getCNExpCorrelation1 reducedseg | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/OV-TP/3471936/all_data_by_genes.txt |
getCNExpCorrelation1 mrnaexp | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/OV-TP/3349505/GDAC_MergeDataFiles_3126537/OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt |
getCNExpCorrelation1 featurename | Hybridization.REF |
getCNExpCorrelation1 threshold | none |
getCNExpCorrelation1 method | pearson |
getCNExpCorrelation1 cortablename | OV-TP |
getCNExpCorrelation1 figurename | OUTPUT |
getCNExpCorrelation1 qatablename | STATS |
writeCorReport2 type | miRNA |
Execution Times: | |
Submitted: | 12:37:09 06-06-13 |
Completed: | |
Elapsed: | 00 hrs 01 mins 30 secs |
step 1. getCNExpCorrelation [id: 417449] Calculates the correlations between the copy number and expression data
urn:lsid:broadinstitute.org:cancer.genome.analysis:00287:20
reducedseg | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/OV-TP/3471936/all_data_by_genes.txt |
mrnaexp | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/OV-TP/3349505/GDAC_MergeDataFiles_3126537/OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt |
featurename | Hybridization.REF |
threshold | none |
method | pearson |
cortablename | OV-TP |
figurename | OUTPUT |
qatablename | STATS |
Output Files: | |
STATS.QA.tsv | |
OUTPUT.CORS.png | |
OV-TP.CORS.tsv | |
.lsf.out | |
stdout.txt |
Execution Times: | |
Submitted: | 12:37:09 06-06-13 |
Completed: | 12:38:19 06-06-13 |
Elapsed: | 00 hrs 01 mins 09 secs |
step 2. writeCorReport [id: 417450] Generates the html report based on the correlation data
urn:lsid:broadinstitute.org:cancer.genome.analysis:00288:42
pngname | OUTPUT.CORS.png |
tablename | OV-TP.CORS.tsv |
type | miRNA |
qatablename | STATS.QA.tsv |
Output Files: | |
nozzle.RData | |
nozzle.html | |
.lsf.out | |
stdout.txt |
Execution Times: | |
Submitted: | 12:37:10 06-06-13 |
Completed: | 12:38:39 06-06-13 |
Elapsed: | 00 hrs 01 mins 29 secs |