      12Q LOSS CNV 12Q LOSS WILD-TYPE 
              0.26               0.30 
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
            115.89             180.16 
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
            30.610             27.765 
[1] "0.3 - 115.9 (30.6)" "0.3 - 180.2 (27.8)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "12Q LOSS CNV"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV"       "12Q LOSS CNV" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV"       "12Q LOSS CNV" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV"       "12Q LOSS CNV" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-2614 
"12Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D64V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  12Q LOSS CNV             0    72                0
  12Q LOSS WILD-TYPE       2   476                2
D64V3, multiclass
                  clus
vv                 12Q LOSS CNV 12Q LOSS WILD-TYPE
  OMENTUM                     0                  2
  OVARY                      72                476
  PERITONEUM OVARY            0                  2
D64V4, continuous
                    vv
clus                 I+II III  IV
  12Q LOSS CNV          1  21   3
  12Q LOSS WILD-TYPE    3 112  31
D64V5, multiclass
      clus
vv     12Q LOSS CNV 12Q LOSS WILD-TYPE
  I+II            1                  3
  III            21                112
  IV              3                 31
D64V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS CNV          0   74
  12Q LOSS WILD-TYPE    3  485
     clus
vv    12Q LOSS CNV 12Q LOSS WILD-TYPE
  NO             0                  3
  YES           74                485
                    vv
clus                 R0 R1 R2
  12Q LOSS CNV        1  3  0
  12Q LOSS WILD-TYPE 13 23  2
D64V7, multiclass
    clus
vv   12Q LOSS CNV 12Q LOSS WILD-TYPE
  R0            1                 13
  R1            3                 23
  R2            0                  2

Clustering(65) Variable = 13q loss
D65V1, survival
                    sevent
clus2                  0   1
  13Q LOSS CNV       122 125
  13Q LOSS WILD-TYPE 141 159
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
               247                300 
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
               125                159 
$`13Q LOSS CNV`
TCGA-04-1335 TCGA-04-1342 TCGA-04-1343 TCGA-04-1347 TCGA-04-1349 TCGA-04-1361 
        1.81        18.51        11.87        63.06        21.57        32.52 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1514 TCGA-04-1516 TCGA-04-1525 TCGA-04-1530 
       76.54        71.47        56.55        41.59        38.37       119.08 
TCGA-04-1638 TCGA-04-1646 TCGA-04-1648 TCGA-04-1651 TCGA-04-1652 TCGA-04-1655 
       55.40        27.88        28.64        36.23        31.86        45.34 
TCGA-09-0366 TCGA-09-1659 TCGA-09-1661 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       57.73         9.96        38.43        57.57        61.87        55.36 
TCGA-09-1670 TCGA-09-1673 TCGA-09-1674 TCGA-09-2044 TCGA-09-2050 TCGA-09-2051 
       17.98         3.02         8.55         6.12        71.11        63.09 
TCGA-09-2055 TCGA-10-0925 TCGA-10-0927 TCGA-10-0930 TCGA-10-0931 TCGA-10-0936 
       26.93        54.31        81.47        33.24        32.28        35.80 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0717 TCGA-13-0720 TCGA-13-0726 TCGA-13-0751 
       15.12        19.86        24.59        44.55        31.07        55.17 
TCGA-13-0755 TCGA-13-0764 TCGA-13-0792 TCGA-13-0793 TCGA-13-0797 TCGA-13-0799 
        2.47        31.04        36.72        28.70         8.71         7.79 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0890 TCGA-13-0891 
       35.28        35.28        13.61        68.91        67.99        69.01 
TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0906 
       57.47        57.07        19.36        47.38        48.33        44.94 
TCGA-13-0910 TCGA-13-0916 TCGA-13-0919 TCGA-13-0924 TCGA-13-1404 TCGA-13-1409 
       37.08        21.14        14.89         6.08         6.61         6.84 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1487 TCGA-13-1489 TCGA-13-1492 TCGA-13-1494 
       61.71        29.39        22.39        82.88        73.55        38.17 
TCGA-13-1495 TCGA-13-1497 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       49.22        54.31        13.97        32.84        16.57         4.21 
TCGA-13-1509 TCGA-13-1511 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0991 
        4.14         3.88        10.78         8.75         6.28        26.20 
TCGA-20-1682 TCGA-20-1684 TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 TCGA-23-1027 
       27.48        19.07        47.54        40.54        15.39        31.73 
TCGA-23-1029 TCGA-23-1031 TCGA-23-1032 TCGA-23-1114 TCGA-23-1118 TCGA-23-1119 
        8.81        18.87         2.24        68.68        86.01       129.96 
TCGA-23-1121 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2081 
        6.38        33.47        58.13         0.53       115.89        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0980 TCGA-24-1103 
       49.84         2.76         4.70         4.50         7.66        54.08 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1417 TCGA-24-1419 TCGA-24-1424 TCGA-24-1425 
       47.41         6.31         7.82         7.86         6.02         5.95 
TCGA-24-1426 TCGA-24-1428 TCGA-24-1435 TCGA-24-1464 TCGA-24-1466 TCGA-24-1469 
        5.36        17.36        43.53        12.46        45.14         9.11 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1548 TCGA-24-1549 TCGA-24-1552 
       22.19        26.96        57.37        16.21        56.58        41.39 
TCGA-24-1555 TCGA-24-1558 TCGA-24-1560 TCGA-24-1563 TCGA-24-1603 TCGA-24-1614 
       88.50        19.53        44.09        47.70        90.15        48.33 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 
       38.24         8.32         3.48         3.72         3.81         4.37 
TCGA-24-1847 TCGA-24-1850 TCGA-24-1927 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 
       11.28         5.49        16.41         4.87       151.99        44.84 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2030 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 
       58.16        34.82        53.95        57.07        36.16         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2289 TCGA-24-2290 TCGA-25-1313 TCGA-25-1315 
        0.36        47.54        67.36        36.23        26.93        51.06 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 TCGA-25-1627 TCGA-25-1631 TCGA-25-1633 
       34.98        65.00        33.96         0.36         0.30        60.59 
TCGA-25-1635 TCGA-25-1878 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 
       51.22        85.05        49.05         1.02        38.04         3.02 
TCGA-25-2397 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2409 
       12.00        19.99        42.02         2.96        29.00        26.96 
TCGA-29-1693 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1703 TCGA-29-1707 
      101.75        31.17        68.28         0.53        59.67        41.95 
TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1771 TCGA-29-1775 
       66.77        62.93        39.09        31.23        22.52        12.36 
TCGA-29-1776 TCGA-29-1778 TCGA-29-1784 TCGA-29-2427 TCGA-29-2431 TCGA-29-2432 
       11.84        14.93         5.36        62.47        42.25        11.84 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 TCGA-30-1891 TCGA-31-1953 TCGA-31-1959 
       44.91        34.78        36.62        30.05         6.71         2.17 
TCGA-36-1569 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1580 TCGA-36-1581 
       29.06        22.85        22.55         8.55        24.23        24.69 
TCGA-36-2529 TCGA-36-2534 TCGA-36-2542 TCGA-36-2543 TCGA-36-2545 TCGA-42-2587 
       35.05        29.79        21.60         2.24        18.31         9.07 
TCGA-57-1584 TCGA-57-1992 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 
       21.14        28.96        22.32       116.12         9.40        34.39 
TCGA-59-2372 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1730 
       44.78         8.05        20.94        31.40        18.54         4.34 
TCGA-61-1733 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1743 TCGA-61-1899 
       31.76        44.84        35.80         2.43        43.69         8.42 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1906 TCGA-61-1907 TCGA-61-1913 TCGA-61-1914 
       11.41        13.02        34.13        31.30        48.92        56.58 
TCGA-61-1915 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-2002 TCGA-61-2012 
       67.73        15.75        38.17         1.97        17.98        30.64 
TCGA-61-2016 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2097 TCGA-61-2111 
        1.18        45.40         4.80         4.77        60.62       125.72 
TCGA-61-2113 
       22.22 

$`13Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1346 
       40.24        41.00        49.15         2.01        46.62        65.49 
TCGA-04-1348 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1362 TCGA-04-1364 
       48.76        63.98        65.46        49.28        44.32        33.67 
TCGA-04-1371 TCGA-04-1517 TCGA-04-1536 TCGA-04-1542 TCGA-04-1644 TCGA-04-1649 
       82.36        19.99        29.06        84.20        48.89        64.64 
TCGA-04-1654 TCGA-09-0364 TCGA-09-0365 TCGA-09-0367 TCGA-09-0369 TCGA-09-1662 
       47.70        29.16         9.47        17.95        35.54        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1669 TCGA-09-1672 TCGA-09-1675 TCGA-09-2043 
       74.89        41.59        30.48         5.85        97.55         6.15 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2053 TCGA-09-2054 TCGA-09-2056 
       35.15         4.50       112.37        39.75        20.91        12.46 
TCGA-10-0926 TCGA-10-0928 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-13-0714 
       25.91        18.48        11.70         3.88        35.41         6.21 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 TCGA-13-0757 
       39.58         2.73        12.39        15.19        17.79        11.18 
TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0766 TCGA-13-0768 
       11.38        11.54        34.06        32.25        21.40         8.42 
TCGA-13-0791 TCGA-13-0794 TCGA-13-0795 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 
       38.93        30.35        19.56         8.12         8.28         8.19 
TCGA-13-0803 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 
       43.82       107.18        91.40        74.27        66.64        70.39 
TCGA-13-0889 TCGA-13-0893 TCGA-13-0899 TCGA-13-0905 TCGA-13-0908 TCGA-13-0911 
       61.81        43.36        56.15        47.84        44.84        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-1403 
       34.06        29.98        13.81         4.64         6.41        10.88 
TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 
        7.36         6.05         5.92         4.70         4.21         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 TCGA-13-1491 
       54.61        87.06        98.04        20.68        70.82        52.44 
TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 TCGA-13-1506 TCGA-13-1507 TCGA-13-1510 
        4.24        37.61        38.37         4.41         4.77         2.56 
TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-20-0987 TCGA-20-0990 
        3.09        14.24        12.23         8.58        23.05        25.94 
TCGA-20-0996 TCGA-20-1683 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1022 
       72.20        25.38        16.67         2.93         2.66        42.51 
TCGA-23-1026 TCGA-23-1028 TCGA-23-1030 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 
       26.83        49.41        29.10        51.35        54.51         3.22 
TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1120 TCGA-23-1122 TCGA-23-2072 
       31.20         4.57        33.30         4.27        39.09        24.95 
TCGA-23-2078 TCGA-23-2079 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
       87.48        91.66         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0982 TCGA-24-1104 TCGA-24-1416 TCGA-24-1418 TCGA-24-1422 
       41.56        22.32        63.55         6.38         7.99         0.76 
TCGA-24-1423 TCGA-24-1427 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1436 
        6.25         4.80        28.34        19.17        18.67         8.55 
TCGA-24-1463 TCGA-24-1467 TCGA-24-1470 TCGA-24-1471 TCGA-24-1546 TCGA-24-1550 
       72.92       105.99         3.42         1.18        64.27        41.06 
TCGA-24-1551 TCGA-24-1553 TCGA-24-1556 TCGA-24-1557 TCGA-24-1562 TCGA-24-1564 
       51.91        58.09        70.62        39.88        45.50        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1604 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 
       10.26        17.23        88.34         5.75         9.80        22.65 
TCGA-24-1924 TCGA-24-1928 TCGA-24-1930 TCGA-24-2027 TCGA-24-2029 TCGA-24-2033 
       30.21        11.05        81.11       109.68        14.43        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
       28.18        64.01        44.48        31.63        70.45        44.58 
TCGA-24-2288 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 
        0.82        16.64        33.11        55.86        53.26         1.02 
TCGA-25-1314 TCGA-25-1316 TCGA-25-1317 TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 
       31.99        37.02         1.02        36.95         2.99        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1628 TCGA-25-1630 
        2.96        18.58        18.02        15.78        20.58         7.86 
TCGA-25-1632 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-2042 
       56.94        35.54        14.93        24.99        18.05        13.02 
TCGA-25-2398 TCGA-25-2408 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1694 
       45.01        30.97        78.87        44.71        47.18        38.53 
TCGA-29-1695 TCGA-29-1696 TCGA-29-1701 TCGA-29-1702 TCGA-29-1705 TCGA-29-1710 
        0.79        33.70        16.90        18.64        18.25        29.23 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1769 TCGA-29-1770 TCGA-29-1774 
       34.62        17.00        85.68        22.98        24.36        17.29 
TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
       12.30         8.35         7.20        34.62        86.17        65.00 
TCGA-29-2428 TCGA-29-2429 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
       45.11         4.87        11.47         9.76        38.07        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1862 
       36.26         2.47        15.68         0.26        48.07         6.08 
TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
        1.18        57.57        24.26        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1570 
       18.77        22.45        42.51        44.09        28.73        21.53 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-2530 TCGA-36-2532 TCGA-36-2537 
       30.05        25.74        27.85        33.01        29.49        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2544 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 
       25.08        23.80        20.98        20.52        14.17         6.05 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       16.14        11.47        14.30         9.44         7.56         7.46 
TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1585 TCGA-57-1586 
        7.63         1.48        24.03        11.38         1.74        22.32 
TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2355 TCGA-59-2363 
       25.05        25.02       180.16        80.12         2.14         5.39 
TCGA-61-1721 TCGA-61-1728 TCGA-61-1734 TCGA-61-1736 TCGA-61-1741 TCGA-61-1895 
       11.11        27.88        28.47        48.79        33.67         1.41 
TCGA-61-1900 TCGA-61-1904 TCGA-61-1910 TCGA-61-1911 TCGA-61-1917 TCGA-61-1998 
        5.79         9.07        37.02        42.48        43.43         5.52 
TCGA-61-2000 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2017 TCGA-61-2092 
       14.50         3.98        30.61        39.85        45.96        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       71.74        61.64        58.39        65.49        55.50         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       76.83        20.68        44.52         6.35        31.07         8.58 

      13Q LOSS CNV 13Q LOSS WILD-TYPE 
              0.30               0.26 
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
            151.99             180.16 
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
            30.640             25.805 
[1] "0.3 - 152.0 (30.6)" "0.3 - 180.2 (25.8)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
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        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
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      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
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      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
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      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
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      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
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      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-61-2614 
"13Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D65V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  13Q LOSS CNV             1   248                2
  13Q LOSS WILD-TYPE       1   300                0
D65V3, multiclass
                  clus
vv                 13Q LOSS CNV 13Q LOSS WILD-TYPE
  OMENTUM                     1                  1
  OVARY                     248                300
  PERITONEUM OVARY            2                  0
D65V4, continuous
                    vv
clus                 I+II III IV
  13Q LOSS CNV          4  52 20
  13Q LOSS WILD-TYPE    0  81 14
D65V5, multiclass
      clus
vv     13Q LOSS CNV 13Q LOSS WILD-TYPE
  I+II            4                  0
  III            52                 81
  IV             20                 14
D65V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS CNV          1  256
  13Q LOSS WILD-TYPE    2  303
     clus
vv    13Q LOSS CNV 13Q LOSS WILD-TYPE
  NO             1                  2
  YES          256                303
                    vv
clus                 R0 R1 R2
  13Q LOSS CNV        4  8  0
  13Q LOSS WILD-TYPE 10 18  2
D65V7, multiclass
    clus
vv   13Q LOSS CNV 13Q LOSS WILD-TYPE
  R0            4                 10
  R1            8                 18
  R2            0                  2

Clustering(66) Variable = 14q loss
D66V1, survival
                    sevent
clus2                  0   1
  14Q LOSS CNV        67  90
  14Q LOSS WILD-TYPE 196 194
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
               157                390 
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
                90                194 
$`14Q LOSS CNV`
TCGA-04-1335 TCGA-04-1343 TCGA-04-1346 TCGA-04-1351 TCGA-04-1356 TCGA-04-1362 
        1.81        11.87        65.49        65.46        49.28        44.32 
TCGA-04-1364 TCGA-04-1365 TCGA-04-1525 TCGA-04-1542 TCGA-04-1638 TCGA-04-1648 
       33.67        76.54        38.37        84.20        55.40        28.64 
TCGA-04-1649 TCGA-04-1655 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1670 
       64.64        45.34        35.54         9.96        38.43        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-2048 TCGA-09-2051 TCGA-09-2053 TCGA-09-2056 
        5.85         3.02         4.50        63.09        39.75        12.46 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0938 TCGA-13-0717 TCGA-13-0723 TCGA-13-0726 
       54.31        25.91        19.86        24.59        39.58        31.07 
TCGA-13-0730 TCGA-13-0751 TCGA-13-0757 TCGA-13-0758 TCGA-13-0761 TCGA-13-0766 
       17.79        55.17        11.18        11.38        34.06        21.40 
TCGA-13-0792 TCGA-13-0795 TCGA-13-0803 TCGA-13-0884 TCGA-13-0885 TCGA-13-0891 
       36.72        19.56        43.82       107.18        91.40        69.01 
TCGA-13-0906 TCGA-13-0913 TCGA-13-0919 TCGA-13-0921 TCGA-13-1405 TCGA-13-1481 
       44.94        29.98        14.89         4.64         7.36        87.06 
TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 TCGA-13-1496 TCGA-13-1497 TCGA-13-1504 
       22.39        82.88        52.44         4.24        54.31        16.57 
TCGA-13-1507 TCGA-13-1510 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-1683 
        4.77         2.56        10.78         8.75         6.28        25.38 
TCGA-20-1684 TCGA-20-1687 TCGA-23-1024 TCGA-23-1027 TCGA-23-1028 TCGA-23-1030 
       19.07         2.66        15.39        31.73        49.41        29.10 
TCGA-23-1031 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1117 TCGA-23-1118 
       18.87        51.35        54.51         3.22        33.30        86.01 
TCGA-23-1119 TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 TCGA-23-2077 TCGA-23-2081 
      129.96        39.09        33.47        24.95       115.89        77.00 
TCGA-23-2643 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0982 
        4.70        19.63        11.64        21.80        41.56        22.32 
TCGA-24-1105 TCGA-24-1424 TCGA-24-1427 TCGA-24-1434 TCGA-24-1463 TCGA-24-1466 
       47.41         6.02         4.80        18.67        72.92        45.14 
TCGA-24-1469 TCGA-24-1471 TCGA-24-1544 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
        9.11         1.18        26.96        64.27        16.21        56.58 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1565 TCGA-24-1604 TCGA-24-1843 TCGA-24-1924 
       51.91        41.39        10.26        88.34         3.48        30.21 
TCGA-24-2019 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2260 TCGA-24-2267 
        4.87        44.84        58.16        34.82        36.16        47.54 
TCGA-24-2295 TCGA-25-1320 TCGA-25-1631 TCGA-25-1632 TCGA-25-1634 TCGA-25-1635 
       33.11        36.95         0.30        56.94        35.54        51.22 
TCGA-25-1870 TCGA-25-1871 TCGA-25-2393 TCGA-25-2400 TCGA-25-2404 TCGA-29-1695 
       14.93        24.99        38.04        42.02        29.00         0.79 
TCGA-29-1697 TCGA-29-1698 TCGA-29-1707 TCGA-29-1710 TCGA-29-1761 TCGA-29-1763 
       31.17        68.28        41.95        29.23        17.00        66.77 
TCGA-29-1769 TCGA-29-1771 TCGA-29-2427 TCGA-29-2434 TCGA-30-1718 TCGA-30-1855 
       22.98        22.52        62.47        11.47        51.91         2.47 
TCGA-30-1859 TCGA-30-1861 TCGA-30-1887 TCGA-31-1944 TCGA-31-1953 TCGA-36-1571 
       48.07        34.78        24.26        45.57         6.71        22.85 
TCGA-36-1574 TCGA-36-1575 TCGA-36-2534 TCGA-36-2543 TCGA-42-2587 TCGA-42-2589 
       22.55         8.55        29.79         2.24         9.07         7.56 
TCGA-42-2591 TCGA-42-2593 TCGA-57-1992 TCGA-61-1733 TCGA-61-1736 TCGA-61-1741 
        7.63         1.48        28.96        31.76        48.79        33.67 
TCGA-61-1906 TCGA-61-1917 TCGA-61-2000 TCGA-61-2009 TCGA-61-2088 TCGA-61-2102 
       34.13        43.43        14.50        39.85         4.77         6.48 
TCGA-61-2109 
       20.68 

$`14Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00        49.15         2.01        46.62        18.51 
TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1361 TCGA-04-1367 
       63.06        48.76        21.57        63.98        32.52        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1530 TCGA-04-1536 
       82.36        56.55        41.59        19.99       119.08        29.06 
TCGA-04-1644 TCGA-04-1646 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-09-0364 
       48.89        27.88        36.23        31.86        47.70        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 
        9.47        57.73        17.95        89.33        74.89        41.59 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1674 TCGA-09-1675 
       57.57        61.87        55.36        30.48         8.55        97.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2049 TCGA-09-2050 TCGA-09-2054 
        6.15         6.12        35.15       112.37        71.11        20.91 
TCGA-09-2055 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 
       26.93        81.47        18.48        33.24        32.28        11.70 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-13-0714 TCGA-13-0720 
        3.88        35.41        35.80        15.12         6.21        44.55 
TCGA-13-0724 TCGA-13-0725 TCGA-13-0727 TCGA-13-0755 TCGA-13-0760 TCGA-13-0762 
        2.73        12.39        15.19         2.47        11.54        32.25 
TCGA-13-0764 TCGA-13-0768 TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 
       31.04         8.42        38.93        28.70        30.35         8.71 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0804 TCGA-13-0805 
        7.79         8.12         8.28         8.19        35.28        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 
       13.61        68.91        74.27        66.64        70.39        61.81 
TCGA-13-0890 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       67.99        43.36        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       47.38        48.33        47.84        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0916 TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       34.06        21.14        13.81         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 
        6.61         6.05         5.92         6.84         4.70         4.21 
TCGA-13-1412 TCGA-13-1477 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
        5.33        54.61        61.71        29.39        98.04        20.68 
TCGA-13-1488 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1498 TCGA-13-1499 
       70.82        73.55        38.17        49.22        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1505 TCGA-13-1506 TCGA-13-1509 TCGA-13-1511 
       13.97        32.84         4.21         4.41         4.14         3.88 
TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-20-0987 TCGA-20-0990 
        3.09        14.24        12.23         8.58        23.05        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1685 TCGA-20-1686 TCGA-23-1021 
       26.20        72.20        27.48        16.67         2.93        47.54 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 TCGA-23-1029 TCGA-23-1032 TCGA-23-1113 
       42.51        40.54        26.83         8.81         2.24        31.20 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1120 TCGA-23-1121 TCGA-23-1124 TCGA-23-1809 
       68.68         4.57         4.27         6.38        58.13         0.53 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2084 TCGA-23-2641 TCGA-23-2645 TCGA-24-0966 
       87.48        91.66        49.84         2.76         4.50         7.63 
TCGA-24-0980 TCGA-24-1103 TCGA-24-1104 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 
        7.66        54.08        63.55         6.31         6.38         7.82 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 
        7.99         7.86         0.76         6.25         5.95         5.36 
TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 
       17.36        28.34        19.17        43.53         8.55        12.46 
TCGA-24-1467 TCGA-24-1470 TCGA-24-1474 TCGA-24-1545 TCGA-24-1550 TCGA-24-1553 
      105.99         3.42        22.19        57.37        41.06        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       88.50        70.62        39.88        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 TCGA-24-1616 
       47.70        25.87        17.23        90.15        48.33        38.24 
TCGA-24-1842 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 
        8.32         3.72         3.81         4.37        11.28         5.75 
TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        5.49         9.80        22.65        16.41        11.05        81.11 
TCGA-24-2020 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 
      151.99       109.68        14.43        53.95        18.48        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2261 TCGA-24-2262 TCGA-24-2271 
       64.01        44.48        57.07         0.79         0.36        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       70.45        44.58         0.82        67.36        36.23        16.64 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       55.86        53.26         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 TCGA-25-1322 
       37.02         1.02        34.98        65.00        33.96         2.99 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 
       12.00         2.96        18.58        18.02        15.78         0.36 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1633 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
       20.58         7.86        60.59        18.05        85.05        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
       49.05         1.02         3.02        12.00        45.01        19.99 
TCGA-25-2401 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 
        2.96        30.97        26.96        78.87        44.71        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
      101.75        38.53        33.70         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1711 TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 
       59.67        18.25        34.62        85.68        62.93        39.09 
TCGA-29-1768 TCGA-29-1770 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 
       31.23        24.36        17.29        12.36        11.84        12.30 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 
       14.93         8.35         7.20         5.36        34.62        86.17 
TCGA-29-2425 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2436 
       65.00        45.11         4.87        42.25        11.84         9.76 
TCGA-30-1714 TCGA-30-1853 TCGA-30-1856 TCGA-30-1857 TCGA-30-1860 TCGA-30-1862 
       38.07        36.26        15.68         0.26        44.91         6.08 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1891 TCGA-30-1892 TCGA-31-1946 
       36.62         1.18        57.57        30.05        48.79        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 
       18.77        22.45        42.51        44.09         2.17        28.73 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
       29.06        21.53        30.05        25.74        27.85        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2537 TCGA-36-2538 
       24.69        35.05        33.01        29.49        25.91        25.08 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 
       23.80        21.60        20.98        18.31        20.52        14.17 
TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2590 
        6.05        16.14        11.47        14.30         9.44         7.46 
TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1993 
       24.03        11.38        21.14         1.74        22.32        25.05 
TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 
       25.02       180.16        80.12        22.32       116.12         9.40 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 
       34.39         2.14         5.39        44.78        11.11         8.05 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1734 
       20.94        31.40        18.54        27.88         4.34        28.47 
TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 
       44.84        35.80         2.43        43.69         1.41         8.42 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1907 TCGA-61-1910 
        5.79        11.41        13.02         9.07        31.30        37.02 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1918 TCGA-61-1919 
       42.48        48.92        56.58        67.73        15.75        38.17 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2012 
        1.97         5.52        17.98         3.98        30.61        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2092 TCGA-61-2094 
        1.18        45.96        45.40         4.80        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2104 
       61.64        58.39        60.62        65.49        55.50        76.83 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       44.52       125.72        22.22         6.35        31.07         8.58 

      14Q LOSS CNV 14Q LOSS WILD-TYPE 
              0.30               0.26 
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
            129.96             180.16 
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
            29.980             26.945 
[1] "0.3 - 130.0 (30.0)" "0.3 - 180.2 (26.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV"       "14Q LOSS CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV"       "14Q LOSS CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV"       "14Q LOSS CNV" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "14Q LOSS CNV"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV"       "14Q LOSS CNV" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
      "14Q LOSS CNV"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
      "14Q LOSS CNV"       "14Q LOSS CNV"       "14Q LOSS CNV" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
      "14Q LOSS CNV"       "14Q LOSS CNV"       "14Q LOSS CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
      "14Q LOSS CNV"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
      "14Q LOSS CNV"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV"       "14Q LOSS CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
      "14Q LOSS CNV"       "14Q LOSS CNV"       "14Q LOSS CNV" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
      "14Q LOSS CNV"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
      "14Q LOSS CNV"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
      "14Q LOSS CNV"       "14Q LOSS CNV"       "14Q LOSS CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
      "14Q LOSS CNV"       "14Q LOSS CNV"       "14Q LOSS CNV" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
      "14Q LOSS CNV"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV"       "14Q LOSS CNV" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
      "14Q LOSS CNV"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV"       "14Q LOSS CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
      "14Q LOSS CNV"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV"       "14Q LOSS CNV" 
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      "14Q LOSS CNV"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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      "14Q LOSS CNV"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
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        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV"       "14Q LOSS CNV" 
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        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
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        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
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        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
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      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE"       "14Q LOSS CNV"       "14Q LOSS CNV" 
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      "14Q LOSS CNV" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
      "14Q LOSS CNV"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV"       "14Q LOSS CNV" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV"       "14Q LOSS CNV" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
      "14Q LOSS CNV"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-2614 
"14Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D66V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  14Q LOSS CNV             0   159                0
  14Q LOSS WILD-TYPE       2   389                2
D66V3, multiclass
                  clus
vv                 14Q LOSS CNV 14Q LOSS WILD-TYPE
  OMENTUM                     0                  2
  OVARY                     159                389
  PERITONEUM OVARY            0                  2
D66V4, continuous
                    vv
clus                 I+II III IV
  14Q LOSS CNV          2  47  6
  14Q LOSS WILD-TYPE    2  86 28
D66V5, multiclass
      clus
vv     14Q LOSS CNV 14Q LOSS WILD-TYPE
  I+II            2                  2
  III            47                 86
  IV              6                 28
D66V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS CNV          0  162
  14Q LOSS WILD-TYPE    3  397
     clus
vv    14Q LOSS CNV 14Q LOSS WILD-TYPE
  NO             0                  3
  YES          162                397
                    vv
clus                 R0 R1 R2
  14Q LOSS CNV        2  4  1
  14Q LOSS WILD-TYPE 12 22  1
D66V7, multiclass
    clus
vv   14Q LOSS CNV 14Q LOSS WILD-TYPE
  R0            2                 12
  R1            4                 22
  R2            1                  1

Clustering(67) Variable = 15q loss
D67V1, survival
                    sevent
clus2                  0   1
  15Q LOSS CNV        89 120
  15Q LOSS WILD-TYPE 174 164
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
               209                338 
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
               120                164 
$`15Q LOSS CNV`
TCGA-04-1331 TCGA-04-1338 TCGA-04-1342 TCGA-04-1347 TCGA-04-1350 TCGA-04-1367 
       40.24        46.62        18.51        63.06        63.98        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 TCGA-04-1525 TCGA-04-1536 TCGA-04-1646 
       82.36        56.55        19.99        38.37        29.06        27.88 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1655 TCGA-09-0365 TCGA-09-1661 TCGA-09-1667 
       28.64        64.64        45.34         9.47        38.43        61.87 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1674 TCGA-09-2050 TCGA-09-2051 
       55.36        30.48        17.98         8.55        71.11        63.09 
TCGA-09-2054 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0930 TCGA-13-0717 
       20.91        54.31        25.91        81.47        33.24        24.59 
TCGA-13-0723 TCGA-13-0730 TCGA-13-0751 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 
       39.58        17.79        55.17        11.18        11.38        11.54 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0807 TCGA-13-0885 TCGA-13-0887 TCGA-13-0889 
       28.70        30.35        13.61        91.40        66.64        61.81 
TCGA-13-0891 TCGA-13-0910 TCGA-13-0911 TCGA-13-0921 TCGA-13-1405 TCGA-13-1407 
       69.01        37.08        27.68         4.64         7.36         6.05 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1482 TCGA-13-1484 
        5.92         6.84         4.70         4.21        61.71        98.04 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 
       22.39        70.82        82.88        52.44        38.17        49.22 
TCGA-13-1496 TCGA-13-1506 TCGA-13-1507 TCGA-13-1510 TCGA-20-0990 TCGA-20-1682 
        4.24         4.41         4.77         2.56        25.94        27.48 
TCGA-20-1683 TCGA-20-1684 TCGA-23-1022 TCGA-23-1030 TCGA-23-1032 TCGA-23-1109 
       25.38        19.07        42.51        29.10         2.24        51.35 
TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 TCGA-23-1123 TCGA-23-2077 TCGA-23-2084 
       54.51        31.20        68.68        33.47       115.89        49.84 
TCGA-23-2641 TCGA-23-2645 TCGA-24-0968 TCGA-24-0979 TCGA-24-0982 TCGA-24-1104 
        2.76         4.50        19.63        41.56        22.32        63.55 
TCGA-24-1105 TCGA-24-1417 TCGA-24-1418 TCGA-24-1422 TCGA-24-1424 TCGA-24-1426 
       47.41         7.82         7.99         0.76         6.02         5.36 
TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1463 TCGA-24-1466 
       17.36        28.34        19.17        18.67        72.92        45.14 
TCGA-24-1469 TCGA-24-1471 TCGA-24-1544 TCGA-24-1548 TCGA-24-1550 TCGA-24-1552 
        9.11         1.18        26.96        16.21        41.06        41.39 
TCGA-24-1553 TCGA-24-1557 TCGA-24-1603 TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 
       58.09        39.88        90.15        48.33        38.24         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1850 TCGA-24-1924 TCGA-24-2019 TCGA-24-2026 
        3.72         3.81         5.49        30.21         4.87        34.82 
TCGA-24-2030 TCGA-24-2036 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2280 
       53.95        64.01        57.07        36.16         0.79        70.45 
TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 
       16.64        33.11        55.86        53.26         1.02        26.93 
TCGA-25-1314 TCGA-25-1316 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       31.99        37.02        34.98        65.00        36.95        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 
        2.99        12.00         2.96         0.30        56.94        60.59 
TCGA-25-1634 TCGA-25-1871 TCGA-25-2396 TCGA-25-2404 TCGA-29-1693 TCGA-29-1695 
       35.54        24.99         3.02        29.00       101.75         0.79 
TCGA-29-1698 TCGA-29-1702 TCGA-29-1703 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 
       68.28        18.64        59.67        41.95        29.23        34.62 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1769 
       17.00        85.68        66.77        62.93        39.09        22.98 
TCGA-29-1770 TCGA-29-1774 TCGA-29-1777 TCGA-29-1784 TCGA-29-2414 TCGA-29-2428 
       24.36        17.29        12.30         5.36        86.17        45.11 
TCGA-29-2434 TCGA-30-1714 TCGA-30-1718 TCGA-30-1856 TCGA-30-1859 TCGA-30-1860 
       11.47        38.07        51.91        15.68        48.07        44.91 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1950 
       36.62         1.18        24.26        30.05        48.79        18.77 
TCGA-31-1953 TCGA-36-1581 TCGA-36-2529 TCGA-36-2543 TCGA-36-2545 TCGA-36-2548 
        6.71        24.69        35.05         2.24        18.31        14.17 
TCGA-36-2551 TCGA-42-2589 TCGA-42-2593 TCGA-57-1583 TCGA-57-1993 TCGA-59-2348 
       16.14         7.56         1.48        11.38        25.05       180.16 
TCGA-59-2350 TCGA-59-2351 TCGA-61-1724 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 
       22.32       116.12        20.94        18.54        27.88        31.76 
TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1901 TCGA-61-1906 
       44.84        35.80         2.43        33.67        11.41        34.13 
TCGA-61-1917 TCGA-61-1919 TCGA-61-2003 TCGA-61-2008 TCGA-61-2012 TCGA-61-2096 
       43.43        38.17         3.98        30.61        30.64        58.39 
TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2110 
       65.49        55.50         6.48        76.83        44.52 

$`15Q LOSS WILD-TYPE`
TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1343 TCGA-04-1346 
       41.00         1.81        49.15         2.01        11.87        65.49 
TCGA-04-1348 TCGA-04-1349 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 
       48.76        21.57        65.46        49.28        32.52        44.32 
TCGA-04-1364 TCGA-04-1365 TCGA-04-1516 TCGA-04-1530 TCGA-04-1542 TCGA-04-1638 
       33.67        76.54        41.59       119.08        84.20        55.40 
TCGA-04-1644 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-09-0364 TCGA-09-0366 
       48.89        36.23        31.86        47.70        29.16        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 
       17.95        35.54         9.96        89.33        74.89        41.59 
TCGA-09-1666 TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
       57.57         5.85         3.02        97.55         6.15         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2053 TCGA-09-2055 TCGA-09-2056 
       35.15         4.50       112.37        39.75        26.93        12.46 
TCGA-10-0928 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       18.48        32.28        11.70         3.88        35.41        35.80 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 
       15.12        19.86         6.21        44.55         2.73        12.39 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0755 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 
       31.07        15.19         2.47        34.06        32.25        31.04 
TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0795 TCGA-13-0797 
       21.40         8.42        38.93        36.72        19.56         8.71 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 
        7.79         8.12         8.28         8.19        43.82        35.28 
TCGA-13-0805 TCGA-13-0883 TCGA-13-0884 TCGA-13-0886 TCGA-13-0888 TCGA-13-0890 
       35.28        68.91       107.18        74.27        70.39        67.99 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 
       43.36        57.47        56.15        57.07        19.36        47.38 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0912 TCGA-13-0913 
       48.33        47.84        44.94        44.84        34.06        29.98 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       21.14        14.89        13.81         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1483 TCGA-13-1485 
        6.61         5.33        54.61        87.06        29.39        20.68 
TCGA-13-1492 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 
       73.55        54.31        37.61        38.37        13.97        32.84 
TCGA-13-1504 TCGA-13-1505 TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 
       16.57         4.21         4.14         3.88         3.09        14.24 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 
       12.23         8.58        10.78         8.75         6.28        23.05 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
       26.20        72.20        16.67         2.93         2.66        47.54 
TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 
       40.54        15.39        26.83        31.73        49.41         8.81 
TCGA-23-1031 TCGA-23-1111 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
       18.87         3.22         4.57        33.30        86.01       129.96 
TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 
        4.27         6.38        39.09        58.13         0.53        24.95 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2643 TCGA-24-0966 TCGA-24-0970 
       87.48        91.66        77.00         4.70         7.63        11.64 
TCGA-24-0975 TCGA-24-0980 TCGA-24-1103 TCGA-24-1413 TCGA-24-1416 TCGA-24-1419 
       21.80         7.66        54.08         6.31         6.38         7.86 
TCGA-24-1423 TCGA-24-1425 TCGA-24-1427 TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 
        6.25         5.95         4.80        43.53         8.55        12.46 
TCGA-24-1467 TCGA-24-1470 TCGA-24-1474 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 
      105.99         3.42        22.19        57.37        64.27        56.58 
TCGA-24-1551 TCGA-24-1555 TCGA-24-1556 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       51.91        88.50        70.62        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1604 TCGA-24-1842 
       47.70        25.87        10.26        17.23        88.34         8.32 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 
        4.37        11.28         5.75         9.80        22.65        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 
       11.05        81.11       151.99        44.84        58.16       109.68 
TCGA-24-2029 TCGA-24-2033 TCGA-24-2035 TCGA-24-2038 TCGA-24-2262 TCGA-24-2267 
       14.43        18.48        28.18        44.48         0.36        47.54 
TCGA-24-2271 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-25-1315 
       31.63        44.58         0.82        67.36        36.23        51.06 
TCGA-25-1317 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
        1.02        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1635 TCGA-25-1870 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
        7.86        51.22        14.93        18.05        85.05        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
       49.05         1.02        38.04        12.00        45.01        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
       42.02         2.96        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1699 TCGA-29-1701 
       47.18        38.53        33.70        31.17         0.53        16.90 
TCGA-29-1705 TCGA-29-1768 TCGA-29-1771 TCGA-29-1775 TCGA-29-1776 TCGA-29-1778 
       18.25        31.23        22.52        12.36        11.84        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1785 TCGA-29-2425 TCGA-29-2427 TCGA-29-2429 
        8.35         7.20        34.62        65.00        62.47         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2436 TCGA-30-1853 TCGA-30-1855 TCGA-30-1857 
       42.25        11.84         9.76        36.26         2.47         0.26 
TCGA-30-1861 TCGA-30-1862 TCGA-30-1880 TCGA-31-1944 TCGA-31-1946 TCGA-31-1951 
       34.78         6.08        57.57        45.57        30.18        22.45 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       42.51        44.09         2.17        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       22.85        22.55         8.55        30.05        25.74        27.85 
TCGA-36-1580 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       24.23        33.01        29.49        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2544 TCGA-36-2547 TCGA-36-2549 TCGA-36-2552 
       23.80        21.60        20.98        20.52         6.05        11.47 
TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 
       14.30         9.07         9.44         7.46         7.63        24.03 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1994 TCGA-59-2349 
       21.14         1.74        22.32        28.96        25.02        80.12 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 
        9.40        34.39         2.14         5.39        44.78        11.11 
TCGA-61-1722 TCGA-61-1725 TCGA-61-1730 TCGA-61-1734 TCGA-61-1736 TCGA-61-1743 
        8.05        31.40         4.34        28.47        48.79        43.69 
TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1903 TCGA-61-1904 TCGA-61-1907 
        1.41         8.42         5.79        13.02         9.07        31.30 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1918 
       37.02        42.48        48.92        56.58        67.73        15.75 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2009 TCGA-61-2016 
        1.97         5.52        14.50        17.98        39.85         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
       45.96        45.40         4.80         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2097 TCGA-61-2109 TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 
       61.64        60.62        20.68       125.72        22.22         6.35 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

      15Q LOSS CNV 15Q LOSS WILD-TYPE 
              0.30               0.26 
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
            180.16             151.99 
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
            30.480             24.985 
[1] "0.3 - 180.2 (30.5)" "0.3 - 152.0 (25.0)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
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        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
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      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
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        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
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"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
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"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
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        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
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        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
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        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
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        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
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"15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "15Q LOSS CNV"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-2614 
"15Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D67V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  15Q LOSS CNV             1   209                2
  15Q LOSS WILD-TYPE       1   339                0
D67V3, multiclass
                  clus
vv                 15Q LOSS CNV 15Q LOSS WILD-TYPE
  OMENTUM                     1                  1
  OVARY                     209                339
  PERITONEUM OVARY            2                  0
D67V4, continuous
                    vv
clus                 I+II III IV
  15Q LOSS CNV          0  51 17
  15Q LOSS WILD-TYPE    4  82 17
D67V5, multiclass
      clus
vv     15Q LOSS CNV 15Q LOSS WILD-TYPE
  I+II            0                  4
  III            51                 82
  IV             17                 17
D67V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS CNV          2  214
  15Q LOSS WILD-TYPE    1  345
     clus
vv    15Q LOSS CNV 15Q LOSS WILD-TYPE
  NO             2                  1
  YES          214                345
                    vv
clus                 R0 R1 R2
  15Q LOSS CNV        4  8  1
  15Q LOSS WILD-TYPE 10 18  1
D67V7, multiclass
    clus
vv   15Q LOSS CNV 15Q LOSS WILD-TYPE
  R0            4                 10
  R1            8                 18
  R2            1                  1

Clustering(68) Variable = 16p loss
D68V1, survival
                    sevent
clus2                  0   1
  16P LOSS CNV       120 139
  16P LOSS WILD-TYPE 143 145
      16P LOSS CNV 16P LOSS WILD-TYPE 
               259                288 
      16P LOSS CNV 16P LOSS WILD-TYPE 
               139                145 
$`16P LOSS CNV`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1337 TCGA-04-1338 TCGA-04-1343 TCGA-04-1347 
       40.24        41.00         2.01        46.62        11.87        63.06 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1362 TCGA-04-1364 TCGA-04-1516 TCGA-04-1517 
       21.57        63.98        44.32        33.67        41.59        19.99 
TCGA-04-1638 TCGA-04-1644 TCGA-04-1649 TCGA-04-1652 TCGA-09-0367 TCGA-09-1659 
       55.40        48.89        64.64        31.86        17.95         9.96 
TCGA-09-1665 TCGA-09-1667 TCGA-09-1668 TCGA-09-1670 TCGA-09-1673 TCGA-09-1675 
       41.59        61.87        55.36        17.98         3.02        97.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2049 TCGA-09-2053 TCGA-09-2054 TCGA-10-0926 
        6.15         6.12       112.37        39.75        20.91        25.91 
TCGA-10-0928 TCGA-10-0935 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
       18.48        35.41        15.12        19.86         6.21        24.59 
TCGA-13-0720 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0757 TCGA-13-0761 
       44.55        15.19        17.79        55.17        11.18        34.06 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 
       31.04        21.40        38.93        28.70        30.35        19.56 
TCGA-13-0801 TCGA-13-0805 TCGA-13-0807 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 
        8.28        35.28        13.61       107.18        91.40        74.27 
TCGA-13-0887 TCGA-13-0891 TCGA-13-0893 TCGA-13-0899 TCGA-13-0903 TCGA-13-0904 
       66.64        69.01        43.36        56.15        47.38        48.33 
TCGA-13-0906 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0916 TCGA-13-0919 
       44.94        37.08        27.68        34.06        21.14        14.89 
TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
       13.81         6.41         6.08         6.61         7.36         6.05 
TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 
        5.92         4.70         4.21        82.88        52.44        38.17 
TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1500 TCGA-13-1505 TCGA-13-1507 
       49.22         4.24        54.31        13.97         4.21         4.77 
TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2065 TCGA-20-0990 
        4.14         3.88         3.09        14.24         8.75        25.94 
TCGA-20-1683 TCGA-20-1687 TCGA-23-1022 TCGA-23-1024 TCGA-23-1027 TCGA-23-1028 
       25.38         2.66        42.51        15.39        31.73        49.41 
TCGA-23-1030 TCGA-23-1032 TCGA-23-1109 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 
       29.10         2.24        51.35         3.22        31.20        68.68 
TCGA-23-1117 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 
       33.30       129.96         4.27         6.38        39.09        33.47 
TCGA-23-2072 TCGA-23-2078 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-1104 
       24.95        87.48        11.64        21.80        41.56        63.55 
TCGA-24-1105 TCGA-24-1416 TCGA-24-1417 TCGA-24-1419 TCGA-24-1422 TCGA-24-1426 
       47.41         6.38         7.82         7.86         0.76         5.36 
TCGA-24-1431 TCGA-24-1463 TCGA-24-1466 TCGA-24-1471 TCGA-24-1474 TCGA-24-1548 
       19.17        72.92        45.14         1.18        22.19        16.21 
TCGA-24-1552 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1567 
       41.39        19.53        44.09        45.50        47.70        17.23 
TCGA-24-1843 TCGA-24-1846 TCGA-24-1847 TCGA-24-1923 TCGA-24-1924 TCGA-24-1930 
        3.48         4.37        11.28        22.65        30.21        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 
        4.87       151.99        44.84        58.16        34.82       109.68 
TCGA-24-2029 TCGA-24-2035 TCGA-24-2036 TCGA-24-2262 TCGA-24-2267 TCGA-24-2280 
       14.43        28.18        64.01         0.36        47.54        70.45 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
        0.82        67.36        36.23        16.64        33.11        55.86 
TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 
       53.26        26.93        31.99        51.06        37.02        34.98 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1632 
       65.00        36.95         2.99        12.00         2.96        56.94 
TCGA-25-1635 TCGA-25-1870 TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 TCGA-25-2396 
       51.22        14.93        13.02        49.05        38.04         3.02 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2409 
       12.00        45.01        42.02         2.96        29.00        26.96 
TCGA-29-1688 TCGA-29-1693 TCGA-29-1697 TCGA-29-1699 TCGA-29-1701 TCGA-29-1703 
       78.87       101.75        31.17         0.53        16.90        59.67 
TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 TCGA-29-1769 TCGA-29-1771 TCGA-29-1777 
       85.68        62.93        39.09        22.98        22.52        12.30 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1785 TCGA-29-2428 TCGA-29-2431 TCGA-29-2434 
        8.35         7.20        34.62        45.11        42.25        11.47 
TCGA-30-1714 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1860 
       38.07        36.26         2.47        15.68         0.26        44.91 
TCGA-30-1861 TCGA-30-1866 TCGA-30-1867 TCGA-30-1887 TCGA-31-1944 TCGA-31-1950 
       34.78        36.62         1.18        24.26        45.57        18.77 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       22.45         6.71        42.51        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-2532 
       22.85         8.55        30.05        25.74        27.85        29.49 
TCGA-36-2543 TCGA-36-2548 TCGA-36-2551 TCGA-42-2589 TCGA-42-2590 TCGA-42-2593 
        2.24        14.17        16.14         7.56         7.46         1.48 
TCGA-57-1584 TCGA-57-1992 TCGA-57-1993 TCGA-59-2350 TCGA-59-2352 TCGA-59-2355 
       21.14        28.96        25.05        22.32         9.40         2.14 
TCGA-59-2363 TCGA-61-1725 TCGA-61-1730 TCGA-61-1736 TCGA-61-1737 TCGA-61-1741 
        5.39        31.40         4.34        48.79        44.84        33.67 
TCGA-61-1895 TCGA-61-1899 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
        1.41         8.42         9.07        34.13        31.30        37.02 
TCGA-61-1914 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2003 TCGA-61-2008 
       56.58        38.17         1.97         5.52         3.98        30.61 
TCGA-61-2088 TCGA-61-2097 TCGA-61-2098 TCGA-61-2102 TCGA-61-2109 TCGA-61-2113 
        4.77        60.62        65.49         6.48        20.68        22.22 
TCGA-61-2613 
       31.07 

$`16P LOSS WILD-TYPE`
TCGA-04-1335 TCGA-04-1336 TCGA-04-1342 TCGA-04-1346 TCGA-04-1348 TCGA-04-1351 
        1.81        49.15        18.51        65.49        48.76        65.46 
TCGA-04-1356 TCGA-04-1361 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 
       49.28        32.52        76.54        71.47        82.36        56.55 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1646 TCGA-04-1648 
       38.37       119.08        29.06        84.20        27.88        28.64 
TCGA-04-1651 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 
       36.23        47.70        45.34        29.16         9.47        57.73 
TCGA-09-0369 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 TCGA-09-1669 
       35.54        38.43        89.33        74.89        57.57        30.48 
TCGA-09-1672 TCGA-09-1674 TCGA-09-2045 TCGA-09-2048 TCGA-09-2050 TCGA-09-2051 
        5.85         8.55        35.15         4.50        71.11        63.09 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0927 TCGA-10-0930 TCGA-10-0931 
       26.93        12.46        54.31        81.47        33.24        32.28 
TCGA-10-0933 TCGA-10-0934 TCGA-10-0936 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
       11.70         3.88        35.80        39.58         2.73        12.39 
TCGA-13-0726 TCGA-13-0755 TCGA-13-0758 TCGA-13-0760 TCGA-13-0762 TCGA-13-0768 
       31.07         2.47        11.38        11.54        32.25         8.42 
TCGA-13-0792 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0802 TCGA-13-0803 
       36.72         8.71         7.79         8.12         8.19        43.82 
TCGA-13-0804 TCGA-13-0883 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0897 
       35.28        68.91        70.39        61.81        67.99        57.47 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0905 TCGA-13-0908 TCGA-13-0913 TCGA-13-0921 
       57.07        19.36        47.84        44.84        29.98         4.64 
TCGA-13-1403 TCGA-13-1409 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
       10.88         6.84         5.33        54.61        87.06        61.71 
TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1492 
       29.39        98.04        20.68        22.39        70.82        73.55 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1501 TCGA-13-1504 TCGA-13-1506 TCGA-13-1510 
       37.61        38.37        32.84        16.57         4.41         2.56 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2071 TCGA-20-0987 TCGA-20-0991 
       12.23         8.58        10.78         6.28        23.05        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-23-1021 
       72.20        27.48        19.07        16.67         2.93        47.54 
TCGA-23-1023 TCGA-23-1026 TCGA-23-1029 TCGA-23-1031 TCGA-23-1110 TCGA-23-1116 
       40.54        26.83         8.81        18.87        54.51         4.57 
TCGA-23-1118 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2079 TCGA-23-2081 
       86.01        58.13         0.53       115.89        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
       49.84         2.76         4.70         4.50         7.63        19.63 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1413 TCGA-24-1418 TCGA-24-1423 
        7.66        22.32        54.08         6.31         7.99         6.25 
TCGA-24-1424 TCGA-24-1425 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1434 
        6.02         5.95         4.80        17.36        28.34        18.67 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
       43.53         8.55        12.46       105.99         9.11         3.42 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       26.96        57.37        64.27        56.58        41.06        51.91 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1564 TCGA-24-1565 
       58.09        88.50        70.62        39.88        25.87        10.26 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1844 
       90.15        88.34        48.33        38.24         8.32         3.72 
TCGA-24-1845 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1927 TCGA-24-1928 
        3.81         5.75         5.49         9.80        16.41        11.05 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 
       53.95        18.48        44.48        57.07        36.16         0.79 
TCGA-24-2271 TCGA-24-2281 TCGA-25-1312 TCGA-25-1317 TCGA-25-1321 TCGA-25-1623 
       31.63        44.58         1.02         1.02        33.96        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 
       18.02        15.78         0.36        20.58         7.86         0.30 
TCGA-25-1633 TCGA-25-1634 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2392 
       60.59        35.54        24.99        18.05        85.05         1.02 
TCGA-25-2399 TCGA-25-2408 TCGA-29-1690 TCGA-29-1691 TCGA-29-1694 TCGA-29-1695 
       19.99        30.97        44.71        47.18        38.53         0.79 
TCGA-29-1696 TCGA-29-1698 TCGA-29-1702 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       33.70        68.28        18.64        18.25        41.95        29.23 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1763 TCGA-29-1768 TCGA-29-1770 TCGA-29-1774 
       34.62        17.00        66.77        31.23        24.36        17.29 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1778 TCGA-29-1784 TCGA-29-2414 TCGA-29-2425 
       12.36        11.84        14.93         5.36        86.17        65.00 
TCGA-29-2427 TCGA-29-2429 TCGA-29-2432 TCGA-29-2436 TCGA-30-1718 TCGA-30-1859 
       62.47         4.87        11.84         9.76        51.91        48.07 
TCGA-30-1862 TCGA-30-1880 TCGA-30-1891 TCGA-30-1892 TCGA-31-1946 TCGA-31-1956 
        6.08        57.57        30.05        48.79        30.18        44.09 
TCGA-31-1959 TCGA-36-1574 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 
        2.17        22.55        24.23        24.69        35.05        33.01 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2544 
       29.79        25.91        25.08        23.80        21.60        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2549 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 
       18.31        20.52         6.05        11.47        14.30         9.07 
TCGA-42-2588 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1585 TCGA-57-1586 
        9.44         7.63        24.03        11.38         1.74        22.32 
TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2351 TCGA-59-2354 TCGA-59-2372 
       25.02       180.16        80.12       116.12        34.39        44.78 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 
       11.11         8.05        20.94        18.54        27.88        31.76 
TCGA-61-1734 TCGA-61-1738 TCGA-61-1740 TCGA-61-1743 TCGA-61-1900 TCGA-61-1901 
       28.47        35.80         2.43        43.69         5.79        11.41 
TCGA-61-1903 TCGA-61-1911 TCGA-61-1913 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
       13.02        42.48        48.92        67.73        43.43        15.75 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 
       14.50        17.98        39.85        30.64         1.18        45.96 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
       45.40         4.80        51.72        71.74        61.64        58.39 
TCGA-61-2101 TCGA-61-2104 TCGA-61-2110 TCGA-61-2111 TCGA-61-2612 TCGA-61-2614 
       55.50        76.83        44.52       125.72         6.35         8.58 

      16P LOSS CNV 16P LOSS WILD-TYPE 
              0.26               0.30 
      16P LOSS CNV 16P LOSS WILD-TYPE 
            151.99             180.16 
      16P LOSS CNV 16P LOSS WILD-TYPE 
            27.850             28.405 
[1] "0.3 - 152.0 (27.9)" "0.3 - 180.2 (28.4)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
      "16P LOSS CNV"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"16P LOSS WILD-TYPE"       "16P LOSS CNV"       "16P LOSS CNV" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "16P LOSS CNV" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "16P LOSS CNV" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"16P LOSS WILD-TYPE"       "16P LOSS CNV"       "16P LOSS CNV" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"16P LOSS WILD-TYPE"       "16P LOSS CNV"       "16P LOSS CNV" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"16P LOSS WILD-TYPE"       "16P LOSS CNV"       "16P LOSS CNV" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
      "16P LOSS CNV" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
      "16P LOSS CNV"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
      "16P LOSS CNV" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"16P LOSS WILD-TYPE"       "16P LOSS CNV"       "16P LOSS CNV" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
      "16P LOSS CNV" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
      "16P LOSS CNV" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
      "16P LOSS CNV"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
      "16P LOSS CNV" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "16P LOSS CNV"       "16P LOSS CNV"       "16P LOSS CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
      "16P LOSS CNV" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
      "16P LOSS CNV"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
      "16P LOSS CNV" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
      "16P LOSS CNV" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
      "16P LOSS CNV" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"16P LOSS WILD-TYPE"       "16P LOSS CNV"       "16P LOSS CNV" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
      "16P LOSS CNV" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
      "16P LOSS CNV" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "16P LOSS CNV"       "16P LOSS CNV"       "16P LOSS CNV" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
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"16P LOSS WILD-TYPE"       "16P LOSS CNV"       "16P LOSS CNV" 
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"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"       "16P LOSS CNV"       "16P LOSS CNV" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
      "16P LOSS CNV" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
      "16P LOSS CNV"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
      "16P LOSS CNV" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
      "16P LOSS CNV" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
      "16P LOSS CNV"       "16P LOSS CNV"       "16P LOSS CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
      "16P LOSS CNV" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "16P LOSS CNV" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
      "16P LOSS CNV" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"16P LOSS WILD-TYPE"       "16P LOSS CNV"       "16P LOSS CNV" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
      "16P LOSS CNV"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"16P LOSS WILD-TYPE"       "16P LOSS CNV"       "16P LOSS CNV" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
      "16P LOSS CNV"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "16P LOSS CNV"       "16P LOSS CNV"       "16P LOSS CNV" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "16P LOSS CNV" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "16P LOSS CNV" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"16P LOSS WILD-TYPE"       "16P LOSS CNV"       "16P LOSS CNV" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"16P LOSS WILD-TYPE"       "16P LOSS CNV"       "16P LOSS CNV" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
      "16P LOSS CNV" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"16P LOSS WILD-TYPE"       "16P LOSS CNV"       "16P LOSS CNV" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"16P LOSS WILD-TYPE"       "16P LOSS CNV"       "16P LOSS CNV" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"16P LOSS WILD-TYPE"       "16P LOSS CNV"       "16P LOSS CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
      "16P LOSS CNV"       "16P LOSS CNV"       "16P LOSS CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
      "16P LOSS CNV" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
      "16P LOSS CNV" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"16P LOSS WILD-TYPE"       "16P LOSS CNV"       "16P LOSS CNV" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
      "16P LOSS CNV" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "16P LOSS CNV"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"16P LOSS WILD-TYPE"       "16P LOSS CNV"       "16P LOSS CNV" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
      "16P LOSS CNV" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
      "16P LOSS CNV" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-61-2614 
"16P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D68V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  16P LOSS CNV             2   258                1
  16P LOSS WILD-TYPE       0   290                1
D68V3, multiclass
                  clus
vv                 16P LOSS CNV 16P LOSS WILD-TYPE
  OMENTUM                     2                  0
  OVARY                     258                290
  PERITONEUM OVARY            1                  1
D68V4, continuous
                    vv
clus                 I+II III IV
  16P LOSS CNV          1  71 19
  16P LOSS WILD-TYPE    3  62 15
D68V5, multiclass
      clus
vv     16P LOSS CNV 16P LOSS WILD-TYPE
  I+II            1                  3
  III            71                 62
  IV             19                 15
D68V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS CNV          2  266
  16P LOSS WILD-TYPE    1  293
     clus
vv    16P LOSS CNV 16P LOSS WILD-TYPE
  NO             2                  1
  YES          266                293
                    vv
clus                 R0 R1 R2
  16P LOSS CNV        7  9  1
  16P LOSS WILD-TYPE  7 17  1
D68V7, multiclass
    clus
vv   16P LOSS CNV 16P LOSS WILD-TYPE
  R0            7                  7
  R1            9                 17
  R2            1                  1

Clustering(69) Variable = 16q loss
D69V1, survival
                    sevent
clus2                  0   1
  16Q LOSS CNV       163 183
  16Q LOSS WILD-TYPE 100 101
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
               346                201 
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
               183                101 
$`16Q LOSS CNV`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00        49.15         2.01        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 
       11.87        65.49        63.06        21.57        63.98        49.28 
TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1371 TCGA-04-1516 TCGA-04-1517 
       44.32        33.67        76.54        82.36        41.59        19.99 
TCGA-04-1525 TCGA-04-1638 TCGA-04-1644 TCGA-04-1649 TCGA-04-1652 TCGA-04-1654 
       38.37        55.40        48.89        64.64        31.86        47.70 
TCGA-09-0366 TCGA-09-0367 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1665 
       57.73        17.95         9.96        38.43        89.33        41.59 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1674 TCGA-09-1675 
       61.87        55.36        30.48        17.98         8.55        97.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2048 TCGA-09-2049 TCGA-09-2051 TCGA-09-2053 
        6.15         6.12         4.50       112.37        63.09        39.75 
TCGA-09-2054 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0931 
       20.91        54.31        25.91        81.47        18.48        32.28 
TCGA-10-0935 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 
       35.41        15.12        19.86         6.21        24.59        44.55 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 
       31.07        15.19        17.79        55.17         2.47        11.18 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0791 TCGA-13-0793 
       34.06        32.25        31.04        21.40        38.93        28.70 
TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0801 TCGA-13-0802 TCGA-13-0804 
       30.35        19.56         8.71         8.28         8.19        35.28 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 
       35.28        13.61        68.91       107.18        91.40        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0891 TCGA-13-0893 TCGA-13-0899 
       66.64        70.39        61.81        69.01        43.36        56.15 
TCGA-13-0903 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       47.38        44.94        44.84        37.08        27.68        34.06 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       21.14        14.89        13.81         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 
        6.61         7.36         6.05         5.92         4.70         4.21 
TCGA-13-1481 TCGA-13-1483 TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 
       87.06        29.39        22.39        82.88        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       38.17        49.22         4.24        54.31        37.61        38.37 
TCGA-13-1500 TCGA-13-1505 TCGA-13-1507 TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 
       13.97         4.21         4.77         4.14         3.88         3.09 
TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-20-0987 TCGA-20-0990 
       14.24         8.58        10.78         8.75        23.05        25.94 
TCGA-20-0991 TCGA-20-1682 TCGA-20-1683 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       26.20        27.48        25.38        16.67         2.93         2.66 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 
       42.51        40.54        31.73        49.41         8.81        29.10 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1117 
        2.24        51.35         3.22        31.20        68.68        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 
       86.01       129.96         4.27         6.38        39.09        33.47 
TCGA-23-2072 TCGA-23-2078 TCGA-23-2081 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
       24.95        87.48        77.00         2.76         4.70         4.50 
TCGA-24-0966 TCGA-24-0970 TCGA-24-0979 TCGA-24-0982 TCGA-24-1104 TCGA-24-1105 
        7.63        11.64        41.56        22.32        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 
        6.31         6.38         7.82         7.99         7.86         0.76 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 
        5.95         5.36        17.36        28.34        19.17        18.67 
TCGA-24-1435 TCGA-24-1463 TCGA-24-1466 TCGA-24-1471 TCGA-24-1474 TCGA-24-1545 
       43.53        72.92        45.14         1.18        22.19        57.37 
TCGA-24-1548 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1558 TCGA-24-1560 
       16.21        41.06        51.91        41.39        19.53        44.09 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1843 
       45.50        47.70        10.26        17.23        90.15         3.48 
TCGA-24-1844 TCGA-24-1846 TCGA-24-1847 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
        3.72         4.37        11.28        22.65        30.21        16.41 
TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 
       81.11         4.87       151.99        44.84        58.16        34.82 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 TCGA-24-2260 TCGA-24-2261 
       14.43        53.95        28.18        64.01        36.16         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2288 TCGA-24-2289 
        0.36        47.54        31.63        70.45         0.82        67.36 
TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 
       16.64        33.11        55.86        53.26         1.02        26.93 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 
       31.99        51.06        37.02        34.98        65.00        36.95 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1632 TCGA-25-1635 TCGA-25-1870 
        2.99        12.00         2.96        56.94        51.22        14.93 
TCGA-25-1871 TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 
       24.99        13.02        49.05        38.04         3.02        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2409 
       45.01        19.99        42.02         2.96        29.00        26.96 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 
       47.18       101.75        33.70        31.17        68.28         0.53 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1761 TCGA-29-1762 TCGA-29-1764 
       16.90        18.64        59.67        17.00        85.68        62.93 
TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 TCGA-29-1777 TCGA-29-1781 
       39.09        31.23        22.98        22.52        12.30         8.35 
TCGA-29-1783 TCGA-29-1785 TCGA-29-2414 TCGA-29-2428 TCGA-29-2431 TCGA-29-2432 
        7.20        34.62        86.17        45.11        42.25        11.84 
TCGA-29-2434 TCGA-30-1714 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 
       11.47        38.07        36.26         2.47        15.68         0.26 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 TCGA-30-1867 TCGA-30-1887 TCGA-30-1892 
       44.91        34.78        36.62         1.18        24.26        48.79 
TCGA-31-1944 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-36-1568 TCGA-36-1569 
       45.57        18.77        22.45         6.71        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       21.53        22.85         8.55        30.05        25.74        27.85 
TCGA-36-1580 TCGA-36-2529 TCGA-36-2532 TCGA-36-2534 TCGA-36-2542 TCGA-36-2543 
       24.23        35.05        29.49        29.79        21.60         2.24 
TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2589 TCGA-42-2590 TCGA-42-2593 
       14.17        16.14        11.47         7.56         7.46         1.48 
TCGA-57-1582 TCGA-57-1584 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2350 
       24.03        21.14        28.96        25.05        25.02        22.32 
TCGA-59-2352 TCGA-59-2355 TCGA-59-2363 TCGA-61-1725 TCGA-61-1727 TCGA-61-1730 
        9.40         2.14         5.39        31.40        18.54         4.34 
TCGA-61-1733 TCGA-61-1736 TCGA-61-1737 TCGA-61-1741 TCGA-61-1895 TCGA-61-1899 
       31.76        48.79        44.84        33.67         1.41         8.42 
TCGA-61-1900 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1913 
        5.79         9.07        34.13        31.30        37.02        48.92 
TCGA-61-1914 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2003 TCGA-61-2008 
       56.58        38.17         1.97         5.52         3.98        30.61 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2097 TCGA-61-2098 TCGA-61-2102 TCGA-61-2104 
        4.80         4.77        60.62        65.49         6.48        76.83 
TCGA-61-2109 TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 
       20.68        22.22         6.35        31.07 

$`16Q LOSS WILD-TYPE`
TCGA-04-1335 TCGA-04-1348 TCGA-04-1351 TCGA-04-1361 TCGA-04-1367 TCGA-04-1514 
        1.81        48.76        65.46        32.52        71.47        56.55 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1646 TCGA-04-1648 TCGA-04-1651 
      119.08        29.06        84.20        27.88        28.64        36.23 
TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0369 TCGA-09-1664 TCGA-09-1666 
       45.34        29.16         9.47        35.54        74.89        57.57 
TCGA-09-1672 TCGA-09-1673 TCGA-09-2045 TCGA-09-2050 TCGA-09-2055 TCGA-09-2056 
        5.85         3.02        35.15        71.11        26.93        12.46 
TCGA-10-0930 TCGA-10-0933 TCGA-10-0934 TCGA-10-0936 TCGA-13-0723 TCGA-13-0724 
       33.24        11.70         3.88        35.80        39.58         2.73 
TCGA-13-0725 TCGA-13-0758 TCGA-13-0760 TCGA-13-0768 TCGA-13-0792 TCGA-13-0799 
       12.39        11.38        11.54         8.42        36.72         7.79 
TCGA-13-0800 TCGA-13-0803 TCGA-13-0890 TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 
        8.12        43.82        67.99        57.47        57.07        19.36 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0913 TCGA-13-0921 TCGA-13-1409 TCGA-13-1412 
       48.33        47.84        29.98         4.64         6.84         5.33 
TCGA-13-1477 TCGA-13-1482 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 TCGA-13-1501 
       54.61        61.71        98.04        20.68        70.82        32.84 
TCGA-13-1504 TCGA-13-1506 TCGA-13-1510 TCGA-13-2059 TCGA-13-2071 TCGA-20-0996 
       16.57         4.41         2.56        12.23         6.28        72.20 
TCGA-20-1684 TCGA-23-1021 TCGA-23-1024 TCGA-23-1026 TCGA-23-1031 TCGA-23-1110 
       19.07        47.54        15.39        26.83        18.87        54.51 
TCGA-23-1116 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2079 TCGA-23-2084 
        4.57        58.13         0.53       115.89        91.66        49.84 
TCGA-24-0968 TCGA-24-0975 TCGA-24-0980 TCGA-24-1103 TCGA-24-1423 TCGA-24-1424 
       19.63        21.80         7.66        54.08         6.25         6.02 
TCGA-24-1427 TCGA-24-1436 TCGA-24-1464 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
        4.80         8.55        12.46       105.99         9.11         3.42 
TCGA-24-1544 TCGA-24-1546 TCGA-24-1549 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 
       26.96        64.27        56.58        58.09        88.50        70.62 
TCGA-24-1557 TCGA-24-1564 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 
       39.88        25.87        88.34        48.33        38.24         8.32 
TCGA-24-1845 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1928 TCGA-24-2027 
        3.81         5.75         5.49         9.80        11.05       109.68 
TCGA-24-2033 TCGA-24-2038 TCGA-24-2254 TCGA-24-2281 TCGA-24-2290 TCGA-25-1317 
       18.48        44.48        57.07        44.58        36.23         1.02 
TCGA-25-1321 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
       33.96        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 TCGA-25-1877 TCGA-25-1878 
        7.86         0.30        60.59        35.54        18.05        85.05 
TCGA-25-2392 TCGA-25-2408 TCGA-29-1688 TCGA-29-1690 TCGA-29-1694 TCGA-29-1695 
        1.02        30.97        78.87        44.71        38.53         0.79 
TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1763 TCGA-29-1770 
       18.25        41.95        29.23        34.62        66.77        24.36 
TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1778 TCGA-29-1784 TCGA-29-2425 
       17.29        12.36        11.84        14.93         5.36        65.00 
TCGA-29-2427 TCGA-29-2429 TCGA-29-2436 TCGA-30-1718 TCGA-30-1859 TCGA-30-1862 
       62.47         4.87         9.76        51.91        48.07         6.08 
TCGA-30-1880 TCGA-30-1891 TCGA-31-1946 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 
       57.57        30.05        30.18        42.51        44.09         2.17 
TCGA-36-1574 TCGA-36-1581 TCGA-36-2530 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       22.55        24.69        33.01        25.91        25.08        23.80 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2549 TCGA-42-2582 TCGA-42-2587 
       20.98        18.31        20.52         6.05        14.30         9.07 
TCGA-42-2588 TCGA-42-2591 TCGA-57-1583 TCGA-57-1585 TCGA-57-1586 TCGA-59-2348 
        9.44         7.63        11.38         1.74        22.32       180.16 
TCGA-59-2349 TCGA-59-2351 TCGA-59-2354 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 
       80.12       116.12        34.39        44.78        11.11         8.05 
TCGA-61-1724 TCGA-61-1728 TCGA-61-1734 TCGA-61-1738 TCGA-61-1740 TCGA-61-1743 
       20.94        27.88        28.47        35.80         2.43        43.69 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1911 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
       11.41        13.02        42.48        67.73        43.43        15.75 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 
       14.50        17.98        39.85        30.64         1.18        45.96 
TCGA-61-2018 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2101 
       45.40        51.72        71.74        61.64        58.39        55.50 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2614 
       44.52       125.72         8.58 

      16Q LOSS CNV 16Q LOSS WILD-TYPE 
              0.26               0.30 
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
            151.99             180.16 
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
             28.26              27.88 
[1] "0.3 - 152.0 (28.3)" "0.3 - 180.2 (27.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-2614 
"16Q LOSS WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
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      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-2614 
"16Q LOSS WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
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      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
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      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
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"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
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      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
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"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-61-2614 
"16Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D69V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  16Q LOSS CNV             1   345                2
  16Q LOSS WILD-TYPE       1   203                0
D69V3, multiclass
                  clus
vv                 16Q LOSS CNV 16Q LOSS WILD-TYPE
  OMENTUM                     1                  1
  OVARY                     345                203
  PERITONEUM OVARY            2                  0
D69V4, continuous
                    vv
clus                 I+II III IV
  16Q LOSS CNV          2  94 20
  16Q LOSS WILD-TYPE    2  39 14
D69V5, multiclass
      clus
vv     16Q LOSS CNV 16Q LOSS WILD-TYPE
  I+II            2                  2
  III            94                 39
  IV             20                 14
D69V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS CNV          2  354
  16Q LOSS WILD-TYPE    1  205
     clus
vv    16Q LOSS CNV 16Q LOSS WILD-TYPE
  NO             2                  1
  YES          354                205
                    vv
clus                 R0 R1 R2
  16Q LOSS CNV        8 15  1
  16Q LOSS WILD-TYPE  6 11  1
D69V7, multiclass
    clus
vv   16Q LOSS CNV 16Q LOSS WILD-TYPE
  R0            8                  6
  R1           15                 11
  R2            1                  1

Clustering(70) Variable = 17p loss
D70V1, survival
                    sevent
clus2                  0   1
  17P LOSS CNV       192 220
  17P LOSS WILD-TYPE  71  64
      17P LOSS CNV 17P LOSS WILD-TYPE 
               412                135 
      17P LOSS CNV 17P LOSS WILD-TYPE 
               220                 64 
$`17P LOSS CNV`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1343 TCGA-04-1348 
       40.24         1.81        49.15        46.62        11.87        48.76 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       21.57        63.98        65.46        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 TCGA-04-1542 
       76.54        71.47        82.36        56.55        19.99        84.20 
TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 
       55.40        48.89        27.88        28.64        64.64        36.23 
TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 
       31.86        47.70        45.34        29.16         9.47        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 
       17.95        35.54         9.96        89.33        74.89        57.57 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       61.87        55.36        30.48        17.98         5.85         3.02 
TCGA-09-1675 TCGA-09-2044 TCGA-09-2045 TCGA-09-2049 TCGA-09-2050 TCGA-09-2053 
       97.55         6.12        35.15       112.37        71.11        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-10-0926 TCGA-10-0927 TCGA-10-0930 TCGA-10-0933 
       20.91        26.93        25.91        81.47        33.24        11.70 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 
       15.12        19.86         6.21        24.59        44.55        39.58 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0755 TCGA-13-0757 
       12.39        31.07        15.19        17.79         2.47        11.18 
TCGA-13-0758 TCGA-13-0761 TCGA-13-0766 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 
       11.38        34.06        21.40        38.93        36.72        28.70 
TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 TCGA-13-0802 
       30.35        19.56         8.71         7.79         8.28         8.19 
TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 
       43.82        35.28        35.28        13.61        68.91       107.18 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
       91.40        74.27        66.64        61.81        67.99        69.01 
TCGA-13-0893 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 
       43.36        57.07        19.36        47.38        48.33        47.84 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0916 TCGA-13-0919 
       44.84        37.08        27.68        34.06        21.14        14.89 
TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 
        4.64         6.41         6.08        10.88         6.61         7.36 
TCGA-13-1407 TCGA-13-1409 TCGA-13-1481 TCGA-13-1482 TCGA-13-1487 TCGA-13-1488 
        6.05         6.84        87.06        61.71        22.39        70.82 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 
       82.88        52.44        73.55        38.17        49.22         4.24 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       54.31        37.61        13.97        32.84        16.57         4.21 
TCGA-13-1506 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2061 TCGA-13-2065 
        4.41         4.14         2.56         3.88        10.78         8.75 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-1682 TCGA-20-1684 
        6.28        23.05        25.94        26.20        27.48        19.07 
TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 
       16.67         2.93         2.66        47.54        40.54        15.39 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       26.83        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1117 
        2.24        51.35        54.51         3.22        31.20        33.30 
TCGA-23-1118 TCGA-23-1120 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-2072 
       86.01         4.27        39.09        33.47        58.13        24.95 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 
      115.89        87.48        77.00        49.84         2.76         4.70 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 
        4.50         7.63        19.63        11.64        21.80        41.56 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
        7.66        22.32        54.08        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 
        6.38         7.82         7.99         0.76         6.25         6.02 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 
        5.95         5.36         4.80        28.34        19.17        18.67 
TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1470 
       43.53        72.92        12.46        45.14       105.99         3.42 
TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
        1.18        26.96        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1555 TCGA-24-1557 TCGA-24-1558 
       41.06        51.91        41.39        88.50        39.88        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
       44.09        45.50        47.70        17.23        90.15        88.34 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1846 TCGA-24-1847 
       48.33        38.24         8.32         3.48         4.37        11.28 
TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        5.75         9.80        22.65        16.41        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 
        4.87       151.99        44.84        58.16        34.82       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2036 TCGA-24-2261 TCGA-24-2267 
       14.43        53.95        18.48        64.01         0.79        47.54 
TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2290 TCGA-24-2295 
       31.63        70.45        44.58         0.82        36.23        33.11 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       55.86        53.26         1.02        31.99        51.06        37.02 
TCGA-25-1317 TCGA-25-1318 TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 
        1.02        34.98        36.95         2.99        12.00         2.96 
TCGA-25-1625 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 
       18.02         7.86         0.30        56.94        60.59        35.54 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 
       51.22        14.93        24.99        13.02        49.05        38.04 
TCGA-25-2396 TCGA-25-2398 TCGA-25-2399 TCGA-25-2401 TCGA-25-2404 TCGA-25-2409 
        3.02        45.01        19.99         2.96        29.00        26.96 
TCGA-29-1688 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 
       78.87        47.18       101.75        38.53         0.79        33.70 
TCGA-29-1697 TCGA-29-1699 TCGA-29-1701 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
       31.17         0.53        16.90        59.67        18.25        41.95 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1764 TCGA-29-1768 TCGA-29-1769 
       34.62        17.00        85.68        62.93        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       24.36        22.52        12.36        11.84        12.30        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
        8.35         7.20         5.36        34.62        86.17        65.00 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2431 TCGA-29-2432 TCGA-30-1714 TCGA-30-1718 
       62.47        45.11        42.25        11.84        38.07        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 
       36.26         2.47        15.68         0.26        48.07        44.91 
TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       34.78         6.08        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1574 
        6.71        42.51        44.09         2.17        28.73        22.55 
TCGA-36-1575 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
        8.55        35.05        33.01        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       25.08        21.60         2.24        20.98        18.31        20.52 
TCGA-36-2548 TCGA-36-2549 TCGA-42-2582 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
       14.17         6.05        14.30         7.56         7.46         7.63 
TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1993 
        1.48        24.03        11.38        21.14         1.74        25.05 
TCGA-59-2348 TCGA-59-2350 TCGA-59-2351 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
      180.16        22.32       116.12        34.39         2.14         5.39 
TCGA-59-2372 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 
       44.78        20.94        31.40        18.54        27.88        31.76 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1738 TCGA-61-1740 TCGA-61-1743 TCGA-61-1895 
       28.47        48.79        35.80         2.43        43.69         1.41 
TCGA-61-1899 TCGA-61-1901 TCGA-61-1903 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
        8.42        11.41        13.02        34.13        31.30        37.02 
TCGA-61-1913 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       48.92        67.73        43.43        15.75        38.17         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2012 
        5.52        14.50        17.98         3.98        30.61        30.64 
TCGA-61-2016 TCGA-61-2087 TCGA-61-2088 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
        1.18         4.80         4.77        71.74        61.64        58.39 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 
       60.62        65.49        55.50         6.48        76.83        20.68 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2613 TCGA-61-2614 
       44.52       125.72        31.07         8.58 

$`17P LOSS WILD-TYPE`
TCGA-04-1332 TCGA-04-1337 TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1356 
       41.00         2.01        18.51        65.49        63.06        49.28 
TCGA-04-1516 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-09-1661 TCGA-09-1665 
       41.59        38.37       119.08        29.06        38.43        41.59 
TCGA-09-1674 TCGA-09-2043 TCGA-09-2048 TCGA-09-2051 TCGA-09-2056 TCGA-10-0925 
        8.55         6.15         4.50        63.09        12.46        54.31 
TCGA-10-0928 TCGA-10-0931 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-13-0724 
       18.48        32.28         3.88        35.41        35.80         2.73 
TCGA-13-0751 TCGA-13-0760 TCGA-13-0762 TCGA-13-0764 TCGA-13-0768 TCGA-13-0800 
       55.17        11.54        32.25        31.04         8.42         8.12 
TCGA-13-0888 TCGA-13-0897 TCGA-13-0899 TCGA-13-0906 TCGA-13-0913 TCGA-13-0920 
       70.39        57.47        56.15        44.94        29.98        13.81 
TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1483 
        5.92         4.70         4.21         5.33        54.61        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1499 TCGA-13-1507 TCGA-13-1512 TCGA-13-2057 
       98.04        20.68        38.37         4.77         3.09        14.24 
TCGA-13-2059 TCGA-13-2060 TCGA-20-0996 TCGA-20-1683 TCGA-23-1022 TCGA-23-1114 
       12.23         8.58        72.20        25.38        42.51        68.68 
TCGA-23-1116 TCGA-23-1119 TCGA-23-1121 TCGA-23-1809 TCGA-23-2079 TCGA-24-1419 
        4.57       129.96         6.38         0.53        91.66         7.86 
TCGA-24-1428 TCGA-24-1436 TCGA-24-1469 TCGA-24-1474 TCGA-24-1553 TCGA-24-1556 
       17.36         8.55         9.11        22.19        58.09        70.62 
TCGA-24-1564 TCGA-24-1565 TCGA-24-1844 TCGA-24-1845 TCGA-24-1850 TCGA-24-1924 
       25.87        10.26         3.72         3.81         5.49        30.21 
TCGA-24-2035 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2262 TCGA-24-2289 
       28.18        44.48        57.07        36.16         0.36        67.36 
TCGA-24-2293 TCGA-25-1313 TCGA-25-1319 TCGA-25-1321 TCGA-25-1623 TCGA-25-1626 
       16.64        26.93        65.00        33.96        18.58        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1877 TCGA-25-1878 TCGA-25-2392 TCGA-25-2397 
        0.36        20.58        18.05        85.05         1.02        12.00 
TCGA-25-2400 TCGA-25-2408 TCGA-29-1690 TCGA-29-1698 TCGA-29-1702 TCGA-29-1710 
       42.02        30.97        44.71        68.28        18.64        29.23 
TCGA-29-1763 TCGA-29-1766 TCGA-29-1774 TCGA-29-2429 TCGA-29-2434 TCGA-29-2436 
       66.77        39.09        17.29         4.87        11.47         9.76 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       29.06        21.53        22.85        30.05        25.74        27.85 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2540 TCGA-36-2551 TCGA-36-2552 TCGA-42-2587 
       24.23        24.69        23.80        16.14        11.47         9.07 
TCGA-42-2588 TCGA-57-1586 TCGA-57-1992 TCGA-57-1994 TCGA-59-2349 TCGA-59-2352 
        9.44        22.32        28.96        25.02        80.12         9.40 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1730 TCGA-61-1737 TCGA-61-1741 TCGA-61-1900 
       11.11         8.05         4.34        44.84        33.67         5.79 
TCGA-61-1904 TCGA-61-1911 TCGA-61-1914 TCGA-61-2009 TCGA-61-2017 TCGA-61-2018 
        9.07        42.48        56.58        39.85        45.96        45.40 
TCGA-61-2092 TCGA-61-2113 TCGA-61-2612 
       51.72        22.22         6.35 

      17P LOSS CNV 17P LOSS WILD-TYPE 
              0.26               0.36 
      17P LOSS CNV 17P LOSS WILD-TYPE 
            180.16             129.96 
      17P LOSS CNV 17P LOSS WILD-TYPE 
             29.05              25.02 
[1] "0.3 - 180.2 (29.1)" "0.4 - 130.0 (25.0)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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      "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-61-2614 
      "17P LOSS CNV" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-61-2614 
      "17P LOSS CNV" 
[1] "hr=" "1"  
D70V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  17P LOSS CNV             1   414                1
  17P LOSS WILD-TYPE       1   134                1
D70V3, multiclass
                  clus
vv                 17P LOSS CNV 17P LOSS WILD-TYPE
  OMENTUM                     1                  1
  OVARY                     414                134
  PERITONEUM OVARY            1                  1
D70V4, continuous
                    vv
clus                 I+II III  IV
  17P LOSS CNV          3 102  29
  17P LOSS WILD-TYPE    1  31   5
D70V5, multiclass
      clus
vv     17P LOSS CNV 17P LOSS WILD-TYPE
  I+II            3                  1
  III           102                 31
  IV             29                  5
D70V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS CNV          2  422
  17P LOSS WILD-TYPE    1  137
     clus
vv    17P LOSS CNV 17P LOSS WILD-TYPE
  NO             2                  1
  YES          422                137
                    vv
clus                 R0 R1 R2
  17P LOSS CNV       10 21  1
  17P LOSS WILD-TYPE  4  5  1
D70V7, multiclass
    clus
vv   17P LOSS CNV 17P LOSS WILD-TYPE
  R0           10                  4
  R1           21                  5
  R2            1                  1

Clustering(71) Variable = 17q loss
D71V1, survival
                    sevent
clus2                  0   1
  17Q LOSS CNV       155 162
  17Q LOSS WILD-TYPE 108 122
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
               317                230 
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
               162                122 
$`17Q LOSS CNV`
TCGA-04-1338 TCGA-04-1343 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 
       46.62        11.87        48.76        21.57        63.98        65.46 
TCGA-04-1361 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1517 
       32.52        33.67        76.54        71.47        82.36        19.99 
TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 
       84.20        55.40        48.89        27.88        28.64        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       36.23        31.86        47.70        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-1664 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       57.73        17.95        74.89        57.57        61.87        55.36 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 TCGA-09-2044 
       30.48        17.98         5.85         3.02        97.55         6.12 
TCGA-09-2045 TCGA-09-2049 TCGA-09-2050 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 
       35.15       112.37        71.11        39.75        20.91        26.93 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0938 TCGA-13-0714 
       25.91        81.47        18.48        33.24        19.86         6.21 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0758 TCGA-13-0762 TCGA-13-0766 
       24.59        44.55        39.58        11.38        32.25        21.40 
TCGA-13-0791 TCGA-13-0793 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 
       38.93        28.70        19.56         8.71         7.79         8.28 
TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0883 TCGA-13-0884 TCGA-13-0886 
       43.82        35.28        35.28        68.91       107.18        74.27 
TCGA-13-0887 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0901 TCGA-13-0903 
       66.64        67.99        69.01        43.36        19.36        47.38 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0916 
       48.33        47.84        44.84        37.08        27.68        21.14 
TCGA-13-0919 TCGA-13-0921 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 
       14.89         4.64         6.08        10.88         6.61         7.36 
TCGA-13-1407 TCGA-13-1409 TCGA-13-1481 TCGA-13-1482 TCGA-13-1491 TCGA-13-1492 
        6.05         6.84        87.06        61.71        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
       38.17        49.22        54.31        13.97        32.84        16.57 
TCGA-13-1505 TCGA-13-1506 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2059 
        4.21         4.41         4.14         2.56         3.88        12.23 
TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
       10.78         8.75         6.28        23.05        25.94        26.20 
TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-23-1021 TCGA-23-1024 
       27.48        19.07        16.67         2.93        47.54        15.39 
TCGA-23-1026 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1111 
       26.83         8.81        29.10        18.87         2.24         3.22 
TCGA-23-1113 TCGA-23-1120 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-2072 
       31.20         4.27        39.09        33.47        58.13        24.95 
TCGA-23-2077 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
      115.89        77.00        49.84         2.76         4.70         4.50 
TCGA-24-0968 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 
       19.63        41.56         7.66        22.32        54.08        63.55 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1418 TCGA-24-1422 TCGA-24-1423 
       47.41         6.31         6.38         7.99         0.76         6.25 
TCGA-24-1424 TCGA-24-1425 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 
        6.02         5.95         4.80        17.36        28.34        19.17 
TCGA-24-1434 TCGA-24-1463 TCGA-24-1466 TCGA-24-1467 TCGA-24-1470 TCGA-24-1471 
       18.67        72.92        45.14       105.99         3.42         1.18 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1548 TCGA-24-1550 TCGA-24-1551 TCGA-24-1555 
       26.96        57.37        16.21        41.06        51.91        88.50 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1603 TCGA-24-1604 
       39.88        19.53        44.09        45.50        90.15        88.34 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1847 TCGA-24-1849 TCGA-24-1920 
       48.33        38.24         8.32        11.28         5.75         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1930 TCGA-24-2019 TCGA-24-2023 TCGA-24-2026 
       22.65        30.21        81.11         4.87        44.84        34.82 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2036 TCGA-24-2254 TCGA-24-2267 
       14.43        53.95        18.48        64.01        57.07        47.54 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2290 TCGA-24-2295 TCGA-24-2297 
       70.45        44.58         0.82        36.23        33.11        55.86 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 
        1.02        26.93        51.06        37.02         1.02        34.98 
TCGA-25-1320 TCGA-25-1322 TCGA-25-1625 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 
       36.95         2.99        18.02         7.86         0.30        56.94 
TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-2391 
       60.59        35.54        51.22        14.93        24.99        49.05 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2404 
       38.04         3.02        12.00        45.01        19.99        29.00 
TCGA-29-1688 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 
       78.87        47.18       101.75        38.53         0.79        33.70 
TCGA-29-1697 TCGA-29-1701 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1761 
       31.17        16.90        59.67        18.25        41.95        17.00 
TCGA-29-1762 TCGA-29-1764 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1775 
       85.68        62.93        22.98        24.36        22.52        12.36 
TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 
       11.84        12.30        14.93         8.35         7.20         5.36 
TCGA-29-2427 TCGA-29-2431 TCGA-29-2432 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 
       62.47        42.25        11.84        38.07        51.91        36.26 
TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 
        2.47        15.68         0.26        48.07        44.91        34.78 
TCGA-30-1866 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-31-1950 TCGA-31-1953 
       36.62        57.57        24.26        30.05        18.77         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1575 TCGA-36-1577 TCGA-36-2529 
       42.51        44.09        28.73         8.55        25.74        35.05 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2537 TCGA-36-2538 TCGA-36-2542 TCGA-36-2545 
       33.01        29.49        25.91        25.08        21.60        18.31 
TCGA-36-2548 TCGA-36-2549 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 
       14.17         6.05         7.56         7.46         7.63        24.03 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1993 TCGA-59-2348 TCGA-59-2351 TCGA-59-2355 
       11.38        21.14        25.05       180.16       116.12         2.14 
TCGA-59-2372 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 
       44.78        20.94        31.40        18.54        27.88        31.76 
TCGA-61-1734 TCGA-61-1740 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1901 
       28.47         2.43        43.69         1.41         8.42        11.41 
TCGA-61-1903 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1915 TCGA-61-1917 
       13.02        34.13        31.30        37.02        67.73        43.43 
TCGA-61-1918 TCGA-61-1995 TCGA-61-1998 TCGA-61-2003 TCGA-61-2012 TCGA-61-2016 
       15.75         1.97         5.52         3.98        30.64         1.18 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2094 TCGA-61-2097 TCGA-61-2101 
       45.40         4.80         4.77        71.74        60.62        55.50 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2613 
       76.83        20.68        44.52       125.72        31.07 

$`17Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 
       40.24        41.00         1.81        49.15         2.01        18.51 
TCGA-04-1346 TCGA-04-1347 TCGA-04-1356 TCGA-04-1362 TCGA-04-1514 TCGA-04-1516 
       65.49        63.06        49.28        44.32        56.55        41.59 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
       38.37       119.08        29.06        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1665 TCGA-09-1674 TCGA-09-2043 TCGA-09-2048 TCGA-09-2051 
       89.33        41.59         8.55         6.15         4.50        63.09 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 
       12.46        54.31        32.28        11.70         3.88        35.41 
TCGA-10-0936 TCGA-10-0937 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 
       35.80        15.12         2.73        12.39        31.07        15.19 
TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0760 TCGA-13-0761 
       17.79        55.17         2.47        11.18        11.54        34.06 
TCGA-13-0764 TCGA-13-0768 TCGA-13-0792 TCGA-13-0794 TCGA-13-0800 TCGA-13-0802 
       31.04         8.42        36.72        30.35         8.12         8.19 
TCGA-13-0807 TCGA-13-0885 TCGA-13-0888 TCGA-13-0889 TCGA-13-0897 TCGA-13-0899 
       13.61        91.40        70.39        61.81        57.47        56.15 
TCGA-13-0900 TCGA-13-0906 TCGA-13-0912 TCGA-13-0913 TCGA-13-0920 TCGA-13-0923 
       57.07        44.94        34.06        29.98        13.81         6.41 
TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1483 
        5.92         4.70         4.21         5.33        54.61        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1496 
       98.04        20.68        22.39        70.82        82.88         4.24 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1507 TCGA-13-1512 TCGA-13-2057 TCGA-13-2060 
       37.61        38.37         4.77         3.09        14.24         8.58 
TCGA-20-0996 TCGA-20-1683 TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 TCGA-23-1027 
       72.20        25.38         2.66        42.51        40.54        31.73 
TCGA-23-1028 TCGA-23-1109 TCGA-23-1110 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 
       49.41        51.35        54.51        68.68         4.57        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1121 TCGA-23-1809 TCGA-23-2078 TCGA-23-2079 
       86.01       129.96         6.38         0.53        87.48        91.66 
TCGA-24-0966 TCGA-24-0970 TCGA-24-0975 TCGA-24-1417 TCGA-24-1419 TCGA-24-1426 
        7.63        11.64        21.80         7.82         7.86         5.36 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 TCGA-24-1469 TCGA-24-1474 TCGA-24-1546 
       43.53         8.55        12.46         9.11        22.19        64.27 
TCGA-24-1549 TCGA-24-1552 TCGA-24-1553 TCGA-24-1556 TCGA-24-1563 TCGA-24-1564 
       56.58        41.39        58.09        70.62        47.70        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 
       10.26        17.23         3.48         3.72         3.81         4.37 
TCGA-24-1850 TCGA-24-1927 TCGA-24-1928 TCGA-24-2020 TCGA-24-2024 TCGA-24-2027 
        5.49        16.41        11.05       151.99        58.16       109.68 
TCGA-24-2035 TCGA-24-2038 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2271 
       28.18        44.48        36.16         0.79         0.36        31.63 
TCGA-24-2289 TCGA-24-2293 TCGA-24-2298 TCGA-25-1314 TCGA-25-1319 TCGA-25-1321 
       67.36        16.64        53.26        31.99        65.00        33.96 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
       12.00         2.96        18.58        15.78         0.36        20.58 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2392 TCGA-25-2400 TCGA-25-2401 
       18.05        85.05        13.02         1.02        42.02         2.96 
TCGA-25-2408 TCGA-25-2409 TCGA-29-1690 TCGA-29-1698 TCGA-29-1699 TCGA-29-1702 
       30.97        26.96        44.71        68.28         0.53        18.64 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1763 TCGA-29-1766 TCGA-29-1768 TCGA-29-1774 
       29.23        34.62        66.77        39.09        31.23        17.29 
TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2428 TCGA-29-2429 TCGA-29-2434 
       34.62        86.17        65.00        45.11         4.87        11.47 
TCGA-29-2436 TCGA-30-1862 TCGA-30-1867 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
        9.76         6.08         1.18        48.79        45.57        30.18 
TCGA-31-1951 TCGA-31-1959 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 
       22.45         2.17        29.06        21.53        22.85        22.55 
TCGA-36-1576 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2534 TCGA-36-2540 
       30.05        27.85        24.23        24.69        29.79        23.80 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2547 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 
        2.24        20.98        20.52        16.14        11.47        14.30 
TCGA-42-2587 TCGA-42-2588 TCGA-42-2593 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 
        9.07         9.44         1.48         1.74        22.32        28.96 
TCGA-57-1994 TCGA-59-2349 TCGA-59-2350 TCGA-59-2352 TCGA-59-2354 TCGA-59-2363 
       25.02        80.12        22.32         9.40        34.39         5.39 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1730 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
       11.11         8.05         4.34        48.79        44.84        35.80 
TCGA-61-1741 TCGA-61-1900 TCGA-61-1904 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
       33.67         5.79         9.07        42.48        48.92        56.58 
TCGA-61-1919 TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 TCGA-61-2009 TCGA-61-2017 
       38.17        14.50        17.98        30.61        39.85        45.96 
TCGA-61-2092 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2102 TCGA-61-2113 
       51.72        61.64        58.39        65.49         6.48        22.22 
TCGA-61-2612 TCGA-61-2614 
        6.35         8.58 

      17Q LOSS CNV 17Q LOSS WILD-TYPE 
              0.26               0.36 
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
            180.16             151.99 
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
            28.640             26.415 
[1] "0.3 - 180.2 (28.6)" "0.4 - 152.0 (26.4)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
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"17Q LOSS WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
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      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
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"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
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"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
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        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
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      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
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      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
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      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
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      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
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      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
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      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
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"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
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      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
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      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
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      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
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      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
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      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
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"17Q LOSS WILD-TYPE" 
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      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
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      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
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      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
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      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
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      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
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      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
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      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
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      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
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      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
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"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
      "17Q LOSS CNV"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
      "17Q LOSS CNV"       "17Q LOSS CNV"       "17Q LOSS CNV" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-61-2614 
"17Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D71V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  17Q LOSS CNV             1   318                1
  17Q LOSS WILD-TYPE       1   230                1
D71V3, multiclass
                  clus
vv                 17Q LOSS CNV 17Q LOSS WILD-TYPE
  OMENTUM                     1                  1
  OVARY                     318                230
  PERITONEUM OVARY            1                  1
D71V4, continuous
                    vv
clus                 I+II III IV
  17Q LOSS CNV          2  73 21
  17Q LOSS WILD-TYPE    2  60 13
D71V5, multiclass
      clus
vv     17Q LOSS CNV 17Q LOSS WILD-TYPE
  I+II            2                  2
  III            73                 60
  IV             21                 13
D71V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS CNV          3  325
  17Q LOSS WILD-TYPE    0  234
     clus
vv    17Q LOSS CNV 17Q LOSS WILD-TYPE
  NO             3                  0
  YES          325                234
                    vv
clus                 R0 R1 R2
  17Q LOSS CNV        7 13  0
  17Q LOSS WILD-TYPE  7 13  2
D71V7, multiclass
    clus
vv   17Q LOSS CNV 17Q LOSS WILD-TYPE
  R0            7                  7
  R1           13                 13
  R2            0                  2

Clustering(72) Variable = 18p loss
D72V1, survival
                    sevent
clus2                  0   1
  18P LOSS CNV        83  95
  18P LOSS WILD-TYPE 180 189
      18P LOSS CNV 18P LOSS WILD-TYPE 
               178                369 
      18P LOSS CNV 18P LOSS WILD-TYPE 
                95                189 
$`18P LOSS CNV`
TCGA-04-1338 TCGA-04-1351 TCGA-04-1362 TCGA-04-1364 TCGA-04-1514 TCGA-04-1517 
       46.62        65.46        44.32        33.67        56.55        19.99 
TCGA-04-1649 TCGA-04-1651 TCGA-09-1666 TCGA-09-1667 TCGA-09-1672 TCGA-09-1673 
       64.64        36.23        57.57        61.87         5.85         3.02 
TCGA-09-2044 TCGA-09-2053 TCGA-10-0926 TCGA-10-0927 TCGA-10-0931 TCGA-13-0714 
        6.12        39.75        25.91        81.47        32.28         6.21 
TCGA-13-0720 TCGA-13-0726 TCGA-13-0727 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 
       44.55        31.07        15.19        55.17         2.47        11.18 
TCGA-13-0758 TCGA-13-0766 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0800 
       11.38        21.40        36.72        28.70        30.35         8.12 
TCGA-13-0803 TCGA-13-0804 TCGA-13-0807 TCGA-13-0883 TCGA-13-0891 TCGA-13-0903 
       43.82        35.28        13.61        68.91        69.01        47.38 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0924 TCGA-13-1403 TCGA-13-1405 
       37.08        27.68        34.06         6.08        10.88         7.36 
TCGA-13-1409 TCGA-13-1487 TCGA-13-1495 TCGA-13-1498 TCGA-13-1506 TCGA-13-2061 
        6.84        22.39        49.22        37.61         4.41        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0990 TCGA-20-1683 TCGA-20-1684 TCGA-20-1687 
        8.75         6.28        25.94        25.38        19.07         2.66 
TCGA-23-1021 TCGA-23-1027 TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 
       47.54        31.73         3.22        31.20         4.57        33.30 
TCGA-23-1118 TCGA-23-1122 TCGA-23-2072 TCGA-23-2079 TCGA-23-2084 TCGA-23-2641 
       86.01        39.09        24.95        91.66        49.84         2.76 
TCGA-23-2643 TCGA-24-0966 TCGA-24-0970 TCGA-24-0982 TCGA-24-1104 TCGA-24-1413 
        4.70         7.63        11.64        22.32        63.55         6.31 
TCGA-24-1416 TCGA-24-1423 TCGA-24-1425 TCGA-24-1431 TCGA-24-1463 TCGA-24-1470 
        6.38         6.25         5.95        19.17        72.92         3.42 
TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1551 
        1.18        26.96        57.37        64.27        16.21        51.91 
TCGA-24-1557 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1603 TCGA-24-1614 
       39.88        44.09        45.50        47.70        90.15        48.33 
TCGA-24-1843 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 TCGA-24-1928 
        3.48         5.75         9.80        22.65        16.41        11.05 
TCGA-24-2023 TCGA-24-2027 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2293 
       44.84       109.68        47.54        31.63        70.45        16.64 
TCGA-24-2298 TCGA-25-1313 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1320 
       53.26        26.93        51.06        37.02         1.02        36.95 
TCGA-25-1322 TCGA-25-1627 TCGA-25-1630 TCGA-25-1632 TCGA-25-1634 TCGA-25-1877 
        2.99         0.36         7.86        56.94        35.54        18.05 
TCGA-25-1878 TCGA-25-2042 TCGA-25-2393 TCGA-25-2404 TCGA-25-2409 TCGA-29-1694 
       85.05        13.02        38.04        29.00        26.96        38.53 
TCGA-29-1697 TCGA-29-1701 TCGA-29-1703 TCGA-29-1707 TCGA-29-1762 TCGA-29-1763 
       31.17        16.90        59.67        41.95        85.68        66.77 
TCGA-29-1768 TCGA-29-1770 TCGA-29-1775 TCGA-29-1777 TCGA-29-1783 TCGA-29-2414 
       31.23        24.36        12.36        12.30         7.20        86.17 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2434 TCGA-30-1714 TCGA-30-1856 TCGA-30-1860 
       62.47        45.11        11.47        38.07        15.68        44.91 
TCGA-30-1861 TCGA-30-1880 TCGA-30-1891 TCGA-30-1892 TCGA-31-1946 TCGA-36-1568 
       34.78        57.57        30.05        48.79        30.18        28.73 
TCGA-36-1569 TCGA-36-1575 TCGA-36-1577 TCGA-36-1580 TCGA-36-2530 TCGA-36-2532 
       29.06         8.55        25.74        24.23        33.01        29.49 
TCGA-36-2534 TCGA-36-2542 TCGA-36-2543 TCGA-36-2548 TCGA-36-2552 TCGA-42-2587 
       29.79        21.60         2.24        14.17        11.47         9.07 
TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1993 TCGA-59-2350 TCGA-59-2351 
        7.63         1.48        24.03        25.05        22.32       116.12 
TCGA-59-2354 TCGA-59-2363 TCGA-61-1724 TCGA-61-1727 TCGA-61-1741 TCGA-61-1743 
       34.39         5.39        20.94        18.54        33.67        43.69 
TCGA-61-1895 TCGA-61-1995 TCGA-61-2002 TCGA-61-2009 TCGA-61-2094 TCGA-61-2098 
        1.41         1.97        17.98        39.85        71.74        65.49 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
        6.48        76.83        20.68        44.52 

$`18P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 
       40.24        41.00         1.81        49.15         2.01        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       11.87        65.49        63.06        48.76        21.57        63.98 
TCGA-04-1356 TCGA-04-1361 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1516 
       49.28        32.52        76.54        71.47        82.36        41.59 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 
       38.37       119.08        29.06        84.20        55.40        48.89 
TCGA-04-1646 TCGA-04-1648 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       27.88        28.64        31.86        47.70        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
        9.47        57.73        17.95        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 
       89.33        74.89        41.59        55.36        30.48        17.98 
TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 
        8.55        97.55         6.15        35.15         4.50       112.37 
TCGA-09-2050 TCGA-09-2051 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       71.11        63.09        20.91        26.93        12.46        54.31 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       18.48        33.24        11.70         3.88        35.41        35.80 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0717 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
       15.12        19.86        24.59        39.58         2.73        12.39 
TCGA-13-0730 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0768 
       17.79        11.54        34.06        32.25        31.04         8.42 
TCGA-13-0791 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 TCGA-13-0802 
       38.93        19.56         8.71         7.79         8.28         8.19 
TCGA-13-0805 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 
       35.28       107.18        91.40        74.27        66.64        70.39 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       61.81        67.99        43.36        57.47        56.15        57.07 
TCGA-13-0901 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0913 
       19.36        48.33        47.84        44.94        44.84        29.98 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-1404 
       21.14        14.89        13.81         4.64         6.41         6.61 
TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 
        6.05         5.92         4.70         4.21         5.33        54.61 
TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 
       87.06        61.71        29.39        98.04        20.68        70.82 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1496 TCGA-13-1497 
       82.88        52.44        73.55        38.17         4.24        54.31 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1507 
       38.37        13.97        32.84        16.57         4.21         4.77 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 
        4.14         2.56         3.88         3.09        14.24        12.23 
TCGA-13-2060 TCGA-20-0987 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1685 
        8.58        23.05        26.20        72.20        27.48        16.67 
TCGA-20-1686 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1028 
        2.93        42.51        40.54        15.39        26.83        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1114 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1123 TCGA-23-1124 
       68.68       129.96         4.27         6.38        33.47        58.13 
TCGA-23-1809 TCGA-23-2077 TCGA-23-2078 TCGA-23-2081 TCGA-23-2645 TCGA-24-0968 
        0.53       115.89        87.48        77.00         4.50        19.63 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-1103 TCGA-24-1105 TCGA-24-1417 
       21.80        41.56         7.66        54.08        47.41         7.82 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1424 TCGA-24-1426 TCGA-24-1427 
        7.99         7.86         0.76         6.02         5.36         4.80 
TCGA-24-1428 TCGA-24-1430 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 
       17.36        28.34        18.67        43.53         8.55        12.46 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1474 TCGA-24-1549 TCGA-24-1550 
       45.14       105.99         9.11        22.19        56.58        41.06 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1558 TCGA-24-1564 
       41.39        58.09        88.50        70.62        19.53        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1604 TCGA-24-1616 TCGA-24-1842 TCGA-24-1844 
       10.26        17.23        88.34        38.24         8.32         3.72 
TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1850 TCGA-24-1924 TCGA-24-1930 
        3.81         4.37        11.28         5.49        30.21        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2024 TCGA-24-2026 TCGA-24-2029 TCGA-24-2030 
        4.87       151.99        58.16        34.82        14.43        53.95 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 
       18.48        28.18        64.01        44.48        57.07        36.16 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 
        0.79         0.36        44.58         0.82        67.36        36.23 
TCGA-24-2295 TCGA-24-2297 TCGA-25-1312 TCGA-25-1314 TCGA-25-1318 TCGA-25-1319 
       33.11        55.86         1.02        31.99        34.98        65.00 
TCGA-25-1321 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
       33.96        12.00         2.96        18.58        18.02        15.78 
TCGA-25-1628 TCGA-25-1631 TCGA-25-1633 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 
       20.58         0.30        60.59        51.22        14.93        24.99 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
       49.05         1.02         3.02        12.00        45.01        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2408 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 
       42.02         2.96        30.97        78.87        44.71        47.18 
TCGA-29-1693 TCGA-29-1695 TCGA-29-1696 TCGA-29-1698 TCGA-29-1699 TCGA-29-1702 
      101.75         0.79        33.70        68.28         0.53        18.64 
TCGA-29-1705 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1764 TCGA-29-1766 
       18.25        29.23        34.62        17.00        62.93        39.09 
TCGA-29-1769 TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 TCGA-29-1778 TCGA-29-1781 
       22.98        22.52        17.29        11.84        14.93         8.35 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2425 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
        5.36        34.62        65.00         4.87        42.25        11.84 
TCGA-29-2436 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1857 TCGA-30-1859 
        9.76        51.91        36.26         2.47         0.26        48.07 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1887 TCGA-31-1944 TCGA-31-1950 
        6.08        36.62         1.18        24.26        45.57        18.77 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1570 
       22.45         6.71        42.51        44.09         2.17        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 TCGA-36-1578 TCGA-36-1581 TCGA-36-2529 
       22.85        22.55        30.05        27.85        24.69        35.05 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       25.91        25.08        23.80        20.98        18.31        20.52 
TCGA-36-2549 TCGA-36-2551 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
        6.05        16.14        14.30         9.44         7.56         7.46 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1994 
       11.38        21.14         1.74        22.32        28.96        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2352 TCGA-59-2355 TCGA-59-2372 TCGA-61-1721 
      180.16        80.12         9.40         2.14        44.78        11.11 
TCGA-61-1722 TCGA-61-1725 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 
        8.05        31.40        27.88         4.34        31.76        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1899 TCGA-61-1900 
       48.79        44.84        35.80         2.43         8.42         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
       11.41        13.02         9.07        34.13        31.30        37.02 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
       42.48        48.92        56.58        67.73        43.43        15.75 
TCGA-61-1919 TCGA-61-1998 TCGA-61-2000 TCGA-61-2003 TCGA-61-2008 TCGA-61-2012 
       38.17         5.52        14.50         3.98        30.61        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
        1.18        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2101 TCGA-61-2111 TCGA-61-2113 
       61.64        58.39        60.62        55.50       125.72        22.22 
TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        6.35        31.07         8.58 

      18P LOSS CNV 18P LOSS WILD-TYPE 
              0.36               0.26 
      18P LOSS CNV 18P LOSS WILD-TYPE 
            116.12             180.16 
      18P LOSS CNV 18P LOSS WILD-TYPE 
            28.865             27.880 
[1] "0.4 - 116.1 (28.9)" "0.3 - 180.2 (27.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"18P LOSS WILD-TYPE"       "18P LOSS CNV"       "18P LOSS CNV" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
      "18P LOSS CNV" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"18P LOSS WILD-TYPE"       "18P LOSS CNV"       "18P LOSS CNV" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"18P LOSS WILD-TYPE"       "18P LOSS CNV"       "18P LOSS CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"18P LOSS WILD-TYPE"       "18P LOSS CNV"       "18P LOSS CNV" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
      "18P LOSS CNV"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
      "18P LOSS CNV"       "18P LOSS CNV"       "18P LOSS CNV" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
      "18P LOSS CNV"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
      "18P LOSS CNV"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
      "18P LOSS CNV"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
      "18P LOSS CNV" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
      "18P LOSS CNV"       "18P LOSS CNV"       "18P LOSS CNV" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
      "18P LOSS CNV"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
      "18P LOSS CNV" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
      "18P LOSS CNV"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
      "18P LOSS CNV" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
      "18P LOSS CNV"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
      "18P LOSS CNV" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
      "18P LOSS CNV" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"18P LOSS WILD-TYPE"       "18P LOSS CNV"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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      "18P LOSS CNV" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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      "18P LOSS CNV"       "18P LOSS CNV"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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      "18P LOSS CNV"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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      "18P LOSS CNV" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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      "18P LOSS CNV"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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      "18P LOSS CNV" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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      "18P LOSS CNV"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
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      "18P LOSS CNV" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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      "18P LOSS CNV" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE"       "18P LOSS CNV"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
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      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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      "18P LOSS CNV" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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      "18P LOSS CNV"       "18P LOSS CNV"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
      "18P LOSS CNV"       "18P LOSS CNV"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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      "18P LOSS CNV" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
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      "18P LOSS CNV"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
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      "18P LOSS CNV"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"18P LOSS WILD-TYPE"       "18P LOSS CNV"       "18P LOSS CNV" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
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      "18P LOSS CNV"       "18P LOSS CNV"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
      "18P LOSS CNV" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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      "18P LOSS CNV"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
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      "18P LOSS CNV" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE"       "18P LOSS CNV"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE"       "18P LOSS CNV"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"       "18P LOSS CNV"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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      "18P LOSS CNV" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
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        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
      "18P LOSS CNV"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"18P LOSS WILD-TYPE"       "18P LOSS CNV"       "18P LOSS CNV" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
      "18P LOSS CNV"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-2614 
"18P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D72V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  18P LOSS CNV             1   179                0
  18P LOSS WILD-TYPE       1   369                2
D72V3, multiclass
                  clus
vv                 18P LOSS CNV 18P LOSS WILD-TYPE
  OMENTUM                     1                  1
  OVARY                     179                369
  PERITONEUM OVARY            0                  2
D72V4, continuous
                    vv
clus                 I+II III IV
  18P LOSS CNV          1  38 10
  18P LOSS WILD-TYPE    3  95 24
D72V5, multiclass
      clus
vv     18P LOSS CNV 18P LOSS WILD-TYPE
  I+II            1                  3
  III            38                 95
  IV             10                 24
D72V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS CNV          2  181
  18P LOSS WILD-TYPE    1  378
     clus
vv    18P LOSS CNV 18P LOSS WILD-TYPE
  NO             2                  1
  YES          181                378
                    vv
clus                 R0 R1 R2
  18P LOSS CNV        5 11  1
  18P LOSS WILD-TYPE  9 15  1
D72V7, multiclass
    clus
vv   18P LOSS CNV 18P LOSS WILD-TYPE
  R0            5                  9
  R1           11                 15
  R2            1                  1

Clustering(73) Variable = 18q loss
D73V1, survival
                    sevent
clus2                  0   1
  18Q LOSS CNV       109 116
  18Q LOSS WILD-TYPE 154 168
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
               225                322 
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
               116                168 
$`18Q LOSS CNV`
TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1347 TCGA-04-1351 TCGA-04-1356 
        1.81        49.15        46.62        63.06        65.46        49.28 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1517 TCGA-04-1649 TCGA-04-1651 
       32.52        44.32        33.67        19.99        64.64        36.23 
TCGA-09-1667 TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
       61.87         5.85         3.02        97.55         6.15         6.12 
TCGA-09-2048 TCGA-09-2050 TCGA-09-2053 TCGA-09-2054 TCGA-09-2056 TCGA-10-0926 
        4.50        71.11        39.75        20.91        12.46        25.91 
TCGA-10-0927 TCGA-10-0931 TCGA-13-0714 TCGA-13-0720 TCGA-13-0726 TCGA-13-0727 
       81.47        32.28         6.21        44.55        31.07        15.19 
TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0766 
       17.79        55.17         2.47        11.18        11.38        21.40 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0800 TCGA-13-0803 TCGA-13-0804 
       36.72        28.70        30.35         8.12        43.82        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0886 TCGA-13-0899 TCGA-13-0903 TCGA-13-0906 
       13.61        68.91        74.27        56.15        47.38        44.94 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0924 
       44.84        37.08        27.68        34.06        29.98         6.08 
TCGA-13-1403 TCGA-13-1405 TCGA-13-1408 TCGA-13-1409 TCGA-13-1483 TCGA-13-1487 
       10.88         7.36         5.92         6.84        29.39        22.39 
TCGA-13-1495 TCGA-13-1498 TCGA-13-1500 TCGA-13-1505 TCGA-13-1506 TCGA-13-2057 
       49.22        37.61        13.97         4.21         4.41        14.24 
TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0990 TCGA-20-1682 
       12.23        10.78         8.75         6.28        25.94        27.48 
TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
       25.38        19.07        16.67         2.93         2.66        47.54 
TCGA-23-1023 TCGA-23-1027 TCGA-23-1028 TCGA-23-1032 TCGA-23-1111 TCGA-23-1113 
       40.54        31.73        49.41         2.24         3.22        31.20 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1122 TCGA-23-1124 
        4.57        33.30        86.01       129.96        39.09        58.13 
TCGA-23-2072 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 
       24.95        91.66        77.00        49.84         2.76         4.70 
TCGA-24-0966 TCGA-24-0970 TCGA-24-0982 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
        7.63        11.64        22.32        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1418 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1428 
        6.38         7.99         6.25         6.02         5.95        17.36 
TCGA-24-1463 TCGA-24-1470 TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
       72.92         3.42         1.18        26.96        57.37        64.27 
TCGA-24-1548 TCGA-24-1552 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       16.21        41.39        39.88        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1603 TCGA-24-1614 TCGA-24-1843 TCGA-24-1849 TCGA-24-1920 
       47.70        90.15        48.33         3.48         5.75         9.80 
TCGA-24-1923 TCGA-24-1927 TCGA-24-1928 TCGA-24-2020 TCGA-24-2023 TCGA-24-2027 
       22.65        16.41        11.05       151.99        44.84       109.68 
TCGA-24-2029 TCGA-24-2035 TCGA-24-2267 TCGA-24-2271 TCGA-24-2288 TCGA-24-2289 
       14.43        28.18        47.54        31.63         0.82        67.36 
TCGA-24-2293 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1315 TCGA-25-1316 
       16.64        53.26         1.02        26.93        51.06        37.02 
TCGA-25-1317 TCGA-25-1321 TCGA-25-1322 TCGA-25-1625 TCGA-25-1627 TCGA-25-1632 
        1.02        33.96         2.99        18.02         0.36        56.94 
TCGA-25-1634 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2393 TCGA-25-2401 
       35.54        18.05        85.05        13.02        38.04         2.96 
TCGA-25-2404 TCGA-25-2409 TCGA-29-1694 TCGA-29-1697 TCGA-29-1701 TCGA-29-1702 
       29.00        26.96        38.53        31.17        16.90        18.64 
TCGA-29-1703 TCGA-29-1707 TCGA-29-1762 TCGA-29-1763 TCGA-29-1768 TCGA-29-1770 
       59.67        41.95        85.68        66.77        31.23        24.36 
TCGA-29-1775 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-2414 TCGA-29-2427 
       12.36        12.30         8.35         7.20        86.17        62.47 
TCGA-29-2428 TCGA-29-2434 TCGA-30-1714 TCGA-30-1856 TCGA-30-1861 TCGA-30-1880 
       45.11        11.47        38.07        15.68        34.78        57.57 
TCGA-30-1891 TCGA-31-1944 TCGA-31-1946 TCGA-31-1959 TCGA-36-1569 TCGA-36-1570 
       30.05        45.57        30.18         2.17        29.06        21.53 
TCGA-36-1571 TCGA-36-1575 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-2532 
       22.85         8.55        25.74        27.85        24.23        29.49 
TCGA-36-2534 TCGA-36-2538 TCGA-36-2542 TCGA-36-2543 TCGA-36-2548 TCGA-36-2552 
       29.79        25.08        21.60         2.24        14.17        11.47 
TCGA-42-2587 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1585 
        9.07         7.63         1.48        24.03        11.38         1.74 
TCGA-57-1992 TCGA-57-1993 TCGA-59-2350 TCGA-59-2351 TCGA-59-2354 TCGA-59-2363 
       28.96        25.05        22.32       116.12        34.39         5.39 
TCGA-61-1724 TCGA-61-1737 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1906 
       20.94        44.84        33.67        43.69         1.41        34.13 
TCGA-61-1995 TCGA-61-2002 TCGA-61-2094 TCGA-61-2097 TCGA-61-2102 TCGA-61-2104 
        1.97        17.98        71.74        60.62         6.48        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2612 
       20.68        44.52         6.35 

$`18Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1337 TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 
       40.24        41.00         2.01        18.51        11.87        65.49 
TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 
       48.76        21.57        63.98        76.54        71.47        82.36 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 
       56.55        41.59        38.37       119.08        29.06        84.20 
TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1652 TCGA-04-1654 
       55.40        48.89        27.88        28.64        31.86        47.70 
TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 
       45.34        29.16         9.47        57.73        17.95        35.54 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 
        9.96        38.43        89.33        74.89        41.59        57.57 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1674 TCGA-09-2045 TCGA-09-2049 
       55.36        30.48        17.98         8.55        35.15       112.37 
TCGA-09-2051 TCGA-09-2055 TCGA-10-0925 TCGA-10-0928 TCGA-10-0930 TCGA-10-0933 
       63.09        26.93        54.31        18.48        33.24        11.70 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0717 
        3.88        35.41        35.80        15.12        19.86        24.59 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 
       39.58         2.73        12.39        11.54        34.06        32.25 
TCGA-13-0764 TCGA-13-0768 TCGA-13-0791 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       31.04         8.42        38.93        19.56         8.71         7.79 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0805 TCGA-13-0884 TCGA-13-0885 TCGA-13-0887 
        8.28         8.19        35.28       107.18        91.40        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 
       70.39        61.81        67.99        69.01        43.36        57.47 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0904 TCGA-13-0905 TCGA-13-0916 TCGA-13-0919 
       57.07        19.36        48.33        47.84        21.14        14.89 
TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-1404 TCGA-13-1407 TCGA-13-1410 
       13.81         4.64         6.41         6.61         6.05         4.70 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1484 
        4.21         5.33        54.61        87.06        61.71        98.04 
TCGA-13-1485 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 
       20.68        70.82        82.88        52.44        73.55        38.17 
TCGA-13-1496 TCGA-13-1497 TCGA-13-1499 TCGA-13-1501 TCGA-13-1504 TCGA-13-1507 
        4.24        54.31        38.37        32.84        16.57         4.77 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2060 TCGA-20-0987 
        4.14         2.56         3.88         3.09         8.58        23.05 
TCGA-20-0991 TCGA-20-0996 TCGA-23-1022 TCGA-23-1024 TCGA-23-1026 TCGA-23-1029 
       26.20        72.20        42.51        15.39        26.83         8.81 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1109 TCGA-23-1110 TCGA-23-1114 TCGA-23-1120 
       29.10        18.87        51.35        54.51        68.68         4.27 
TCGA-23-1121 TCGA-23-1123 TCGA-23-1809 TCGA-23-2077 TCGA-23-2078 TCGA-23-2645 
        6.38        33.47         0.53       115.89        87.48         4.50 
TCGA-24-0968 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-1103 TCGA-24-1417 
       19.63        21.80        41.56         7.66        54.08         7.82 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1426 TCGA-24-1427 TCGA-24-1430 TCGA-24-1431 
        7.86         0.76         5.36         4.80        28.34        19.17 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 
       18.67        43.53         8.55        12.46        45.14       105.99 
TCGA-24-1469 TCGA-24-1474 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1553 
        9.11        22.19        56.58        41.06        51.91        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1604 
       88.50        70.62        25.87        10.26        17.23        88.34 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 
       38.24         8.32         3.72         3.81         4.37        11.28 
TCGA-24-1850 TCGA-24-1924 TCGA-24-1930 TCGA-24-2019 TCGA-24-2024 TCGA-24-2026 
        5.49        30.21        81.11         4.87        58.16        34.82 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 
       53.95        18.48        64.01        44.48        57.07        36.16 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2280 TCGA-24-2281 TCGA-24-2290 TCGA-24-2295 
        0.79         0.36        70.45        44.58        36.23        33.11 
TCGA-24-2297 TCGA-25-1314 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1323 
       55.86        31.99        34.98        65.00        36.95        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 
        2.96        18.58        15.78        20.58         7.86         0.30 
TCGA-25-1633 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-2391 TCGA-25-2392 
       60.59        51.22        14.93        24.99        49.05         1.02 
TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2408 
        3.02        12.00        45.01        19.99        42.02        30.97 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1695 TCGA-29-1696 
       78.87        44.71        47.18       101.75         0.79        33.70 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1705 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       68.28         0.53        18.25        29.23        34.62        17.00 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1769 TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 
       62.93        39.09        22.98        22.52        17.29        11.84 
TCGA-29-1778 TCGA-29-1784 TCGA-29-1785 TCGA-29-2425 TCGA-29-2429 TCGA-29-2431 
       14.93         5.36        34.62        65.00         4.87        42.25 
TCGA-29-2432 TCGA-29-2436 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1857 
       11.84         9.76        51.91        36.26         2.47         0.26 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1887 
       48.07        44.91         6.08        36.62         1.18        24.26 
TCGA-30-1892 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 
       48.79        18.77        22.45         6.71        42.51        44.09 
TCGA-36-1568 TCGA-36-1574 TCGA-36-1576 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 
       28.73        22.55        30.05        24.69        35.05        33.01 
TCGA-36-2537 TCGA-36-2540 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2549 
       25.91        23.80        20.98        18.31        20.52         6.05 
TCGA-36-2551 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-57-1584 
       16.14        14.30         9.44         7.56         7.46        21.14 
TCGA-57-1586 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2352 TCGA-59-2355 
       22.32        25.02       180.16        80.12         9.40         2.14 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 
       44.78        11.11         8.05        31.40        18.54        27.88 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1738 TCGA-61-1740 
        4.34        31.76        28.47        48.79        35.80         2.43 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1907 
        8.42         5.79        11.41        13.02         9.07        31.30 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 
       37.02        42.48        48.92        56.58        67.73        43.43 
TCGA-61-1918 TCGA-61-1919 TCGA-61-1998 TCGA-61-2000 TCGA-61-2003 TCGA-61-2008 
       15.75        38.17         5.52        14.50         3.98        30.61 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
       39.85        30.64         1.18        45.96        45.40         4.80 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 
        4.77        51.72        61.64        58.39        65.49        55.50 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2613 TCGA-61-2614 
      125.72        22.22        31.07         8.58 

      18Q LOSS CNV 18Q LOSS WILD-TYPE 
              0.36               0.26 
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
            151.99             180.16 
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
             26.93              29.13 
[1] "0.4 - 152.0 (26.9)" "0.3 - 180.2 (29.1)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
      "18Q LOSS CNV"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV"       "18Q LOSS CNV"       "18Q LOSS CNV" 
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      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV"       "18Q LOSS CNV"       "18Q LOSS CNV" 
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      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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      "18Q LOSS CNV"       "18Q LOSS CNV"       "18Q LOSS CNV" 
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      "18Q LOSS CNV"       "18Q LOSS CNV"       "18Q LOSS CNV" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV"       "18Q LOSS CNV"       "18Q LOSS CNV" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
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      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV"       "18Q LOSS CNV"       "18Q LOSS CNV" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
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"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV"       "18Q LOSS CNV"       "18Q LOSS CNV" 
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      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV"       "18Q LOSS CNV"       "18Q LOSS CNV" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV"       "18Q LOSS CNV"       "18Q LOSS CNV" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
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"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV"       "18Q LOSS CNV"       "18Q LOSS CNV" 
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"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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      "18Q LOSS CNV"       "18Q LOSS CNV"       "18Q LOSS CNV" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
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      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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      "18Q LOSS CNV"       "18Q LOSS CNV"       "18Q LOSS CNV" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV"       "18Q LOSS CNV"       "18Q LOSS CNV" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
      "18Q LOSS CNV"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "18Q LOSS CNV"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
      "18Q LOSS CNV"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-61-2614 
"18Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D73V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  18Q LOSS CNV             1   226                0
  18Q LOSS WILD-TYPE       1   322                2
D73V3, multiclass
                  clus
vv                 18Q LOSS CNV 18Q LOSS WILD-TYPE
  OMENTUM                     1                  1
  OVARY                     226                322
  PERITONEUM OVARY            0                  2
D73V4, continuous
                    vv
clus                 I+II III IV
  18Q LOSS CNV          3  54 12
  18Q LOSS WILD-TYPE    1  79 22
D73V5, multiclass
      clus
vv     18Q LOSS CNV 18Q LOSS WILD-TYPE
  I+II            3                  1
  III            54                 79
  IV             12                 22
D73V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS CNV          2  231
  18Q LOSS WILD-TYPE    1  328
     clus
vv    18Q LOSS CNV 18Q LOSS WILD-TYPE
  NO             2                  1
  YES          231                328
                    vv
clus                 R0 R1 R2
  18Q LOSS CNV        5 12  1
  18Q LOSS WILD-TYPE  9 14  1
D73V7, multiclass
    clus
vv   18Q LOSS CNV 18Q LOSS WILD-TYPE
  R0            5                  9
  R1           12                 14
  R2            1                  1

Clustering(74) Variable = 19p loss
D74V1, survival
                    sevent
clus2                  0   1
  19P LOSS CNV        66  73
  19P LOSS WILD-TYPE 197 211
      19P LOSS CNV 19P LOSS WILD-TYPE 
               139                408 
      19P LOSS CNV 19P LOSS WILD-TYPE 
                73                211 
$`19P LOSS CNV`
TCGA-04-1343 TCGA-04-1347 TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 TCGA-04-1362 
       11.87        63.06        21.57        63.98        49.28        44.32 
TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1517 TCGA-04-1638 
       33.67        76.54        71.47        82.36        19.99        55.40 
TCGA-04-1644 TCGA-04-1646 TCGA-04-1654 TCGA-04-1655 TCGA-09-0366 TCGA-09-0369 
       48.89        27.88        47.70        45.34        57.73        35.54 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1672 TCGA-09-1673 TCGA-09-2049 TCGA-09-2051 
        9.96        38.43         5.85         3.02       112.37        63.09 
TCGA-09-2053 TCGA-09-2055 TCGA-09-2056 TCGA-10-0928 TCGA-10-0936 TCGA-10-0937 
       39.75        26.93        12.46        18.48        35.80        15.12 
TCGA-13-0723 TCGA-13-0730 TCGA-13-0751 TCGA-13-0762 TCGA-13-0800 TCGA-13-0803 
       39.58        17.79        55.17        32.25         8.12        43.82 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0899 TCGA-13-0908 TCGA-13-0911 TCGA-13-0919 
       91.40        74.27        56.15        44.84        27.68        14.89 
TCGA-13-0921 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1411 
        4.64         6.08        10.88         6.61         7.36         4.21 
TCGA-13-1412 TCGA-13-1483 TCGA-13-1489 TCGA-13-1492 TCGA-13-1496 TCGA-13-1498 
        5.33        29.39        82.88        73.55         4.24        37.61 
TCGA-13-1504 TCGA-13-2060 TCGA-23-1027 TCGA-23-1030 TCGA-23-1032 TCGA-23-1119 
       16.57         8.58        31.73        29.10         2.24       129.96 
TCGA-23-1120 TCGA-23-1124 TCGA-23-2643 TCGA-24-0966 TCGA-24-0968 TCGA-24-1424 
        4.27        58.13         4.70         7.63        19.63         6.02 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1470 TCGA-24-1544 TCGA-24-1549 TCGA-24-1560 
       72.92        12.46         3.42        26.96        56.58        44.09 
TCGA-24-1565 TCGA-24-1846 TCGA-24-2019 TCGA-24-2024 TCGA-24-2026 TCGA-24-2260 
       10.26         4.37         4.87        58.16        34.82        36.16 
TCGA-24-2288 TCGA-24-2290 TCGA-24-2298 TCGA-25-1313 TCGA-25-1315 TCGA-25-1316 
        0.82        36.23        53.26        26.93        51.06        37.02 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 
       56.94        60.59        35.54        51.22        14.93        24.99 
TCGA-25-1878 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2404 TCGA-25-2409 
       85.05         1.02        38.04         3.02        29.00        26.96 
TCGA-29-1691 TCGA-29-1696 TCGA-29-1697 TCGA-29-1699 TCGA-29-1701 TCGA-29-1705 
       47.18        33.70        31.17         0.53        16.90        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1761 TCGA-29-1763 TCGA-29-1769 TCGA-29-1771 
       41.95        29.23        17.00        66.77        22.98        22.52 
TCGA-29-1774 TCGA-29-2427 TCGA-29-2428 TCGA-30-1853 TCGA-30-1861 TCGA-30-1866 
       17.29        62.47        45.11        36.26        34.78        36.62 
TCGA-30-1891 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 
       30.05         6.71        42.51        44.09         2.17        28.73 
TCGA-36-1575 TCGA-36-1581 TCGA-36-2530 TCGA-36-2537 TCGA-36-2538 TCGA-36-2551 
        8.55        24.69        33.01        25.91        25.08        16.14 
TCGA-57-1584 TCGA-59-2372 TCGA-61-1733 TCGA-61-1740 TCGA-61-1903 TCGA-61-1907 
       21.14        44.78        31.76         2.43        13.02        31.30 
TCGA-61-1915 TCGA-61-1917 TCGA-61-2002 TCGA-61-2012 TCGA-61-2017 TCGA-61-2102 
       67.73        43.43        17.98        30.64        45.96         6.48 
TCGA-61-2614 
        8.58 

$`19P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1346 TCGA-04-1348 TCGA-04-1351 TCGA-04-1361 TCGA-04-1514 
       18.51        65.49        48.76        65.46        32.52        56.55 
TCGA-04-1516 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1648 
       41.59        38.37       119.08        29.06        84.20        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-09-0364 TCGA-09-0365 TCGA-09-0367 
       64.64        36.23        31.86        29.16         9.47        17.95 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       89.33        74.89        41.59        57.57        61.87        55.36 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
       30.48        17.98         8.55        97.55         6.15         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2050 TCGA-09-2054 TCGA-10-0925 TCGA-10-0926 
       35.15         4.50        71.11        20.91        54.31        25.91 
TCGA-10-0927 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 
       81.47        33.24        32.28        11.70         3.88        35.41 
TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 
       19.86         6.21        24.59        44.55         2.73        12.39 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 
       31.07        15.19         2.47        11.18        11.38        11.54 
TCGA-13-0761 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       34.06        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 
       28.70        30.35        19.56         8.71         7.79         8.28 
TCGA-13-0802 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 
        8.19        35.28        35.28        13.61        68.91       107.18 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
       66.64        70.39        61.81        67.99        69.01        43.36 
TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 
       57.47        57.07        19.36        47.38        48.33        47.84 
TCGA-13-0906 TCGA-13-0910 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0920 
       44.94        37.08        34.06        29.98        21.14        13.81 
TCGA-13-0923 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1477 
        6.41         6.05         5.92         6.84         4.70        54.61 
TCGA-13-1481 TCGA-13-1482 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
       87.06        61.71        98.04        20.68        22.39        70.82 
TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 TCGA-13-1499 TCGA-13-1500 
       52.44        38.17        49.22        54.31        38.37        13.97 
TCGA-13-1501 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 
       32.84         4.21         4.41         4.77         4.14         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 
        3.88         3.09        14.24        12.23        10.78         8.75 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 
        6.28        23.05        25.94        26.20        72.20        27.48 
TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
       25.38        19.07        16.67         2.93         2.66        47.54 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1028 TCGA-23-1029 
       42.51        40.54        15.39        26.83        49.41         8.81 
TCGA-23-1031 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 
       18.87        51.35        54.51         3.22        31.20        68.68 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 
        4.57        33.30        86.01         6.38        39.09        33.47 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
        0.53        24.95       115.89        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2645 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 
       49.84         2.76         4.50        11.64        21.80        41.56 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
        7.66        22.32        54.08        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 
        6.38         7.82         7.99         7.86         0.76         6.25 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 
        5.95         5.36         4.80        17.36        28.34        19.17 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 
       18.67        43.53         8.55        45.14       105.99         9.11 
TCGA-24-1471 TCGA-24-1474 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1550 
        1.18        22.19        57.37        64.27        16.21        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       51.91        41.39        58.09        88.50        70.62        39.88 
TCGA-24-1558 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1567 TCGA-24-1603 
       19.53        45.50        47.70        25.87        17.23        90.15 
TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 
       88.34        48.33        38.24         8.32         3.48         3.72 
TCGA-24-1845 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
        3.81        11.28         5.75         5.49         9.80        22.65 
TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2020 TCGA-24-2023 
       30.21        16.41        11.05        81.11       151.99        44.84 
TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 
      109.68        14.43        53.95        18.48        28.18        64.01 
TCGA-24-2038 TCGA-24-2254 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       44.48        57.07         0.79         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2289 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
       70.45        44.58        67.36        16.64        33.11        55.86 
TCGA-25-1312 TCGA-25-1314 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 
        1.02        31.99         1.02        34.98        65.00        36.95 
TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 
       33.96         2.99        12.00         2.96        18.58        18.02 
TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1877 
       15.78         0.36        20.58         7.86         0.30        18.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
       13.02        49.05        12.00        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2408 TCGA-29-1688 TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 
        2.96        30.97        78.87        44.71       101.75        38.53 
TCGA-29-1695 TCGA-29-1698 TCGA-29-1702 TCGA-29-1703 TCGA-29-1711 TCGA-29-1762 
        0.79        68.28        18.64        59.67        34.62        85.68 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1770 TCGA-29-1775 TCGA-29-1776 
       62.93        39.09        31.23        24.36        12.36        11.84 
TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 
       12.30        14.93         8.35         7.20         5.36        34.62 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 
       86.17        65.00         4.87        42.25        11.84        11.47 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 
        9.76        38.07        51.91         2.47        15.68         0.26 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1862 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       48.07        44.91         6.08         1.18        57.57        24.26 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-36-1569 
       48.79        45.57        30.18        18.77        22.45        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       21.53        22.85        22.55        30.05        25.74        27.85 
TCGA-36-1580 TCGA-36-2529 TCGA-36-2532 TCGA-36-2534 TCGA-36-2540 TCGA-36-2542 
       24.23        35.05        29.49        29.79        23.80        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 
        2.24        20.98        18.31        20.52        14.17         6.05 
TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       11.47        14.30         9.07         9.44         7.56         7.46 
TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1585 TCGA-57-1586 
        7.63         1.48        24.03        11.38         1.74        22.32 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 
       28.96        25.05        25.02       180.16        80.12        22.32 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 
      116.12         9.40        34.39         2.14         5.39        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 
        8.05        20.94        31.40        18.54        27.88         4.34 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1741 TCGA-61-1743 
       28.47        48.79        44.84        35.80        33.67        43.69 
TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1904 TCGA-61-1906 
        1.41         8.42         5.79        11.41         9.07        34.13 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1918 TCGA-61-1919 
       37.02        42.48        48.92        56.58        15.75        38.17 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 
        1.97         5.52        14.50         3.98        30.61        39.85 
TCGA-61-2016 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
        1.18        45.40         4.80         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2104 
       61.64        58.39        60.62        65.49        55.50        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 
       20.68        44.52       125.72        22.22         6.35        31.07 

      19P LOSS CNV 19P LOSS WILD-TYPE 
              0.53               0.26 
      19P LOSS CNV 19P LOSS WILD-TYPE 
            129.96             180.16 
      19P LOSS CNV 19P LOSS WILD-TYPE 
             30.05              26.07 
[1] "0.5 - 130.0 (30.1)" "0.3 - 180.2 (26.1)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
      "19P LOSS CNV"       "19P LOSS CNV"       "19P LOSS CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
      "19P LOSS CNV"       "19P LOSS CNV"       "19P LOSS CNV" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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      "19P LOSS CNV"       "19P LOSS CNV"       "19P LOSS CNV" 
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      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV"       "19P LOSS CNV"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV"       "19P LOSS CNV"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV"       "19P LOSS CNV"       "19P LOSS CNV" 
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      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV"       "19P LOSS CNV"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV"       "19P LOSS CNV"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV"       "19P LOSS CNV"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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      "19P LOSS CNV"       "19P LOSS CNV"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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      "19P LOSS CNV"       "19P LOSS CNV"       "19P LOSS CNV" 
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      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV"       "19P LOSS CNV"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV"       "19P LOSS CNV"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2614 
      "19P LOSS CNV" 
[1] "hr=" "1"  
D74V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  19P LOSS CNV             1   139                0
  19P LOSS WILD-TYPE       1   409                2
D74V3, multiclass
                  clus
vv                 19P LOSS CNV 19P LOSS WILD-TYPE
  OMENTUM                     1                  1
  OVARY                     139                409
  PERITONEUM OVARY            0                  2
D74V4, continuous
                    vv
clus                 I+II III IV
  19P LOSS CNV          0  36  7
  19P LOSS WILD-TYPE    4  97 27
D74V5, multiclass
      clus
vv     19P LOSS CNV 19P LOSS WILD-TYPE
  I+II            0                  4
  III            36                 97
  IV              7                 27
D74V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS CNV          1  142
  19P LOSS WILD-TYPE    2  417
     clus
vv    19P LOSS CNV 19P LOSS WILD-TYPE
  NO             1                  2
  YES          142                417
                    vv
clus                 R0 R1 R2
  19P LOSS CNV        1  9  0
  19P LOSS WILD-TYPE 13 17  2
D74V7, multiclass
    clus
vv   19P LOSS CNV 19P LOSS WILD-TYPE
  R0            1                 13
  R1            9                 17
  R2            0                  2

Clustering(75) Variable = 19q loss
D75V1, survival
                    sevent
clus2                  0   1
  19Q LOSS CNV        67  72
  19Q LOSS WILD-TYPE 196 212
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
               139                408 
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
                72                212 
$`19Q LOSS CNV`
TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       21.57        63.98        49.28        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1654 
       71.47        82.36        55.40        48.89        27.88        47.70 
TCGA-04-1655 TCGA-09-0366 TCGA-09-1659 TCGA-09-1661 TCGA-09-1664 TCGA-09-1667 
       45.34        57.73         9.96        38.43        74.89        61.87 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 TCGA-09-2049 TCGA-09-2051 TCGA-09-2053 
        5.85         3.02        97.55       112.37        63.09        39.75 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0928 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 
       26.93        12.46        18.48        35.80        15.12        19.86 
TCGA-13-0723 TCGA-13-0751 TCGA-13-0762 TCGA-13-0800 TCGA-13-0803 TCGA-13-0804 
       39.58        55.17        32.25         8.12        43.82        35.28 
TCGA-13-0886 TCGA-13-0899 TCGA-13-0908 TCGA-13-0911 TCGA-13-0919 TCGA-13-0921 
       74.27        56.15        44.84        27.68        14.89         4.64 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1411 TCGA-13-1412 TCGA-13-1489 
       10.88         6.61         7.36         4.21         5.33        82.88 
TCGA-13-1494 TCGA-13-1496 TCGA-13-1498 TCGA-13-1510 TCGA-13-2060 TCGA-23-1021 
       38.17         4.24        37.61         2.56         8.58        47.54 
TCGA-23-1024 TCGA-23-1030 TCGA-23-1032 TCGA-23-1119 TCGA-23-1120 TCGA-23-1123 
       15.39        29.10         2.24       129.96         4.27        33.47 
TCGA-23-1124 TCGA-23-2643 TCGA-24-0966 TCGA-24-0968 TCGA-24-0979 TCGA-24-0980 
       58.13         4.70         7.63        19.63        41.56         7.66 
TCGA-24-0982 TCGA-24-1413 TCGA-24-1424 TCGA-24-1463 TCGA-24-1464 TCGA-24-1467 
       22.32         6.31         6.02        72.92        12.46       105.99 
TCGA-24-1470 TCGA-24-1549 TCGA-24-1560 TCGA-24-1565 TCGA-24-1846 TCGA-24-2019 
        3.42        56.58        44.09        10.26         4.37         4.87 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2260 TCGA-24-2290 TCGA-24-2298 TCGA-25-1315 
       58.16        34.82        36.16        36.23        53.26        51.06 
TCGA-25-1316 TCGA-25-1628 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 
       37.02        20.58        56.94        60.59        35.54        51.22 
TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 
       14.93        24.99        85.05         1.02        38.04         3.02 
TCGA-25-2399 TCGA-25-2409 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1699 
       19.99        26.96        38.53        33.70        31.17         0.53 
TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1763 TCGA-29-1769 TCGA-29-1771 
       18.25        41.95        29.23        66.77        22.98        22.52 
TCGA-29-1778 TCGA-29-2427 TCGA-30-1853 TCGA-30-1861 TCGA-30-1866 TCGA-30-1891 
       14.93        62.47        36.26        34.78        36.62        30.05 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1575 TCGA-36-1580 
        6.71        42.51        44.09        28.73         8.55        24.23 
TCGA-36-1581 TCGA-36-2530 TCGA-36-2537 TCGA-36-2538 TCGA-36-2551 TCGA-57-1584 
       24.69        33.01        25.91        25.08        16.14        21.14 
TCGA-59-2372 TCGA-61-1725 TCGA-61-1733 TCGA-61-1903 TCGA-61-1907 TCGA-61-1915 
       44.78        31.40        31.76        13.02        31.30        67.73 
TCGA-61-1917 TCGA-61-2002 TCGA-61-2017 TCGA-61-2087 TCGA-61-2088 TCGA-61-2102 
       43.43        17.98        45.96         4.80         4.77         6.48 
TCGA-61-2614 
        8.58 

$`19Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1351 
       18.51        11.87        65.49        63.06        48.76        65.46 
TCGA-04-1361 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       32.52        56.55        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 
       29.06        84.20        28.64        64.64        36.23        31.86 
TCGA-09-0364 TCGA-09-0365 TCGA-09-0367 TCGA-09-0369 TCGA-09-1662 TCGA-09-1665 
       29.16         9.47        17.95        35.54        89.33        41.59 
TCGA-09-1666 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1674 TCGA-09-2043 
       57.57        55.36        30.48        17.98         8.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2050 TCGA-09-2054 TCGA-10-0925 
        6.12        35.15         4.50        71.11        20.91        54.31 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       25.91        81.47        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 
       35.41         6.21        24.59        44.55         2.73        12.39 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       31.07        15.19        17.79         2.47        11.18        11.38 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       11.54        34.06        31.04        21.40         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       36.72        28.70        30.35        19.56         8.71         7.79 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 
        8.28         8.19        35.28        13.61        68.91       107.18 
TCGA-13-0885 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
       91.40        66.64        70.39        61.81        67.99        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 
       43.36        57.47        57.07        19.36        47.38        48.33 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0910 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       47.84        44.94        37.08        34.06        29.98        21.14 
TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 
       13.81         6.41         6.08         6.05         5.92         6.84 
TCGA-13-1410 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 
        4.70        54.61        87.06        61.71        29.39        98.04 
TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 TCGA-13-1495 
       20.68        22.39        70.82        52.44        73.55        49.22 
TCGA-13-1497 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       54.31        38.37        13.97        32.84        16.57         4.21 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 
        4.41         4.77         4.14         3.88         3.09        14.24 
TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 
       12.23        10.78         8.75         6.28        23.05        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 
       26.20        72.20        27.48        25.38        19.07        16.67 
TCGA-20-1686 TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 
        2.93         2.66        42.51        40.54        26.83        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1031 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 
       49.41         8.81        18.87        51.35        54.51         3.22 
TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1121 
       31.20        68.68         4.57        33.30        86.01         6.38 
TCGA-23-1122 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 
       39.09         0.53        24.95       115.89        87.48        91.66 
TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2645 TCGA-24-0970 TCGA-24-0975 
       77.00        49.84         2.76         4.50        11.64        21.80 
TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       54.08        63.55        47.41         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 
        7.86         0.76         6.25         5.95         5.36         4.80 
TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 
       17.36        28.34        19.17        18.67        43.53         8.55 
TCGA-24-1466 TCGA-24-1469 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 
       45.14         9.11         1.18        22.19        26.96        57.37 
TCGA-24-1546 TCGA-24-1548 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 
       64.27        16.21        41.06        51.91        41.39        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1562 TCGA-24-1563 
       88.50        70.62        39.88        19.53        45.50        47.70 
TCGA-24-1564 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 
       25.87        17.23        90.15        88.34        48.33        38.24 
TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1847 TCGA-24-1849 
        8.32         3.48         3.72         3.81        11.28         5.75 
TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 
        5.49         9.80        22.65        30.21        16.41        11.05 
TCGA-24-1930 TCGA-24-2020 TCGA-24-2023 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
       81.11       151.99        44.84       109.68        14.43        53.95 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2261 
       18.48        28.18        64.01        44.48        57.07         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
        0.36        47.54        31.63        70.45        44.58         0.82 
TCGA-24-2289 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-25-1312 TCGA-25-1313 
       67.36        16.64        33.11        55.86         1.02        26.93 
TCGA-25-1314 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       31.99         1.02        34.98        65.00        36.95        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
        2.99        12.00         2.96        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1630 TCGA-25-1631 TCGA-25-1877 TCGA-25-2042 TCGA-25-2391 
        0.36         7.86         0.30        18.05        13.02        49.05 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
       12.00        45.01        42.02         2.96        29.00        30.97 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1695 TCGA-29-1698 
       78.87        44.71        47.18       101.75         0.79        68.28 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 
       16.90        18.64        59.67        34.62        17.00        85.68 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1770 TCGA-29-1774 TCGA-29-1775 
       62.93        39.09        31.23        24.36        17.29        12.36 
TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 
       11.84        12.30         8.35         7.20         5.36        34.62 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
       86.17        65.00        45.11         4.87        42.25        11.84 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 
       11.47         9.76        38.07        51.91         2.47        15.68 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1862 TCGA-30-1867 TCGA-30-1880 
        0.26        48.07        44.91         6.08         1.18        57.57 
TCGA-30-1887 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       24.26        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1959 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 
        2.17        29.06        21.53        22.85        22.55        30.05 
TCGA-36-1577 TCGA-36-1578 TCGA-36-2529 TCGA-36-2532 TCGA-36-2534 TCGA-36-2540 
       25.74        27.85        35.05        29.49        29.79        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 
       21.60         2.24        20.98        18.31        20.52        14.17 
TCGA-36-2549 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 
        6.05        11.47        14.30         9.07         9.44         7.56 
TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1585 
        7.46         7.63         1.48        24.03        11.38         1.74 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       22.32        28.96        25.05        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       22.32       116.12         9.40        34.39         2.14         5.39 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 
       11.11         8.05        20.94        18.54        27.88         4.34 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       28.47        48.79        44.84        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1904 
       43.69         1.41         8.42         5.79        11.41         9.07 
TCGA-61-1906 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1918 
       34.13        37.02        42.48        48.92        56.58        15.75 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2003 TCGA-61-2008 
       38.17         1.97         5.52        14.50         3.98        30.61 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2018 TCGA-61-2092 TCGA-61-2094 
       39.85        30.64         1.18        45.40        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2104 
       61.64        58.39        60.62        65.49        55.50        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 
       20.68        44.52       125.72        22.22         6.35        31.07 

      19Q LOSS CNV 19Q LOSS WILD-TYPE 
              0.53               0.26 
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
            129.96             180.16 
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
            31.400             26.515 
[1] "0.5 - 130.0 (31.4)" "0.3 - 180.2 (26.5)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV"       "19Q LOSS CNV" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
      "19Q LOSS CNV"       "19Q LOSS CNV"       "19Q LOSS CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV"       "19Q LOSS CNV" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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      "19Q LOSS CNV" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
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      "19Q LOSS CNV" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
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      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE"       "19Q LOSS CNV"       "19Q LOSS CNV" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
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"19Q LOSS WILD-TYPE"       "19Q LOSS CNV"       "19Q LOSS CNV" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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      "19Q LOSS CNV" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
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      "19Q LOSS CNV" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
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      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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      "19Q LOSS CNV"       "19Q LOSS CNV"       "19Q LOSS CNV" 
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      "19Q LOSS CNV" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
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      "19Q LOSS CNV" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
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      "19Q LOSS CNV"       "19Q LOSS CNV"       "19Q LOSS CNV" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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      "19Q LOSS CNV" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
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      "19Q LOSS CNV" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
      "19Q LOSS CNV"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
      "19Q LOSS CNV"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
      "19Q LOSS CNV"       "19Q LOSS CNV"       "19Q LOSS CNV" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "19Q LOSS CNV"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
      "19Q LOSS CNV"       "19Q LOSS CNV"       "19Q LOSS CNV" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
      "19Q LOSS CNV"       "19Q LOSS CNV"       "19Q LOSS CNV" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
      "19Q LOSS CNV"       "19Q LOSS CNV"       "19Q LOSS CNV" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV"       "19Q LOSS CNV" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV"       "19Q LOSS CNV" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV"       "19Q LOSS CNV" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV"       "19Q LOSS CNV" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-2614 
      "19Q LOSS CNV" 
[1] "hr=" "1"  
D75V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  19Q LOSS CNV             1   139                0
  19Q LOSS WILD-TYPE       1   409                2
D75V3, multiclass
                  clus
vv                 19Q LOSS CNV 19Q LOSS WILD-TYPE
  OMENTUM                     1                  1
  OVARY                     139                409
  PERITONEUM OVARY            0                  2
D75V4, continuous
                    vv
clus                 I+II III IV
  19Q LOSS CNV          0  37  7
  19Q LOSS WILD-TYPE    4  96 27
D75V5, multiclass
      clus
vv     19Q LOSS CNV 19Q LOSS WILD-TYPE
  I+II            0                  4
  III            37                 96
  IV              7                 27
D75V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS CNV          0  143
  19Q LOSS WILD-TYPE    3  416
     clus
vv    19Q LOSS CNV 19Q LOSS WILD-TYPE
  NO             0                  3
  YES          143                416
                    vv
clus                 R0 R1 R2
  19Q LOSS CNV        1  8  0
  19Q LOSS WILD-TYPE 13 18  2
D75V7, multiclass
    clus
vv   19Q LOSS CNV 19Q LOSS WILD-TYPE
  R0            1                 13
  R1            8                 18
  R2            0                  2

Clustering(76) Variable = 20p loss
D76V1, survival
                    sevent
clus2                  0   1
  20P LOSS CNV        24  12
  20P LOSS WILD-TYPE 239 272
      20P LOSS CNV 20P LOSS WILD-TYPE 
                36                511 
      20P LOSS CNV 20P LOSS WILD-TYPE 
                12                272 
$`20P LOSS CNV`
TCGA-04-1336 TCGA-04-1536 TCGA-09-2048 TCGA-10-0930 TCGA-13-0804 TCGA-13-0893 
       49.15        29.06         4.50        33.24        35.28        43.36 
TCGA-13-0921 TCGA-13-1489 TCGA-13-1494 TCGA-13-1495 TCGA-13-2071 TCGA-20-1682 
        4.64        82.88        38.17        49.22         6.28        27.48 
TCGA-20-1687 TCGA-23-1022 TCGA-23-1028 TCGA-23-1118 TCGA-23-1119 TCGA-24-0975 
        2.66        42.51        49.41        86.01       129.96        21.80 
TCGA-24-1417 TCGA-24-1427 TCGA-24-1428 TCGA-24-1463 TCGA-24-1471 TCGA-24-1552 
        7.82         4.80        17.36        72.92         1.18        41.39 
TCGA-24-1603 TCGA-24-2298 TCGA-25-2392 TCGA-29-1693 TCGA-29-1711 TCGA-29-1781 
       90.15        53.26         1.02       101.75        34.62         8.35 
TCGA-29-2434 TCGA-29-2436 TCGA-36-1577 TCGA-61-1734 TCGA-61-1737 TCGA-61-2088 
       11.47         9.76        25.74        28.47        44.84         4.77 

$`20P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00         1.81         2.01        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       11.87        65.49        63.06        48.76        21.57        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       65.46        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 
       71.47        82.36        56.55        41.59        19.99        38.37 
TCGA-04-1530 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
      119.08        84.20        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       64.64        36.23        31.86        47.70        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
        9.47        57.73        17.95        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       89.33        74.89        41.59        57.57        61.87        55.36 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 
       30.48        17.98         5.85         3.02         8.55        97.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
        6.15         6.12        35.15       112.37        71.11        63.09 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       39.75        20.91        26.93        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 
       81.47        18.48        32.28        11.70         3.88        35.41 
TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 
       35.80        15.12        19.86         6.21        24.59        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       39.58         2.73        12.39        31.07        15.19        17.79 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       55.17         2.47        11.18        11.38        11.54        34.06 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       32.25        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       28.70        30.35        19.56         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.28         8.19        43.82        35.28        13.61        68.91 
TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 
      107.18        91.40        74.27        66.64        70.39        61.81 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       67.99        69.01        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       47.38        48.33        47.84        44.94        44.84        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 
       27.68        34.06        29.98        21.14        14.89        13.81 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
        6.41         6.08        10.88         6.61         7.36         6.05 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 
        5.92         6.84         4.70         4.21         5.33        54.61 
TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 
       87.06        61.71        29.39        98.04        20.68        22.39 
TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 
       70.82        52.44        73.55         4.24        54.31        37.61 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       38.37        13.97        32.84        16.57         4.21         4.41 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 
        4.77         4.14         2.56         3.88         3.09        14.24 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-20-0987 TCGA-20-0990 
       12.23         8.58        10.78         8.75        23.05        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 
       26.20        72.20        25.38        19.07        16.67         2.93 
TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1029 
       47.54        40.54        15.39        26.83        31.73         8.81 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 
       29.10        18.87         2.24        51.35        54.51         3.22 
TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1120 TCGA-23-1121 
       31.20        68.68         4.57        33.30         4.27         6.38 
TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 
       39.09        33.47        58.13         0.53        24.95       115.89 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 
       87.48        91.66        77.00        49.84         2.76         4.70 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0979 TCGA-24-0980 
        4.50         7.63        19.63        11.64        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       22.32        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 
        7.99         7.86         0.76         6.25         6.02         5.95 
TCGA-24-1426 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 
        5.36        28.34        19.17        18.67        43.53         8.55 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 
       12.46        45.14       105.99         9.11         3.42        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 
       26.96        57.37        64.27        16.21        56.58        41.06 
TCGA-24-1551 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 
       51.91        58.09        88.50        70.62        39.88        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 
       88.34        48.33        38.24         8.32         3.48         3.72 
TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.81         4.37        11.28         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 
       22.65        30.21        16.41        11.05        81.11         4.87 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 
      151.99        44.84        58.16        34.82       109.68        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
       53.95        18.48        28.18        64.01        44.48        57.07 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 
       36.16         0.79         0.36        47.54        31.63        70.45 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 
       44.58         0.82        67.36        36.23        16.64        33.11 
TCGA-24-2297 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       55.86         1.02        26.93        31.99        51.06        37.02 
TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 
        1.02        34.98        65.00        36.95        33.96         2.99 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 
       12.00         2.96        18.58        18.02        15.78         0.36 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 
       20.58         7.86         0.30        56.94        60.59        35.54 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
       51.22        14.93        24.99        18.05        85.05        13.02 
TCGA-25-2391 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
       49.05        38.04         3.02        12.00        45.01        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 
       42.02         2.96        29.00        30.97        26.96        78.87 
TCGA-29-1690 TCGA-29-1691 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 
       44.71        47.18        38.53         0.79        33.70        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 
       68.28         0.53        16.90        18.64        59.67        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 
       41.95        29.23        17.00        85.68        66.77        62.93 
TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 
       39.09        31.23        22.98        24.36        22.52        17.29 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1783 TCGA-29-1784 
       12.36        11.84        12.30        14.93         7.20         5.36 
TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
       34.62        86.17        65.00        62.47        45.11         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 
       42.25        11.84        38.07        51.91        36.26         2.47 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 
       15.68         0.26        48.07        44.91        34.78         6.08 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
       36.62         1.18        57.57        24.26        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       45.57        30.18        18.77        22.45         6.71        42.51 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       44.09         2.17        28.73        29.06        21.53        22.85 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 
       22.55         8.55        30.05        27.85        24.23        24.69 
TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       35.05        33.01        29.49        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       23.80        21.60         2.24        20.98        18.31        20.52 
TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 
       14.17         6.05        16.14        11.47        14.30         9.07 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 
        9.44         7.56         7.46         7.63         1.48        24.03 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 
       11.38        21.14         1.74        22.32        28.96        25.05 
TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 
       25.02       180.16        80.12        22.32       116.12         9.40 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 
       34.39         2.14         5.39        44.78        11.11         8.05 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 
       20.94        31.40        18.54        27.88         4.34        31.76 
TCGA-61-1736 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 
       48.79        35.80         2.43        33.67        43.69         1.41 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
        8.42         5.79        11.41        13.02         9.07        34.13 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 
       31.30        37.02        42.48        48.92        56.58        67.73 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       43.43        15.75        38.17         1.97         5.52        14.50 
TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 
       17.98         3.98        30.61        39.85        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.96        45.40         4.80        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 
       58.39        60.62        65.49        55.50         6.48        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 
       20.68        44.52       125.72        22.22         6.35        31.07 
TCGA-61-2614 
        8.58 

      20P LOSS CNV 20P LOSS WILD-TYPE 
              1.02               0.26 
      20P LOSS CNV 20P LOSS WILD-TYPE 
            129.96             180.16 
      20P LOSS CNV 20P LOSS WILD-TYPE 
             31.15              27.88 
[1] "1.0 - 130.0 (31.1)" "0.3 - 180.2 (27.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
      "20P LOSS CNV" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"20P LOSS WILD-TYPE"       "20P LOSS CNV"       "20P LOSS CNV" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE"       "20P LOSS CNV"       "20P LOSS CNV" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
      "20P LOSS CNV" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2614 
"20P LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D76V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  20P LOSS CNV             0    36                0
  20P LOSS WILD-TYPE       2   512                2
D76V3, multiclass
                  clus
vv                 20P LOSS CNV 20P LOSS WILD-TYPE
  OMENTUM                     0                  2
  OVARY                      36                512
  PERITONEUM OVARY            0                  2
D76V4, continuous
                    vv
clus                 I+II III  IV
  20P LOSS CNV          0  13   2
  20P LOSS WILD-TYPE    4 120  32
D76V5, multiclass
      clus
vv     20P LOSS CNV 20P LOSS WILD-TYPE
  I+II            0                  4
  III            13                120
  IV              2                 32
D76V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS CNV          1   36
  20P LOSS WILD-TYPE    2  523
     clus
vv    20P LOSS CNV 20P LOSS WILD-TYPE
  NO             1                  2
  YES           36                523
                    vv
clus                 R0 R1 R2
  20P LOSS CNV        2  0  0
  20P LOSS WILD-TYPE 12 26  2
D76V7, multiclass
[1] "Remove cluster labels:" "20P LOSS CNV"          
clus
      20P LOSS CNV 20P LOSS WILD-TYPE 
                 2                 40 
        TCGA-04-1516         TCGA-04-1644         TCGA-13-0807 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-24-2033         TCGA-29-2414 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-2425         TCGA-29-2427         TCGA-29-2428 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-2429         TCGA-29-2431         TCGA-29-2432 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-42-2593         TCGA-57-1993         TCGA-59-2363 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-2612         TCGA-61-2613 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2614 
"20P LOSS WILD-TYPE" 

Clustering(77) Variable = 20q loss
D77V1, survival
                    sevent
clus2                  0   1
  20Q LOSS CNV        14   7
  20Q LOSS WILD-TYPE 249 277
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
                21                526 
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
                 7                277 
$`20Q LOSS CNV`
TCGA-04-1336 TCGA-09-2048 TCGA-13-0804 TCGA-13-1489 TCGA-13-1494 TCGA-13-1495 
       49.15         4.50        35.28        82.88        38.17        49.22 
TCGA-13-2059 TCGA-23-1028 TCGA-23-1118 TCGA-23-1119 TCGA-23-2072 TCGA-24-1428 
       12.23        49.41        86.01       129.96        24.95        17.36 
TCGA-24-1463 TCGA-24-1471 TCGA-24-1552 TCGA-24-2030 TCGA-24-2298 TCGA-29-1781 
       72.92         1.18        41.39        53.95        53.26         8.35 
TCGA-61-1734 TCGA-61-2002 TCGA-61-2088 
       28.47        17.98         4.77 

$`20Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00         1.81         2.01        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       11.87        65.49        63.06        48.76        21.57        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       65.46        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 
       71.47        82.36        56.55        41.59        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
      119.08        29.06        84.20        55.40        48.89        27.88 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 
       28.64        64.64        36.23        31.86        47.70        45.34 
TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 
       29.16         9.47        57.73        17.95        35.54         9.96 
TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 
       38.43        89.33        74.89        41.59        57.57        61.87 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 
       55.36        30.48        17.98         5.85         3.02         8.55 
TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2049 TCGA-09-2050 
       97.55         6.15         6.12        35.15       112.37        71.11 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       63.09        39.75        20.91        26.93        12.46        54.31 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 
       25.91        81.47        18.48        33.24        32.28        11.70 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 
        3.88        35.41        35.80        15.12        19.86         6.21 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 
       24.59        44.55        39.58         2.73        12.39        31.07 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       15.19        17.79        55.17         2.47        11.18        11.38 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.54        34.06        32.25        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 
       38.93        36.72        28.70        30.35        19.56         8.71 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0805 
        7.79         8.12         8.28         8.19        43.82        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       13.61        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 
       70.39        61.81        67.99        69.01        43.36        57.47 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 
       56.15        57.07        19.36        47.38        48.33        47.84 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 
       44.94        44.84        37.08        27.68        34.06        29.98 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 
       21.14        14.89        13.81         4.64         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 
       10.88         6.61         7.36         6.05         5.92         6.84 
TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
        4.70         4.21         5.33        54.61        87.06        61.71 
TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 
       29.39        98.04        20.68        22.39        70.82        52.44 
TCGA-13-1492 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       73.55         4.24        54.31        37.61        38.37        13.97 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       32.84        16.57         4.21         4.41         4.77         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 
        2.56         3.88         3.09        14.24         8.58        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       27.48        25.38        19.07        16.67         2.93         2.66 
TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
       47.54        42.51        40.54        15.39        26.83        31.73 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1120 
        3.22        31.20        68.68         4.57        33.30         4.27 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 
        6.38        39.09        33.47        58.13         0.53       115.89 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 
       87.48        91.66        77.00        49.84         2.76         4.70 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 
        4.50         7.63        19.63        11.64        21.80        41.56 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
        7.66        22.32        54.08        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 
        6.38         7.82         7.99         7.86         0.76         6.25 
TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1430 TCGA-24-1431 
        6.02         5.95         5.36         4.80        28.34        19.17 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 
       18.67        43.53         8.55        12.46        45.14       105.99 
TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
        9.11         3.42        22.19        26.96        57.37        64.27 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1553 TCGA-24-1555 
       16.21        56.58        41.06        51.91        58.09        88.50 
TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 
       70.62        39.88        19.53        44.09        45.50        47.70 
TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 
       25.87        10.26        17.23        90.15        88.34        48.33 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 
       38.24         8.32         3.48         3.72         3.81         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 
       11.28         5.75         5.49         9.80        22.65        30.21 
TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 
       16.41        11.05        81.11         4.87       151.99        44.84 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2033 TCGA-24-2035 
       58.16        34.82       109.68        14.43        18.48        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 
       64.01        44.48        57.07        36.16         0.79         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
       47.54        31.63        70.45        44.58         0.82        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-25-1312 TCGA-25-1313 
       36.23        16.64        33.11        55.86         1.02        26.93 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 
       31.99        51.06        37.02         1.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 
       36.95        33.96         2.99        12.00         2.96        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 
       18.02        15.78         0.36        20.58         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 
       56.94        60.59        35.54        51.22        14.93        24.99 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 
       18.05        85.05        13.02        49.05         1.02        38.04 
TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 
        3.02        12.00        45.01        19.99        42.02         2.96 
TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 
       29.00        30.97        26.96        78.87        44.71        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 
      101.75        38.53         0.79        33.70        31.17        68.28 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
        0.53        16.90        18.64        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 
       29.23        34.62        17.00        85.68        66.77        62.93 
TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 
       39.09        31.23        22.98        24.36        22.52        17.29 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1783 TCGA-29-1784 
       12.36        11.84        12.30        14.93         7.20         5.36 
TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
       34.62        86.17        65.00        62.47        45.11         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
       42.25        11.84        11.47         9.76        38.07        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 
       36.26         2.47        15.68         0.26        48.07        44.91 
TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       34.78         6.08        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 
        6.71        42.51        44.09         2.17        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 
       21.53        22.85        22.55         8.55        30.05        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
       27.85        24.23        24.69        35.05        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.79        25.91        25.08        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 
       20.98        18.31        20.52        14.17         6.05        16.14 
TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       11.47        14.30         9.07         9.44         7.56         7.46 
TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 
        7.63         1.48        24.03        11.38        21.14         1.74 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       22.32        28.96        25.05        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       22.32       116.12         9.40        34.39         2.14         5.39 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 
       44.78        11.11         8.05        20.94        31.40        18.54 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
       27.88         4.34        31.76        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 
        2.43        33.67        43.69         1.41         8.42         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
       11.41        13.02         9.07        34.13        31.30        37.02 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
       42.48        48.92        56.58        67.73        43.43        15.75 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2003 TCGA-61-2008 
       38.17         1.97         5.52        14.50         3.98        30.61 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
       39.85        30.64         1.18        45.96        45.40         4.80 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 
       51.72        71.74        61.64        58.39        60.62        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
       55.50         6.48        76.83        20.68        44.52       125.72 
TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       22.22         6.35        31.07         8.58 

      20Q LOSS CNV 20Q LOSS WILD-TYPE 
              1.18               0.26 
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
            129.96             180.16 
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
            38.170             27.865 
[1] "1.2 - 130.0 (38.2)" "0.3 - 180.2 (27.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
      "20Q LOSS CNV" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"20Q LOSS WILD-TYPE"       "20Q LOSS CNV" "20Q LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
      "20Q LOSS CNV" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"20Q LOSS WILD-TYPE"       "20Q LOSS CNV" "20Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"20Q LOSS WILD-TYPE"       "20Q LOSS CNV" "20Q LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"20Q LOSS WILD-TYPE"       "20Q LOSS CNV"       "20Q LOSS CNV" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
      "20Q LOSS CNV" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "20Q LOSS CNV" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
      "20Q LOSS CNV" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
      "20Q LOSS CNV" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
      "20Q LOSS CNV" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"20Q LOSS WILD-TYPE"       "20Q LOSS CNV" "20Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
      "20Q LOSS CNV" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
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        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"20Q LOSS WILD-TYPE"       "20Q LOSS CNV"       "20Q LOSS CNV" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
      "20Q LOSS CNV" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "20Q LOSS CNV" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
      "20Q LOSS CNV" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
      "20Q LOSS CNV" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
      "20Q LOSS CNV" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"20Q LOSS WILD-TYPE"       "20Q LOSS CNV" "20Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
      "20Q LOSS CNV" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
      "20Q LOSS CNV" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-2614 
"20Q LOSS WILD-TYPE" 
[1] "hr=" "2.2"
D77V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  20Q LOSS CNV             0    21                0
  20Q LOSS WILD-TYPE       2   527                2
D77V3, multiclass
                  clus
vv                 20Q LOSS CNV 20Q LOSS WILD-TYPE
  OMENTUM                     0                  2
  OVARY                      21                527
  PERITONEUM OVARY            0                  2
D77V4, continuous
                    vv
clus                 I+II III  IV
  20Q LOSS CNV          0   8   1
  20Q LOSS WILD-TYPE    4 125  33
D77V5, multiclass
      clus
vv     20Q LOSS CNV 20Q LOSS WILD-TYPE
  I+II            0                  4
  III             8                125
  IV              1                 33
D77V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS CNV          0   22
  20Q LOSS WILD-TYPE    3  537
     clus
vv    20Q LOSS CNV 20Q LOSS WILD-TYPE
  NO             0                  3
  YES           22                537
                    vv
clus                 R0 R1 R2
  20Q LOSS CNV        0  0  0
  20Q LOSS WILD-TYPE 14 26  2
D77V7, multiclass

Clustering(78) Variable = 21q loss
D78V1, survival
                    sevent
clus2                  0   1
  21Q LOSS CNV        65  80
  21Q LOSS WILD-TYPE 198 204
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
               145                402 
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
                80                204 
$`21Q LOSS CNV`
TCGA-04-1335 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1365 TCGA-04-1638 
        1.81        63.98        65.46        49.28        76.54        55.40 
TCGA-04-1648 TCGA-04-1654 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       28.64        47.70        35.54         9.96        38.43        89.33 
TCGA-09-1669 TCGA-09-1675 TCGA-09-2049 TCGA-09-2051 TCGA-09-2056 TCGA-10-0926 
       30.48        97.55       112.37        63.09        12.46        25.91 
TCGA-10-0927 TCGA-10-0930 TCGA-10-0937 TCGA-13-0723 TCGA-13-0730 TCGA-13-0751 
       81.47        33.24        15.12        39.58        17.79        55.17 
TCGA-13-0758 TCGA-13-0761 TCGA-13-0791 TCGA-13-0792 TCGA-13-0794 TCGA-13-0803 
       11.38        34.06        38.93        36.72        30.35        43.82 
TCGA-13-0883 TCGA-13-0887 TCGA-13-0891 TCGA-13-0899 TCGA-13-0906 TCGA-13-0912 
       68.91        66.64        69.01        56.15        44.94        34.06 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0920 TCGA-13-0921 TCGA-13-1404 TCGA-13-1409 
       29.98        21.14        13.81         4.64         6.61         6.84 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 TCGA-13-1507 
       22.39        70.82        38.17        49.22        54.31         4.77 
TCGA-13-2061 TCGA-20-1682 TCGA-20-1684 TCGA-20-1686 TCGA-20-1687 TCGA-23-1022 
       10.78        27.48        19.07         2.93         2.66        42.51 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1113 TCGA-23-1114 TCGA-23-1124 
       29.10        18.87         2.24        31.20        68.68        58.13 
TCGA-23-2072 TCGA-23-2077 TCGA-24-0968 TCGA-24-0975 TCGA-24-1103 TCGA-24-1105 
       24.95       115.89        19.63        21.80        54.08        47.41 
TCGA-24-1413 TCGA-24-1418 TCGA-24-1422 TCGA-24-1425 TCGA-24-1431 TCGA-24-1434 
        6.31         7.99         0.76         5.95        19.17        18.67 
TCGA-24-1471 TCGA-24-1548 TCGA-24-1557 TCGA-24-1567 TCGA-24-1604 TCGA-24-1614 
        1.18        16.21        39.88        17.23        88.34        48.33 
TCGA-24-1846 TCGA-24-1850 TCGA-24-1920 TCGA-24-1924 TCGA-24-1930 TCGA-24-2023 
        4.37         5.49         9.80        30.21        81.11        44.84 
TCGA-24-2026 TCGA-24-2267 TCGA-24-2298 TCGA-25-1316 TCGA-25-1318 TCGA-25-1320 
       34.82        47.54        53.26        37.02        34.98        36.95 
TCGA-25-1321 TCGA-25-1625 TCGA-25-1630 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 
       33.96        18.02         7.86        56.94        60.59        35.54 
TCGA-25-1635 TCGA-25-1871 TCGA-25-2396 TCGA-29-1691 TCGA-29-1695 TCGA-29-1699 
       51.22        24.99         3.02        47.18         0.79         0.53 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1763 TCGA-29-1769 TCGA-29-1770 TCGA-29-1774 
       34.62        17.00        66.77        22.98        24.36        17.29 
TCGA-29-1775 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 
       12.36         5.36        34.62        86.17        65.00        62.47 
TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1859 TCGA-30-1866 
       38.07        51.91        36.26         2.47        48.07        36.62 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1950 TCGA-31-1956 TCGA-36-1575 TCGA-36-1581 
       30.05        48.79        18.77        44.09         8.55        24.69 
TCGA-36-2530 TCGA-36-2538 TCGA-36-2548 TCGA-42-2593 TCGA-57-1993 TCGA-57-1994 
       33.01        25.08        14.17         1.48        25.05        25.02 
TCGA-59-2348 TCGA-59-2372 TCGA-61-1727 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 
      180.16        44.78        18.54         4.34        31.76        28.47 
TCGA-61-1899 TCGA-61-1913 TCGA-61-1918 TCGA-61-1919 TCGA-61-2008 TCGA-61-2016 
        8.42        48.92        15.75        38.17        30.61         1.18 
TCGA-61-2094 
       71.74 

$`21Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00        49.15         2.01        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1361 
       11.87        65.49        63.06        48.76        21.57        32.52 
TCGA-04-1362 TCGA-04-1364 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 
       44.32        33.67        71.47        82.36        56.55        41.59 
TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1644 
       19.99        38.37       119.08        29.06        84.20        48.89 
TCGA-04-1646 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1655 TCGA-09-0364 
       27.88        64.64        36.23        31.86        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 
        9.47        57.73        17.95        74.89        41.59        57.57 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 
       61.87        55.36        17.98         5.85         3.02         8.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2050 TCGA-09-2053 
        6.15         6.12        35.15         4.50        71.11        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-10-0925 TCGA-10-0928 TCGA-10-0931 TCGA-10-0933 
       20.91        26.93        54.31        18.48        32.28        11.70 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
        3.88        35.41        35.80        19.86         6.21        24.59 
TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0755 
       44.55         2.73        12.39        31.07        15.19         2.47 
TCGA-13-0757 TCGA-13-0760 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.18        11.54        32.25        31.04        21.40         8.42 
TCGA-13-0793 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 
       28.70        19.56         8.71         7.79         8.12         8.28 
TCGA-13-0802 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0884 TCGA-13-0885 
        8.19        35.28        35.28        13.61       107.18        91.40 
TCGA-13-0886 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0893 TCGA-13-0897 
       74.27        70.39        61.81        67.99        43.36        57.47 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0908 
       57.07        19.36        47.38        48.33        47.84        44.84 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0919 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       37.08        27.68        14.89         6.41         6.08        10.88 
TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 
        7.36         6.05         5.92         4.70         4.21         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
       54.61        87.06        61.71        29.39        98.04        20.68 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 
       82.88        52.44        73.55         4.24        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1509 
       13.97        32.84        16.57         4.21         4.41         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 
        2.56         3.88         3.09        14.24        12.23         8.58 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1683 TCGA-20-1685 TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 
       25.38        16.67        47.54        40.54        15.39        26.83 
TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 
       31.73        49.41         8.81        51.35        54.51         3.22 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 
        4.57        33.30        86.01       129.96         4.27         6.38 
TCGA-23-1122 TCGA-23-1123 TCGA-23-1809 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
       39.09        33.47         0.53        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0970 
       49.84         2.76         4.70         4.50         7.63        11.64 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1104 TCGA-24-1416 TCGA-24-1417 
       41.56         7.66        22.32        63.55         6.38         7.82 
TCGA-24-1419 TCGA-24-1423 TCGA-24-1424 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        7.86         6.25         6.02         5.36         4.80        17.36 
TCGA-24-1430 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 
       28.34        43.53         8.55        72.92        12.46        45.14 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 
      105.99         9.11         3.42        22.19        26.96        57.37 
TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 
       64.27        56.58        41.06        51.91        41.39        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 
       88.50        70.62        19.53        44.09        45.50        47.70 
TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       25.87        10.26        90.15        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1847 TCGA-24-1849 TCGA-24-1923 TCGA-24-1927 
        3.72         3.81        11.28         5.75        22.65        16.41 
TCGA-24-1928 TCGA-24-2019 TCGA-24-2020 TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 
       11.05         4.87       151.99        58.16       109.68        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
       53.95        18.48        28.18        64.01        44.48        57.07 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
       36.16         0.79         0.36        31.63        70.45        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
        0.82        67.36        36.23        16.64        33.11        55.86 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1317 TCGA-25-1319 
        1.02        26.93        31.99        51.06         1.02        65.00 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 TCGA-25-1627 
        2.99        12.00         2.96        18.58        15.78         0.36 
TCGA-25-1628 TCGA-25-1631 TCGA-25-1870 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
       20.58         0.30        14.93        18.05        85.05        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
       49.05         1.02        38.04        12.00        45.01        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 
       42.02         2.96        29.00        30.97        26.96        78.87 
TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 
       44.71       101.75        38.53        33.70        31.17        68.28 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       16.90        18.64        59.67        18.25        41.95        29.23 
TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1771 TCGA-29-1776 
       85.68        62.93        39.09        31.23        22.52        11.84 
TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-2428 TCGA-29-2429 
       12.30        14.93         8.35         7.20        45.11         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1856 TCGA-30-1857 
       42.25        11.84        11.47         9.76        15.68         0.26 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       44.91        34.78         6.08         1.18        57.57        24.26 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1959 
       45.57        30.18        22.45         6.71        42.51         2.17 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 
       28.73        29.06        21.53        22.85        22.55        30.05 
TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-2529 TCGA-36-2532 TCGA-36-2534 
       25.74        27.85        24.23        35.05        29.49        29.79 
TCGA-36-2537 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.91        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2547 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 
       20.52         6.05        16.14        11.47        14.30         9.07 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 
        9.44         7.56         7.46         7.63        24.03        11.38 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-59-2349 TCGA-59-2350 
       21.14         1.74        22.32        28.96        80.12        22.32 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 
      116.12         9.40        34.39         2.14         5.39        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1728 TCGA-61-1736 TCGA-61-1737 
        8.05        20.94        31.40        27.88        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1900 
       35.80         2.43        33.67        43.69         1.41         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
       11.41        13.02         9.07        34.13        31.30        37.02 
TCGA-61-1911 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1995 TCGA-61-1998 
       42.48        56.58        67.73        43.43         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2009 TCGA-61-2012 TCGA-61-2017 
       14.50        17.98         3.98        39.85        30.64        45.96 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2095 TCGA-61-2096 
       45.40         4.80         4.77        51.72        61.64        58.39 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 
       60.62        65.49        55.50         6.48        76.83        20.68 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       44.52       125.72        22.22         6.35        31.07         8.58 

      21Q LOSS CNV 21Q LOSS WILD-TYPE 
              0.53               0.26 
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
            180.16             151.99 
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
             31.76              26.07 
[1] "0.5 - 180.2 (31.8)" "0.3 - 152.0 (26.1)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "21Q LOSS CNV"       "21Q LOSS CNV"       "21Q LOSS CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
      "21Q LOSS CNV"       "21Q LOSS CNV"       "21Q LOSS CNV" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
      "21Q LOSS CNV"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV"       "21Q LOSS CNV" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
      "21Q LOSS CNV"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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      "21Q LOSS CNV"       "21Q LOSS CNV"       "21Q LOSS CNV" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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      "21Q LOSS CNV"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
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"21Q LOSS WILD-TYPE"       "21Q LOSS CNV"       "21Q LOSS CNV" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
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      "21Q LOSS CNV"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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      "21Q LOSS CNV"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE"       "21Q LOSS CNV"       "21Q LOSS CNV" 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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      "21Q LOSS CNV"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
      "21Q LOSS CNV"       "21Q LOSS CNV"       "21Q LOSS CNV" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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      "21Q LOSS CNV"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
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      "21Q LOSS CNV"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
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      "21Q LOSS CNV"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
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        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
      "21Q LOSS CNV"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV"       "21Q LOSS CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
      "21Q LOSS CNV"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-2614 
"21Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D78V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  21Q LOSS CNV             0   145                0
  21Q LOSS WILD-TYPE       2   403                2
D78V3, multiclass
                  clus
vv                 21Q LOSS CNV 21Q LOSS WILD-TYPE
  OMENTUM                     0                  2
  OVARY                     145                403
  PERITONEUM OVARY            0                  2
D78V4, continuous
                    vv
clus                 I+II III IV
  21Q LOSS CNV          1  41  9
  21Q LOSS WILD-TYPE    3  92 25
D78V5, multiclass
      clus
vv     21Q LOSS CNV 21Q LOSS WILD-TYPE
  I+II            1                  3
  III            41                 92
  IV              9                 25
D78V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS CNV          1  147
  21Q LOSS WILD-TYPE    2  412
     clus
vv    21Q LOSS CNV 21Q LOSS WILD-TYPE
  NO             1                  2
  YES          147                412
                    vv
clus                 R0 R1 R2
  21Q LOSS CNV        2  6  1
  21Q LOSS WILD-TYPE 12 20  1
D78V7, multiclass
    clus
vv   21Q LOSS CNV 21Q LOSS WILD-TYPE
  R0            2                 12
  R1            6                 20
  R2            1                  1

Clustering(79) Variable = 22q loss
D79V1, survival
                    sevent
clus2                  0   1
  22Q LOSS CNV       173 200
  22Q LOSS WILD-TYPE  90  84
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
               373                174 
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
               200                 84 
$`22Q LOSS CNV`
TCGA-04-1331 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 TCGA-04-1346 
       40.24        49.15         2.01        46.62        18.51        65.49 
TCGA-04-1347 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 
       63.06        21.57        63.98        65.46        49.28        32.52 
TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 
       44.32        76.54        71.47        82.36        56.55        19.99 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
       38.37       119.08        84.20        55.40        48.89        27.88 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       64.64        36.23        31.86        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
       57.73        17.95        35.54        38.43        89.33        74.89 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 
       57.57        61.87        55.36        30.48        17.98         3.02 
TCGA-09-1674 TCGA-09-1675 TCGA-09-2044 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
        8.55        97.55         6.12         4.50       112.37        71.11 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       63.09        39.75        20.91        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0931 TCGA-10-0933 TCGA-10-0937 TCGA-10-0938 
       81.47        18.48        32.28        11.70        15.12        19.86 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 
       24.59        44.55        39.58        12.39        15.19        17.79 
TCGA-13-0751 TCGA-13-0757 TCGA-13-0761 TCGA-13-0766 TCGA-13-0791 TCGA-13-0794 
       55.17        11.18        34.06        21.40        38.93        30.35 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 
        7.79         8.12         8.28         8.19        43.82        35.28 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       35.28        13.61        68.91        91.40        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 TCGA-13-0900 
       70.39        61.81        67.99        69.01        57.47        57.07 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       19.36        47.38        48.33        44.94        44.84        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0921 
       27.68        34.06        29.98        21.14        14.89         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1404 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 
        6.41         6.08         6.61         6.05         5.92         6.84 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1487 
        4.21         5.33        87.06        61.71        29.39        22.39 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 
       82.88        52.44        73.55        38.17        49.22         4.24 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1500 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       54.31        37.61        13.97        16.57         4.21         4.41 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 
        4.77         4.14         3.09        14.24        12.23         8.58 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0990 TCGA-20-0991 TCGA-20-1682 TCGA-20-1683 
        8.75         6.28        25.94        26.20        27.48        25.38 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1024 
       19.07        16.67         2.66        47.54        42.51        15.39 
TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       31.73        49.41         8.81        29.10        18.87         2.24 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 TCGA-23-1117 TCGA-23-1122 
       51.35        54.51        31.20        68.68        33.30        39.09 
TCGA-23-2072 TCGA-23-2078 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 
       24.95        87.48        77.00        49.84         2.76         4.70 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0982 
        4.50         7.63        11.64        21.80        41.56        22.32 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       63.55        47.41         6.31         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 
        7.86         0.76         6.25         6.02         5.95         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1464 
        4.80        17.36        19.17        18.67        43.53        12.46 
TCGA-24-1466 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1548 
       45.14         1.18        22.19        26.96        57.37        16.21 
TCGA-24-1549 TCGA-24-1550 TCGA-24-1552 TCGA-24-1555 TCGA-24-1557 TCGA-24-1560 
       56.58        41.06        41.39        88.50        39.88        44.09 
TCGA-24-1562 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 
       45.50        10.26        17.23        90.15        88.34        48.33 
TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 TCGA-24-1850 TCGA-24-1920 
       38.24         3.48         3.72         4.37         5.49         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1930 TCGA-24-2019 TCGA-24-2023 TCGA-24-2026 
       22.65        30.21        81.11         4.87        44.84        34.82 
TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2036 TCGA-24-2254 
      109.68        14.43        53.95        18.48        64.01        57.07 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2288 
       36.16         0.79         0.36        47.54        31.63         0.82 
TCGA-24-2293 TCGA-24-2295 TCGA-24-2298 TCGA-25-1312 TCGA-25-1314 TCGA-25-1315 
       16.64        33.11        53.26         1.02        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       37.02         1.02        34.98        65.00        36.95        33.96 
TCGA-25-1322 TCGA-25-1329 TCGA-25-1623 TCGA-25-1628 TCGA-25-1631 TCGA-25-1632 
        2.99         2.96        18.58        20.58         0.30        56.94 
TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 
       60.59        35.54        51.22        14.93        24.99        85.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
       13.02        49.05        38.04        12.00        45.01        19.99 
TCGA-25-2400 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1693 TCGA-29-1694 
       42.02        29.00        30.97        26.96       101.75        38.53 
TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1701 TCGA-29-1702 
        0.79        33.70        31.17        68.28        16.90        18.64 
TCGA-29-1703 TCGA-29-1707 TCGA-29-1711 TCGA-29-1761 TCGA-29-1763 TCGA-29-1766 
       59.67        41.95        34.62        17.00        66.77        39.09 
TCGA-29-1769 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1778 TCGA-29-1783 
       22.98        17.29        12.36        11.84        14.93         7.20 
TCGA-29-1785 TCGA-29-2428 TCGA-30-1714 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 
       34.62        45.11        38.07        36.26         2.47        15.68 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1862 TCGA-30-1866 TCGA-30-1880 TCGA-30-1887 
       48.07        44.91         6.08        36.62        57.57        24.26 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1959 
       48.79        45.57        22.45         6.71        42.51         2.17 
TCGA-36-1568 TCGA-36-1571 TCGA-36-1575 TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 
       28.73        22.85         8.55        25.74        24.23        24.69 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 
       33.01        29.49        29.79        25.08        23.80        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2588 
        2.24        20.98        14.17        16.14        11.47         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 
        7.56         7.46         7.63         1.48        24.03        11.38 
TCGA-57-1584 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2350 
       21.14        28.96        25.05        25.02       180.16        22.32 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1725 
        9.40        34.39         2.14         5.39        44.78        31.40 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1736 TCGA-61-1738 TCGA-61-1740 
       27.88         4.34        31.76        48.79        35.80         2.43 
TCGA-61-1741 TCGA-61-1743 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1906 
       33.67        43.69         8.42         5.79        11.41        34.13 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1913 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
       31.30        37.02        48.92        67.73        43.43        15.75 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2003 TCGA-61-2012 
       38.17         1.97         5.52        14.50         3.98        30.64 
TCGA-61-2016 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2096 TCGA-61-2097 
        1.18        45.40         4.80         4.77        58.39        60.62 
TCGA-61-2098 TCGA-61-2102 TCGA-61-2109 TCGA-61-2110 TCGA-61-2612 TCGA-61-2613 
       65.49         6.48        20.68        44.52         6.35        31.07 
TCGA-61-2614 
        8.58 

$`22Q LOSS WILD-TYPE`
TCGA-04-1332 TCGA-04-1335 TCGA-04-1343 TCGA-04-1348 TCGA-04-1364 TCGA-04-1516 
       41.00         1.81        11.87        48.76        33.67        41.59 
TCGA-04-1536 TCGA-04-1648 TCGA-04-1654 TCGA-09-1659 TCGA-09-1665 TCGA-09-1672 
       29.06        28.64        47.70         9.96        41.59         5.85 
TCGA-09-2043 TCGA-09-2045 TCGA-09-2055 TCGA-10-0930 TCGA-10-0934 TCGA-10-0935 
        6.15        35.15        26.93        33.24         3.88        35.41 
TCGA-10-0936 TCGA-13-0714 TCGA-13-0724 TCGA-13-0726 TCGA-13-0755 TCGA-13-0758 
       35.80         6.21         2.73        31.07         2.47        11.38 
TCGA-13-0760 TCGA-13-0762 TCGA-13-0764 TCGA-13-0768 TCGA-13-0792 TCGA-13-0793 
       11.54        32.25        31.04         8.42        36.72        28.70 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0884 TCGA-13-0893 TCGA-13-0899 TCGA-13-0905 
       19.56         8.71       107.18        43.36        56.15        47.84 
TCGA-13-0920 TCGA-13-1403 TCGA-13-1405 TCGA-13-1410 TCGA-13-1477 TCGA-13-1484 
       13.81        10.88         7.36         4.70        54.61        98.04 
TCGA-13-1485 TCGA-13-1488 TCGA-13-1499 TCGA-13-1501 TCGA-13-1510 TCGA-13-1511 
       20.68        70.82        38.37        32.84         2.56         3.88 
TCGA-13-2061 TCGA-20-0987 TCGA-20-0996 TCGA-20-1686 TCGA-23-1023 TCGA-23-1026 
       10.78        23.05        72.20         2.93        40.54        26.83 
TCGA-23-1111 TCGA-23-1116 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 
        3.22         4.57        86.01       129.96         4.27         6.38 
TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2079 TCGA-24-0968 
       33.47        58.13         0.53       115.89        91.66        19.63 
TCGA-24-0980 TCGA-24-1103 TCGA-24-1430 TCGA-24-1436 TCGA-24-1463 TCGA-24-1467 
        7.66        54.08        28.34         8.55        72.92       105.99 
TCGA-24-1469 TCGA-24-1470 TCGA-24-1546 TCGA-24-1551 TCGA-24-1553 TCGA-24-1556 
        9.11         3.42        64.27        51.91        58.09        70.62 
TCGA-24-1558 TCGA-24-1563 TCGA-24-1564 TCGA-24-1842 TCGA-24-1845 TCGA-24-1847 
       19.53        47.70        25.87         8.32         3.81        11.28 
TCGA-24-1849 TCGA-24-1927 TCGA-24-1928 TCGA-24-2020 TCGA-24-2024 TCGA-24-2035 
        5.75        16.41        11.05       151.99        58.16        28.18 
TCGA-24-2038 TCGA-24-2280 TCGA-24-2281 TCGA-24-2289 TCGA-24-2290 TCGA-24-2297 
       44.48        70.45        44.58        67.36        36.23        55.86 
TCGA-25-1313 TCGA-25-1323 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1630 
       26.93        12.00        18.02        15.78         0.36         7.86 
TCGA-25-1877 TCGA-25-2392 TCGA-25-2396 TCGA-25-2401 TCGA-29-1688 TCGA-29-1690 
       18.05         1.02         3.02         2.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1699 TCGA-29-1705 TCGA-29-1710 TCGA-29-1762 TCGA-29-1764 
       47.18         0.53        18.25        29.23        85.68        62.93 
TCGA-29-1768 TCGA-29-1770 TCGA-29-1771 TCGA-29-1777 TCGA-29-1781 TCGA-29-1784 
       31.23        24.36        22.52        12.30         8.35         5.36 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
       86.17        65.00        62.47         4.87        42.25        11.84 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1718 TCGA-30-1857 TCGA-30-1861 TCGA-30-1867 
       11.47         9.76        51.91         0.26        34.78         1.18 
TCGA-30-1891 TCGA-31-1946 TCGA-31-1950 TCGA-31-1956 TCGA-36-1569 TCGA-36-1570 
       30.05        30.18        18.77        44.09        29.06        21.53 
TCGA-36-1574 TCGA-36-1576 TCGA-36-1578 TCGA-36-2529 TCGA-36-2537 TCGA-36-2545 
       22.55        30.05        27.85        35.05        25.91        18.31 
TCGA-36-2547 TCGA-36-2549 TCGA-42-2582 TCGA-42-2587 TCGA-57-1585 TCGA-57-1586 
       20.52         6.05        14.30         9.07         1.74        22.32 
TCGA-59-2349 TCGA-59-2351 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1727 
       80.12       116.12        11.11         8.05        20.94        18.54 
TCGA-61-1734 TCGA-61-1737 TCGA-61-1895 TCGA-61-1903 TCGA-61-1904 TCGA-61-1911 
       28.47        44.84         1.41        13.02         9.07        42.48 
TCGA-61-1914 TCGA-61-2002 TCGA-61-2008 TCGA-61-2009 TCGA-61-2017 TCGA-61-2092 
       56.58        17.98        30.61        39.85        45.96        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2101 TCGA-61-2104 TCGA-61-2111 TCGA-61-2113 
       71.74        61.64        55.50        76.83       125.72        22.22 

      22Q LOSS CNV 22Q LOSS WILD-TYPE 
              0.30               0.26 
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
            180.16             151.99 
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
             28.96              27.39 
[1] "0.3 - 180.2 (29.0)" "0.3 - 152.0 (27.4)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
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"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
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"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
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"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
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      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
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      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-42-2591         TCGA-42-2593         TCGA-57-1582 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2612         TCGA-61-2613 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-61-2614 
      "22Q LOSS CNV" 
[1] "hr=" "1.2"
D79V2, continuous
                    vv
clus                 OMENTUM OVARY PERITONEUM OVARY
  22Q LOSS CNV             1   374                1
  22Q LOSS WILD-TYPE       1   174                1
D79V3, multiclass
                  clus
vv                 22Q LOSS CNV 22Q LOSS WILD-TYPE
  OMENTUM                     1                  1
  OVARY                     374                174
  PERITONEUM OVARY            1                  1
D79V4, continuous
                    vv
clus                 I+II III IV
  22Q LOSS CNV          3  94 26
  22Q LOSS WILD-TYPE    1  39  8
D79V5, multiclass
      clus
vv     22Q LOSS CNV 22Q LOSS WILD-TYPE
  I+II            3                  1
  III            94                 39
  IV             26                  8
D79V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS CNV          3  382
  22Q LOSS WILD-TYPE    0  177
     clus
vv    22Q LOSS CNV 22Q LOSS WILD-TYPE
  NO             3                  0
  YES          382                177
                    vv
clus                 R0 R1 R2
  22Q LOSS CNV        6 18  2
  22Q LOSS WILD-TYPE  8  8  0
D79V7, multiclass
    clus
vv   22Q LOSS CNV 22Q LOSS WILD-TYPE
  R0            6                  8
  R1           18                  8
  R2            2                  0

Clustering(80) Variable = Xq loss
D80V1, survival
                   sevent
clus2                 0   1
  XQ LOSS CNV        51  47
  XQ LOSS WILD-TYPE 212 237
      XQ LOSS CNV XQ LOSS WILD-TYPE 
               98               449 
      XQ LOSS CNV XQ LOSS WILD-TYPE 
               47               237 
$`XQ LOSS CNV`
TCGA-04-1331 TCGA-04-1336 TCGA-04-1347 TCGA-04-1364 TCGA-04-1367 TCGA-04-1638 
       40.24        49.15        63.06        33.67        71.47        55.40 
TCGA-04-1654 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1666 TCGA-09-1667 
       47.70        17.95        35.54         9.96        57.57        61.87 
TCGA-09-1675 TCGA-09-2049 TCGA-09-2056 TCGA-10-0928 TCGA-10-0930 TCGA-10-0937 
       97.55       112.37        12.46        18.48        33.24        15.12 
TCGA-10-0938 TCGA-13-0799 TCGA-13-0801 TCGA-13-0883 TCGA-13-0887 TCGA-13-0891 
       19.86         7.79         8.28        68.91        66.64        69.01 
TCGA-13-0908 TCGA-13-0913 TCGA-13-1405 TCGA-13-1407 TCGA-13-1412 TCGA-13-1483 
       44.84        29.98         7.36         6.05         5.33        29.39 
TCGA-13-1491 TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 TCGA-13-1507 TCGA-13-2061 
       52.44        49.22        54.31        37.61         4.77        10.78 
TCGA-20-1682 TCGA-20-1683 TCGA-23-1022 TCGA-23-1028 TCGA-23-1032 TCGA-23-1113 
       27.48        25.38        42.51        49.41         2.24        31.20 
TCGA-23-1120 TCGA-23-2079 TCGA-23-2081 TCGA-24-0980 TCGA-24-1413 TCGA-24-1419 
        4.27        91.66        77.00         7.66         6.31         7.86 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1427 TCGA-24-1466 TCGA-24-1549 
        6.25         6.02         5.95         4.80        45.14        56.58 
TCGA-24-2023 TCGA-24-2033 TCGA-24-2260 TCGA-24-2262 TCGA-24-2280 TCGA-24-2289 
       44.84        18.48        36.16         0.36        70.45        67.36 
TCGA-24-2290 TCGA-25-1312 TCGA-25-1314 TCGA-25-1315 TCGA-25-1625 TCGA-25-1870 
       36.23         1.02        31.99        51.06        18.02        14.93 
TCGA-25-2392 TCGA-29-1693 TCGA-29-1696 TCGA-29-1697 TCGA-29-1702 TCGA-29-1703 
        1.02       101.75        33.70        31.17        18.64        59.67 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1775 TCGA-29-1777 TCGA-29-1781 TCGA-29-2414 
       17.00        85.68        12.36        12.30         8.35        86.17 
TCGA-30-1853 TCGA-30-1891 TCGA-31-1955 TCGA-31-1956 TCGA-36-1575 TCGA-36-2538 
       36.26        30.05        42.51        44.09         8.55        25.08 
TCGA-42-2582 TCGA-42-2589 TCGA-42-2593 TCGA-57-1585 TCGA-57-1992 TCGA-57-1993 
       14.30         7.56         1.48         1.74        28.96        25.05 
TCGA-57-1994 TCGA-59-2363 TCGA-61-1724 TCGA-61-1733 TCGA-61-1995 TCGA-61-2098 
       25.02         5.39        20.94        31.76         1.97        65.49 
TCGA-61-2104 TCGA-61-2113 
       76.83        22.22 

$`XQ LOSS WILD-TYPE`
TCGA-04-1332 TCGA-04-1335 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 TCGA-04-1343 
       41.00         1.81         2.01        46.62        18.51        11.87 
TCGA-04-1346 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 
       65.49        48.76        21.57        63.98        65.46        49.28 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1365 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 
       32.52        44.32        76.54        82.36        56.55        41.59 
TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1644 
       19.99        38.37       119.08        29.06        84.20        48.89 
TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1655 
       27.88        28.64        64.64        36.23        31.86        45.34 
TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
       29.16         9.47        57.73        38.43        89.33        74.89 
TCGA-09-1665 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       41.59        55.36        30.48        17.98         5.85         3.02 
TCGA-09-1674 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2050 
        8.55         6.15         6.12        35.15         4.50        71.11 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-10-0925 TCGA-10-0926 
       63.09        39.75        20.91        26.93        54.31        25.91 
TCGA-10-0927 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       81.47        32.28        11.70         3.88        35.41        35.80 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
        6.21        24.59        44.55        39.58         2.73        12.39 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 
       31.07        15.19        17.79        55.17         2.47        11.18 
TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 
       11.38        11.54        34.06        32.25        31.04        21.40 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 
        8.42        38.93        36.72        28.70        30.35        19.56 
TCGA-13-0797 TCGA-13-0800 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        8.71         8.12         8.19        43.82        35.28        35.28 
TCGA-13-0807 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0888 TCGA-13-0889 
       13.61       107.18        91.40        74.27        70.39        61.81 
TCGA-13-0890 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       67.99        43.36        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0910 TCGA-13-0911 
       47.38        48.33        47.84        44.94        37.08        27.68 
TCGA-13-0912 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 
       34.06        21.14        14.89        13.81         4.64         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
        6.08        10.88         6.61         5.92         6.84         4.70 
TCGA-13-1411 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1484 TCGA-13-1485 
        4.21        54.61        87.06        61.71        98.04        20.68 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1492 TCGA-13-1494 TCGA-13-1496 
       22.39        70.82        82.88        73.55        38.17         4.24 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       38.37        13.97        32.84        16.57         4.21         4.41 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 
        4.14         2.56         3.88         3.09        14.24        12.23 
TCGA-13-2060 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
        8.58         8.75         6.28        23.05        25.94        26.20 
TCGA-20-0996 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
       72.20        19.07        16.67         2.93         2.66        47.54 
TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1029 TCGA-23-1030 
       40.54        15.39        26.83        31.73         8.81        29.10 
TCGA-23-1031 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1114 TCGA-23-1116 
       18.87        51.35        54.51         3.22        68.68         4.57 
TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 
       33.30        86.01       129.96         6.38        39.09        33.47 
TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2084 
       58.13         0.53        24.95       115.89        87.48        49.84 
TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
        2.76         4.70         4.50         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       21.80        41.56        22.32        54.08        63.55        47.41 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1422 TCGA-24-1426 TCGA-24-1428 
        6.38         7.82         7.99         0.76         5.36        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 
       28.34        19.17        18.67        43.53         8.55        72.92 
TCGA-24-1464 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 
       12.46       105.99         9.11         3.42         1.18        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1550 TCGA-24-1551 
       26.96        57.37        64.27        16.21        41.06        51.91 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 
       41.39        58.09        88.50        70.62        39.88        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       90.15        88.34        48.33        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
        3.72         3.81         4.37        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        9.80        22.65        30.21        16.41        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 
        4.87       151.99        58.16        34.82       109.68        14.43 
TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2261 
       53.95        28.18        64.01        44.48        57.07         0.79 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2281 TCGA-24-2288 TCGA-24-2293 TCGA-24-2295 
       47.54        31.63        44.58         0.82        16.64        33.11 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 
       55.86        53.26        26.93        37.02         1.02        34.98 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 
       65.00        36.95        33.96         2.99        12.00         2.96 
TCGA-25-1623 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 
       18.58        15.78         0.36        20.58         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1871 TCGA-25-1877 
       56.94        60.59        35.54        51.22        24.99        18.05 
TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 
       85.05        13.02        49.05        38.04         3.02        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
       45.01        19.99        42.02         2.96        29.00        30.97 
TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1694 TCGA-29-1695 
       26.96        78.87        44.71        47.18        38.53         0.79 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       68.28         0.53        16.90        18.25        41.95        29.23 
TCGA-29-1711 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       34.62        66.77        62.93        39.09        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 TCGA-29-1778 TCGA-29-1783 
       24.36        22.52        17.29        11.84        14.93         7.20 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
        5.36        34.62        65.00        62.47        45.11         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
       42.25        11.84        11.47         9.76        38.07        51.91 
TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 
        2.47        15.68         0.26        48.07        44.91        34.78 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1892 
        6.08        36.62         1.18        57.57        24.26        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1959 
       45.57        30.18        18.77        22.45         6.71         2.17 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 
       28.73        29.06        21.53        22.85        22.55        30.05 
TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 
       25.74        27.85        24.23        24.69        35.05        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.49        29.79        25.91        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 
       20.98        18.31        20.52        14.17         6.05        16.14 
TCGA-36-2552 TCGA-42-2587 TCGA-42-2588 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 
       11.47         9.07         9.44         7.46         7.63        24.03 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1586 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 
       11.38        21.14        22.32       180.16        80.12        22.32 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2372 TCGA-61-1721 
      116.12         9.40        34.39         2.14        44.78        11.11 
TCGA-61-1722 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1734 
        8.05        31.40        18.54        27.88         4.34        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 
       48.79        44.84        35.80         2.43        33.67        43.69 
TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
        1.41         8.42         5.79        11.41        13.02         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
       34.13        31.30        37.02        42.48        48.92        56.58 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1998 TCGA-61-2000 
       67.73        43.43        15.75        38.17         5.52        14.50 
TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 
       17.98         3.98        30.61        39.85        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
       45.96        45.40         4.80         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2101 TCGA-61-2102 TCGA-61-2109 
       61.64        58.39        60.62        55.50         6.48        20.68 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       44.52       125.72         6.35        31.07         8.58 

      XQ LOSS CNV XQ LOSS WILD-TYPE 
             0.36              0.26 
      XQ LOSS CNV XQ LOSS WILD-TYPE 
           112.37            180.16 
      XQ LOSS CNV XQ LOSS WILD-TYPE 
           29.685            27.880 
[1] "0.4 - 112.4 (29.7)" "0.3 - 180.2 (27.9)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "XQ LOSS CNV"       "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
      "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
      "XQ LOSS CNV"       "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
      "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "XQ LOSS CNV"       "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
      "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
      "XQ LOSS CNV"       "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
      "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
      "XQ LOSS CNV"       "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
      "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
      "XQ LOSS CNV"       "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-42-2593        TCGA-57-1582        TCGA-57-1583 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-57-1584        TCGA-57-1585        TCGA-57-1586        TCGA-57-1992 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-57-1993        TCGA-57-1994        TCGA-59-2348        TCGA-59-2349 
      "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-59-2350        TCGA-59-2351        TCGA-59-2352        TCGA-59-2354 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-59-2355        TCGA-59-2363        TCGA-59-2372        TCGA-61-1721 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1722        TCGA-61-1724        TCGA-61-1725        TCGA-61-1727 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1728        TCGA-61-1730        TCGA-61-1733        TCGA-61-1734 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-61-1736        TCGA-61-1737        TCGA-61-1738        TCGA-61-1740 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1741        TCGA-61-1743        TCGA-61-1895        TCGA-61-1899 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1900        TCGA-61-1901        TCGA-61-1903        TCGA-61-1904 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1906        TCGA-61-1907        TCGA-61-1910        TCGA-61-1911 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1913        TCGA-61-1914        TCGA-61-1915        TCGA-61-1917 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1918        TCGA-61-1919        TCGA-61-1995        TCGA-61-1998 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-61-2000        TCGA-61-2002        TCGA-61-2003        TCGA-61-2008 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-2009        TCGA-61-2012        TCGA-61-2016        TCGA-61-2017 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-2018        TCGA-61-2087        TCGA-61-2088        TCGA-61-2092 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-2094        TCGA-61-2095        TCGA-61-2096        TCGA-61-2097 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-2098        TCGA-61-2101        TCGA-61-2102        TCGA-61-2104 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-61-2109        TCGA-61-2110        TCGA-61-2111        TCGA-61-2113 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D80V2, continuous
                   vv
clus                OMENTUM OVARY PERITONEUM OVARY
  XQ LOSS CNV             1    98                0
  XQ LOSS WILD-TYPE       1   450                2
D80V3, multiclass
                  clus
vv                 XQ LOSS CNV XQ LOSS WILD-TYPE
  OMENTUM                    1                 1
  OVARY                     98               450
  PERITONEUM OVARY           0                 2
D80V4, continuous
                   vv
clus                I+II III  IV
  XQ LOSS CNV          1  33   4
  XQ LOSS WILD-TYPE    3 100  30
D80V5, multiclass
      clus
vv     XQ LOSS CNV XQ LOSS WILD-TYPE
  I+II           1                 3
  III           33               100
  IV             4                30
D80V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS CNV          0  100
  XQ LOSS WILD-TYPE    3  459
     clus
vv    XQ LOSS CNV XQ LOSS WILD-TYPE
  NO            0                 3
  YES         100               459
                   vv
clus                R0 R1 R2
  XQ LOSS CNV        4  3  1
  XQ LOSS WILD-TYPE 10 23  1
D80V7, multiclass
    clus
vv   XQ LOSS CNV XQ LOSS WILD-TYPE
  R0           4                10
  R1           3                23
  R2           1                 1
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
               "PRIMARY.SITE.OF.DISEASE" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                           "TUMOR.STAGE" 
                                      V6 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                      V7 
             "COMPLETENESS.OF.RESECTION" 
> q(save="no")
