PARADIGM pathway analysis of mRNA expression data
Colon Adenocarcinoma (Primary solid tumor)
23 May 2013  |  analyses__2013_05_23
Maintainer Information
Citation Information
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2013): PARADIGM pathway analysis of mRNA expression data. Broad Institute of MIT and Harvard. doi:10.7908/C17D2S5W
- Overview
+ Introduction
- Summary

There were 47 significant pathways identified in this analysis.

Table 1.  Get Full Table Top 10 out of 131 pathways in order of significance.

Pathway.Name Avg.Num.Perturbations
TCGA08_retinoblastoma 98
Syndecan-1-mediated signaling events 66
Signaling events mediated by Stem cell factor receptor (c-Kit) 41
FAS signaling pathway (CD95) 33
BCR signaling pathway 33
HIF-1-alpha transcription factor network 31
Fc-epsilon receptor I signaling in mast cells 31
Glypican 1 network 29
IL23-mediated signaling events 29
FOXM1 transcription factor network 29
- Results
+ Summary Table
+ Inferred Pathway Levels Matrix
+ Methods & Data