ClinicalAnalysisAllGenes_new1 data file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RPPA_preprocess/OV-TP/3353209/0.GDAC_RPPA_preprocess.Finished/OV-TP.rppa.txt |
ClinicalAnalysisAllGenes_new1 clinical file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/OV-TP/3351705/OV-TP.clin.merged.picked.txt |
ClinicalAnalysisAllGenesReport_nozzle2 cutoff p | 1 |
ClinicalAnalysisAllGenesReport_nozzle2 cutoff fdr | 0.05 |
ClinicalAnalysisAllGenesReport_nozzle2 max table rows | 10 |
ClinicalAnalysisAllGenesReport_nozzle2 nozzle ver | Nozzle.R1 |
ClinicalAnalysisAllGenesReport_nozzle2 options | RPPA_EXPR |
Execution Times: | |
Submitted: | 10:47:14 06-06-13 |
Completed: | |
Elapsed: | 00 hrs 06 mins 30 secs |
step 1. ClinicalAnalysisAllGenes_new [id: 416082] Associate individual gene expression profiles to clinical parameters by survival test, t-test, correlation test, or ANOVA test
urn:lsid:broadinstitute.org:cancer.genome.analysis:00333:13
data file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RPPA_preprocess/OV-TP/3353209/0.GDAC_RPPA_preprocess.Finished/OV-TP.rppa.txt |
clinical file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/OV-TP/3351705/OV-TP.clin.merged.picked.txt |
genes filtered by list | |
genes filtered by variance | ALL |
samples filtered by list | |
features used | ALL |
output name | |
job description |
Output Files: | |
OV-TP.clin.merged.picked.clindata.txt | |
OV-TP.rppa.exprdata.gct | |
OV-TP.rppa.analysis.results.RData | |
OV-TP.rppa.clinical.results.txt | |
.lsf.out | |
stdout.txt |
Execution Times: | |
Submitted: | 10:47:37 06-06-13 |
Completed: | 10:50:49 06-06-13 |
Elapsed: | 00 hrs 03 mins 12 secs |
step 2. ClinicalAnalysisAllGenesReport_nozzle [id: 416083] Generate a report to summarize the results from ClinicalAnalysisAllGenes module
urn:lsid:broadinstitute.org:cancer.genome.analysis:00334:29
all result file | OV-TP.rppa.clinical.results.txt |
RData file | OV-TP.rppa.analysis.results.RData |
expression file | OV-TP.rppa.exprdata.gct |
clinical file | OV-TP.clin.merged.picked.clindata.txt |
cutoff p | 1 |
cutoff fdr | 0.05 |
max table rows | 10 |
nozzle ver | Nozzle.R1 |
options | RPPA_EXPR |
report title | |
job description |
Output Files: | |
table1.txt | |
supp.table1.txt | |
table5.txt | |
V2ex.pdf | |
V1ex.pdf | |
V2ex.png | |
V1ex.png | |
table3.txt | |
nozzle.html | |
V6ex.png | |
V6ex.pdf | |
table10.txt | |
.lsf.out | |
nozzle.RData | |
stdout.txt |
Execution Times: | |
Submitted: | 10:47:37 06-06-13 |
Completed: | 10:53:44 06-06-13 |
Elapsed: | 00 hrs 06 mins 06 secs |