name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme	callscheme_name	N_tot	nsil_tot	nnon_tot	rate_sil	rate_non
TCGA-BA-4074-01A-01D-1434-08	199	175	24	134	1.206030e-01	1	exome+100bp flanks	34834024	41	131	1.177010e-06	3.760691e-06
TCGA-BA-4075-01A-01D-1434-08	233	210	23	156	9.871245e-02	1	exome+100bp flanks	34834024	54	154	1.550208e-06	4.420965e-06
TCGA-BA-4076-01A-01D-1434-08	430	390	40	302	9.302326e-02	1	exome+100bp flanks	34834024	86	292	2.468851e-06	8.382609e-06
TCGA-BA-4077-01B-01D-1434-08	408	381	27	283	6.617647e-02	1	exome+100bp flanks	34834024	94	282	2.698511e-06	8.095533e-06
TCGA-BA-4078-01A-01D-1434-08	560	508	52	385	9.285714e-02	1	exome+100bp flanks	34834024	123	377	3.531030e-06	1.082275e-05
TCGA-BA-5149-01A-01D-1512-08	153	145	8	121	5.228758e-02	1	exome+100bp flanks	34834024	24	119	6.889816e-07	3.416200e-06
TCGA-BA-5151-01A-01D-1434-08	122	105	17	76	1.393443e-01	1	exome+100bp flanks	34834024	28	75	8.038118e-07	2.153067e-06
TCGA-BA-5152-01A-02D-1870-08	620	606	14	444	2.258065e-02	0	coding only	34834024	160	440	4.593210e-06	1.263133e-05
TCGA-BA-5153-01A-01D-1434-08	73	59	14	48	1.917808e-01	1	exome+100bp flanks	34834024	11	46	3.157832e-07	1.320548e-06
TCGA-BA-5555-01A-01D-1512-08	172	161	11	130	6.395349e-02	1	exome+100bp flanks	34834024	30	126	8.612269e-07	3.617153e-06
TCGA-BA-5556-01A-01D-1512-08	185	167	18	131	9.729730e-02	1	exome+100bp flanks	34834024	35	128	1.004765e-06	3.674568e-06
TCGA-BA-5557-01A-01D-1512-08	122	57	65	40	5.327869e-01	2	all capture (no interval list)	65505363	17	40	2.595207e-07	6.106370e-07
TCGA-BA-5558-01A-01D-1512-08	205	189	16	126	7.804878e-02	1	exome+100bp flanks	34834024	62	124	1.779869e-06	3.559738e-06
TCGA-BA-5559-01A-01D-1512-08	110	96	14	71	1.272727e-01	1	exome+100bp flanks	34834024	24	71	6.889816e-07	2.038237e-06
TCGA-BA-6868-01B-12D-1912-08	201	190	11	140	5.472637e-02	1	exome+100bp flanks	34834024	49	136	1.406671e-06	3.904229e-06
TCGA-BA-6869-01A-11D-1870-08	580	552	28	419	4.827586e-02	1	exome+100bp flanks	34834024	131	407	3.760691e-06	1.168398e-05
TCGA-BA-6870-01A-11D-1870-08	119	111	8	82	6.722689e-02	1	exome+100bp flanks	34834024	29	82	8.325194e-07	2.354020e-06
TCGA-BA-6871-01A-11D-1870-08	177	166	11	130	6.214689e-02	1	exome+100bp flanks	34834024	35	129	1.004765e-06	3.703276e-06
TCGA-BA-6872-01A-11D-1870-08	214	198	16	165	7.476636e-02	1	exome+100bp flanks	34834024	33	162	9.473496e-07	4.650625e-06
TCGA-BA-6873-01A-11D-1870-08	90	84	6	65	6.666667e-02	1	exome+100bp flanks	34834024	19	63	5.454437e-07	1.808577e-06
TCGA-BA-7269-01A-11D-2012-08	121	113	8	85	6.611570e-02	1	exome+100bp flanks	34834024	28	83	8.038118e-07	2.382728e-06
TCGA-BB-4217-01A-11D-2078-08	41	35	6	24	1.463415e-01	1	exome+100bp flanks	34834024	11	23	3.157832e-07	6.602740e-07
TCGA-BB-4223-01A-01D-1434-08	361	347	14	258	3.878116e-02	1	exome+100bp flanks	34834024	89	258	2.554973e-06	7.406552e-06
TCGA-BB-4224-01A-01D-1434-08	118	95	23	77	1.949153e-01	1	exome+100bp flanks	34834024	17	75	4.880286e-07	2.153067e-06
TCGA-BB-4225-01A-01D-1434-08	112	95	17	63	1.517857e-01	1	exome+100bp flanks	34834024	32	63	9.186421e-07	1.808577e-06
TCGA-BB-4227-01A-01D-1870-08	327	316	11	219	3.363914e-02	1	exome+100bp flanks	34834024	97	216	2.784634e-06	6.200834e-06
TCGA-BB-4228-01A-01D-1434-08	72	50	22	39	3.055556e-01	1	exome+100bp flanks	34834024	11	39	3.157832e-07	1.119595e-06
TCGA-BB-7861-01A-11D-2229-08	56	36	20	29	3.571429e-01	1	exome+100bp flanks	34834024	7	27	2.009530e-07	7.751042e-07
TCGA-BB-7862-01A-21D-2229-08	486	455	31	334	6.378601e-02	1	exome+100bp flanks	34834024	118	327	3.387493e-06	9.387374e-06
TCGA-BB-7863-01A-11D-2229-08	87	79	8	50	9.195402e-02	1	exome+100bp flanks	34834024	29	47	8.325194e-07	1.349256e-06
TCGA-BB-7864-01A-11D-2229-08	137	109	28	83	2.043796e-01	1	exome+100bp flanks	34834024	24	82	6.889816e-07	2.354020e-06
TCGA-BB-7866-01A-11D-2229-08	80	70	10	56	1.250000e-01	1	exome+100bp flanks	34834024	13	54	3.731983e-07	1.550208e-06
TCGA-BB-7870-01A-11D-2229-08	85	79	6	58	7.058824e-02	1	exome+100bp flanks	34834024	21	55	6.028589e-07	1.578916e-06
TCGA-BB-7871-01A-11D-2229-08	461	440	21	357	4.555315e-02	1	exome+100bp flanks	34834024	82	354	2.354020e-06	1.016248e-05
TCGA-BB-7872-01A-11D-2229-08	91	77	14	61	1.538462e-01	1	exome+100bp flanks	34834024	16	60	4.593210e-07	1.722454e-06
TCGA-CN-4723-01A-01D-1434-08	1083	1052	31	774	2.862419e-02	0	coding only	34834024	274	766	7.865873e-06	2.198999e-05
TCGA-CN-4725-01A-01D-1434-08	93	75	18	55	1.935484e-01	1	exome+100bp flanks	34834024	20	52	5.741513e-07	1.492793e-06
TCGA-CN-4726-01A-01D-1434-08	120	99	21	72	1.750000e-01	1	exome+100bp flanks	34834024	27	69	7.751042e-07	1.980822e-06
TCGA-CN-4727-01A-01D-1434-08	525	484	41	375	7.809524e-02	1	exome+100bp flanks	34834024	109	367	3.129125e-06	1.053568e-05
TCGA-CN-4728-01A-01D-1434-08	194	168	26	126	1.340206e-01	1	exome+100bp flanks	34834024	42	122	1.205718e-06	3.502323e-06
TCGA-CN-4729-01A-01D-1434-08	202	176	26	126	1.287129e-01	1	exome+100bp flanks	34834024	50	123	1.435378e-06	3.531030e-06
TCGA-CN-4730-01A-01D-1434-08	214	198	16	156	7.476636e-02	1	exome+100bp flanks	34834024	42	156	1.205718e-06	4.478380e-06
TCGA-CN-4731-01A-01D-1434-08	165	142	23	98	1.393939e-01	1	exome+100bp flanks	34834024	44	97	1.263133e-06	2.784634e-06
TCGA-CN-4733-01A-02D-1870-08	54	47	7	34	1.296296e-01	1	exome+100bp flanks	34834024	13	33	3.731983e-07	9.473496e-07
TCGA-CN-4734-01A-01D-1434-08	210	194	16	138	7.619048e-02	1	exome+100bp flanks	34834024	56	136	1.607624e-06	3.904229e-06
TCGA-CN-4735-01A-01D-1434-08	203	180	23	133	1.133005e-01	1	exome+100bp flanks	34834024	45	130	1.291840e-06	3.731983e-06
TCGA-CN-4736-01A-01D-1434-08	118	107	11	89	9.322034e-02	1	exome+100bp flanks	34834024	18	87	5.167362e-07	2.497558e-06
TCGA-CN-4737-01A-01D-1434-08	84	63	21	46	2.500000e-01	1	exome+100bp flanks	34834024	17	42	4.880286e-07	1.205718e-06
TCGA-CN-4738-01A-02D-1512-08	147	135	12	99	8.163265e-02	1	exome+100bp flanks	34834024	35	98	1.004765e-06	2.813341e-06
TCGA-CN-4739-01A-02D-1512-08	267	249	18	191	6.741573e-02	1	exome+100bp flanks	34834024	57	186	1.636331e-06	5.339607e-06
TCGA-CN-4740-01A-01D-1434-08	212	179	33	135	1.556604e-01	1	exome+100bp flanks	34834024	44	133	1.263133e-06	3.818106e-06
TCGA-CN-4741-01A-01D-1434-08	224	209	15	154	6.696429e-02	1	exome+100bp flanks	34834024	52	150	1.492793e-06	4.306135e-06
TCGA-CN-4742-01A-02D-1512-08	119	98	21	76	1.764706e-01	1	exome+100bp flanks	34834024	22	76	6.315664e-07	2.181775e-06
TCGA-CN-5355-01A-01D-1434-08	143	127	16	99	1.118881e-01	1	exome+100bp flanks	34834024	28	97	8.038118e-07	2.784634e-06
TCGA-CN-5356-01A-01D-1434-08	455	421	34	321	7.472527e-02	1	exome+100bp flanks	34834024	98	313	2.813341e-06	8.985468e-06
TCGA-CN-5358-01A-01D-1512-08	71	65	6	53	8.450704e-02	1	exome+100bp flanks	34834024	12	50	3.444908e-07	1.435378e-06
TCGA-CN-5359-01A-01D-1434-08	192	180	12	137	6.250000e-02	1	exome+100bp flanks	34834024	43	132	1.234425e-06	3.789399e-06
TCGA-CN-5360-01A-01D-1434-08	618	579	39	446	6.310680e-02	1	exome+100bp flanks	34834024	132	437	3.789399e-06	1.254521e-05
TCGA-CN-5361-01A-01D-1434-08	152	135	17	89	1.118421e-01	1	exome+100bp flanks	34834024	46	89	1.320548e-06	2.554973e-06
TCGA-CN-5363-01A-01D-1434-08	253	230	23	165	9.090909e-02	1	exome+100bp flanks	34834024	64	163	1.837284e-06	4.679333e-06
TCGA-CN-5364-01A-01D-1434-08	172	158	14	133	8.139535e-02	1	exome+100bp flanks	34834024	24	132	6.889816e-07	3.789399e-06
TCGA-CN-5365-01A-01D-1434-08	131	108	23	83	1.755725e-01	1	exome+100bp flanks	34834024	23	80	6.602740e-07	2.296605e-06
TCGA-CN-5366-01A-01D-1434-08	139	123	16	96	1.151079e-01	1	exome+100bp flanks	34834024	27	94	7.751042e-07	2.698511e-06
TCGA-CN-5367-01A-01D-1434-08	142	128	14	98	9.859155e-02	1	exome+100bp flanks	34834024	28	97	8.038118e-07	2.784634e-06
TCGA-CN-5369-01A-01D-1434-08	683	645	38	516	5.563690e-02	1	exome+100bp flanks	34834024	127	512	3.645861e-06	1.469827e-05
TCGA-CN-5370-01A-01D-2012-08	128	121	7	96	5.468750e-02	1	exome+100bp flanks	34834024	25	95	7.176891e-07	2.727219e-06
TCGA-CN-5373-01A-01D-1434-08	202	183	19	134	9.405941e-02	1	exome+100bp flanks	34834024	47	132	1.349256e-06	3.789399e-06
TCGA-CN-5374-01A-01D-1434-08	238	211	27	150	1.134454e-01	1	exome+100bp flanks	34834024	60	148	1.722454e-06	4.248720e-06
TCGA-CN-6010-01A-11D-1683-08	201	191	10	144	4.975124e-02	1	exome+100bp flanks	34834024	46	144	1.320548e-06	4.133889e-06
TCGA-CN-6011-01A-11D-1683-08	435	419	16	311	3.678161e-02	1	exome+100bp flanks	34834024	103	303	2.956879e-06	8.698392e-06
TCGA-CN-6012-01A-11D-1683-08	148	141	7	114	4.729730e-02	1	exome+100bp flanks	34834024	26	114	7.463967e-07	3.272662e-06
TCGA-CN-6013-01A-11D-1683-08	231	224	7	168	3.030303e-02	1	exome+100bp flanks	34834024	54	165	1.550208e-06	4.736748e-06
TCGA-CN-6016-01A-11D-1683-08	147	142	5	106	3.401361e-02	1	exome+100bp flanks	34834024	36	104	1.033472e-06	2.985587e-06
TCGA-CN-6017-01A-11D-1683-08	12	11	1	8	8.333333e-02	1	exome+100bp flanks	34834024	2	8	5.741513e-08	2.296605e-07
TCGA-CN-6018-01A-11D-1683-08	135	129	6	91	4.444444e-02	1	exome+100bp flanks	34834024	38	88	1.090887e-06	2.526266e-06
TCGA-CN-6019-01A-11D-1683-08	158	153	5	123	3.164557e-02	1	exome+100bp flanks	34834024	30	122	8.612269e-07	3.502323e-06
TCGA-CN-6020-01A-11D-1683-08	193	185	8	128	4.145078e-02	1	exome+100bp flanks	34834024	55	126	1.578916e-06	3.617153e-06
TCGA-CN-6021-01A-11D-1683-08	352	330	22	256	6.250000e-02	1	exome+100bp flanks	34834024	71	249	2.038237e-06	7.148184e-06
TCGA-CN-6022-01A-21D-1683-08	96	94	2	63	2.083333e-02	1	exome+100bp flanks	34834024	31	62	8.899345e-07	1.779869e-06
TCGA-CN-6023-01A-11D-1683-08	137	125	12	106	8.759124e-02	1	exome+100bp flanks	34834024	19	103	5.454437e-07	2.956879e-06
TCGA-CN-6024-01A-11D-1683-08	215	205	10	127	4.651163e-02	1	exome+100bp flanks	34834024	77	127	2.210482e-06	3.645861e-06
TCGA-CN-6988-01A-11D-1912-08	190	180	10	138	5.263158e-02	1	exome+100bp flanks	34834024	42	134	1.205718e-06	3.846814e-06
TCGA-CN-6989-01A-11D-1912-08	126	125	1	93	7.936508e-03	0	coding only	34834024	30	93	8.612269e-07	2.669804e-06
TCGA-CN-6992-01A-11D-1912-08	429	400	29	302	6.759907e-02	1	exome+100bp flanks	34834024	97	295	2.784634e-06	8.468732e-06
TCGA-CN-6994-01A-11D-1912-08	157	142	15	105	9.554140e-02	1	exome+100bp flanks	34834024	36	102	1.033472e-06	2.928172e-06
TCGA-CN-6995-01A-31D-2012-08	277	262	15	209	5.415162e-02	1	exome+100bp flanks	34834024	52	205	1.492793e-06	5.885051e-06
TCGA-CN-6996-01A-11D-1912-08	73	68	5	51	6.849315e-02	1	exome+100bp flanks	34834024	17	50	4.880286e-07	1.435378e-06
TCGA-CN-6997-01A-11D-2012-08	176	164	12	133	6.818182e-02	1	exome+100bp flanks	34834024	31	130	8.899345e-07	3.731983e-06
TCGA-CN-6998-01A-23D-2012-08	109	102	7	67	6.422018e-02	1	exome+100bp flanks	34834024	34	66	9.760572e-07	1.894699e-06
TCGA-CQ-5323-01A-01D-1683-08	89	84	5	63	5.617978e-02	1	exome+100bp flanks	34834024	20	61	5.741513e-07	1.751161e-06
TCGA-CQ-5324-01A-01D-1683-08	84	82	2	66	2.380952e-02	1	exome+100bp flanks	34834024	16	65	4.593210e-07	1.865992e-06
TCGA-CQ-5325-01A-01D-1683-08	70	64	6	52	8.571429e-02	1	exome+100bp flanks	34834024	12	51	3.444908e-07	1.464086e-06
TCGA-CQ-5326-01A-01D-1870-08	275	268	7	188	2.545455e-02	0	coding only	34834024	77	184	2.210482e-06	5.282192e-06
TCGA-CQ-5327-01A-01D-1683-08	285	273	12	207	4.210526e-02	1	exome+100bp flanks	34834024	65	205	1.865992e-06	5.885051e-06
TCGA-CQ-5329-01A-01D-1683-08	44	40	4	32	9.090909e-02	1	exome+100bp flanks	34834024	8	32	2.296605e-07	9.186421e-07
TCGA-CQ-5330-01A-01D-1683-08	84	81	3	59	3.571429e-02	1	exome+100bp flanks	34834024	21	59	6.028589e-07	1.693746e-06
TCGA-CQ-5331-01A-02D-1870-08	183	176	7	141	3.825137e-02	1	exome+100bp flanks	34834024	35	137	1.004765e-06	3.932936e-06
TCGA-CQ-5332-01A-01D-1683-08	172	166	6	126	3.488372e-02	1	exome+100bp flanks	34834024	40	124	1.148303e-06	3.559738e-06
TCGA-CQ-5334-01A-01D-1683-08	224	214	10	163	4.464286e-02	1	exome+100bp flanks	34834024	51	163	1.464086e-06	4.679333e-06
TCGA-CQ-6218-01A-11D-1912-08	176	165	11	112	6.250000e-02	1	exome+100bp flanks	34834024	52	107	1.492793e-06	3.071709e-06
TCGA-CQ-6219-01A-11D-1912-08	102	91	11	66	1.078431e-01	1	exome+100bp flanks	34834024	24	66	6.889816e-07	1.894699e-06
TCGA-CQ-6220-01A-11D-1912-08	144	135	9	101	6.250000e-02	1	exome+100bp flanks	34834024	34	101	9.760572e-07	2.899464e-06
TCGA-CQ-6221-01A-11D-2078-08	143	137	6	109	4.195804e-02	1	exome+100bp flanks	34834024	27	108	7.751042e-07	3.100417e-06
TCGA-CQ-6222-01A-11D-1912-08	82	79	3	62	3.658537e-02	1	exome+100bp flanks	34834024	17	60	4.880286e-07	1.722454e-06
TCGA-CQ-6223-01A-11D-1912-08	114	107	7	78	6.140351e-02	1	exome+100bp flanks	34834024	28	78	8.038118e-07	2.239190e-06
TCGA-CQ-6224-01A-11D-1912-08	97	91	6	62	6.185567e-02	1	exome+100bp flanks	34834024	29	58	8.325194e-07	1.665039e-06
TCGA-CQ-6225-01A-11D-1912-08	197	183	14	140	7.106599e-02	1	exome+100bp flanks	34834024	41	135	1.177010e-06	3.875521e-06
TCGA-CQ-6227-01A-11D-1912-08	53	50	3	37	5.660377e-02	1	exome+100bp flanks	34834024	13	37	3.731983e-07	1.062180e-06
TCGA-CQ-6228-01A-11D-1912-08	144	128	16	107	1.111111e-01	1	exome+100bp flanks	34834024	21	104	6.028589e-07	2.985587e-06
TCGA-CQ-6229-01A-11D-1912-08	42	36	6	26	1.428571e-01	1	exome+100bp flanks	34834024	10	26	2.870756e-07	7.463967e-07
TCGA-CQ-7065-01A-11D-2078-08	49	40	9	27	1.836735e-01	1	exome+100bp flanks	34834024	11	27	3.157832e-07	7.751042e-07
TCGA-CQ-7067-01A-11D-2229-08	80	70	10	56	1.250000e-01	1	exome+100bp flanks	34834024	13	53	3.731983e-07	1.521501e-06
TCGA-CQ-7068-01A-11D-2078-08	138	128	10	92	7.246377e-02	1	exome+100bp flanks	34834024	36	90	1.033472e-06	2.583681e-06
TCGA-CR-5243-01A-01D-1512-08	96	88	8	66	8.333333e-02	1	exome+100bp flanks	34834024	21	64	6.028589e-07	1.837284e-06
TCGA-CR-5247-01A-01D-2012-08	100	91	9	72	9.000000e-02	1	exome+100bp flanks	34834024	19	70	5.454437e-07	2.009530e-06
TCGA-CR-5248-01A-01D-2012-08	409	397	12	309	2.933985e-02	0	coding only	34834024	88	302	2.526266e-06	8.669685e-06
TCGA-CR-5249-01A-01D-1512-08	65	53	12	35	1.846154e-01	1	exome+100bp flanks	34834024	18	35	5.167362e-07	1.004765e-06
TCGA-CR-5250-01A-01D-1512-08	56	43	13	35	2.321429e-01	1	exome+100bp flanks	34834024	8	34	2.296605e-07	9.760572e-07
TCGA-CR-6467-01A-11D-1870-08	69	58	11	37	1.594203e-01	1	exome+100bp flanks	34834024	21	37	6.028589e-07	1.062180e-06
TCGA-CR-6470-01A-11D-1870-08	58	50	8	40	1.379310e-01	1	exome+100bp flanks	34834024	10	39	2.870756e-07	1.119595e-06
TCGA-CR-6471-01A-11D-1870-08	170	165	5	121	2.941176e-02	0	coding only	34834024	43	117	1.234425e-06	3.358785e-06
TCGA-CR-6472-01A-11D-1870-08	564	549	15	415	2.659574e-02	0	coding only	34834024	133	411	3.818106e-06	1.179881e-05
TCGA-CR-6473-01A-11D-1870-08	121	113	8	87	6.611570e-02	1	exome+100bp flanks	34834024	26	85	7.463967e-07	2.440143e-06
TCGA-CR-6474-01A-11D-1870-08	139	129	10	99	7.194245e-02	1	exome+100bp flanks	34834024	30	98	8.612269e-07	2.813341e-06
TCGA-CR-6477-01A-11D-1870-08	113	105	8	79	7.079646e-02	1	exome+100bp flanks	34834024	26	78	7.463967e-07	2.239190e-06
TCGA-CR-6478-01A-11D-1870-08	161	152	9	99	5.590062e-02	1	exome+100bp flanks	34834024	51	96	1.464086e-06	2.755926e-06
TCGA-CR-6480-01A-11D-1870-08	147	136	11	99	7.482993e-02	1	exome+100bp flanks	34834024	37	96	1.062180e-06	2.755926e-06
TCGA-CR-6481-01A-11D-1870-08	579	561	18	431	3.108808e-02	1	exome+100bp flanks	34834024	130	429	3.731983e-06	1.231555e-05
TCGA-CR-6482-01A-11D-1870-08	60	58	2	41	3.333333e-02	1	exome+100bp flanks	34834024	17	41	4.880286e-07	1.177010e-06
TCGA-CR-6484-01A-11D-1870-08	332	326	6	240	1.807229e-02	0	coding only	34834024	83	238	2.382728e-06	6.832400e-06
TCGA-CR-6487-01A-11D-1870-08	169	155	14	126	8.284024e-02	1	exome+100bp flanks	34834024	28	121	8.038118e-07	3.473615e-06
TCGA-CR-6488-01A-12D-2078-08	52	47	5	36	9.615385e-02	1	exome+100bp flanks	34834024	11	34	3.157832e-07	9.760572e-07
TCGA-CR-6491-01A-11D-1870-08	176	168	8	117	4.545455e-02	1	exome+100bp flanks	34834024	51	115	1.464086e-06	3.301370e-06
TCGA-CR-6492-01A-12D-2078-08	84	78	6	58	7.142857e-02	1	exome+100bp flanks	34834024	19	58	5.454437e-07	1.665039e-06
TCGA-CR-6493-01A-11D-1870-08	51	47	4	40	7.843137e-02	1	exome+100bp flanks	34834024	7	39	2.009530e-07	1.119595e-06
TCGA-CR-7364-01A-11D-2012-08	552	525	27	403	4.891304e-02	1	exome+100bp flanks	34834024	121	395	3.473615e-06	1.133949e-05
TCGA-CR-7365-01A-11D-2012-08	206	199	7	153	3.398058e-02	1	exome+100bp flanks	34834024	46	150	1.320548e-06	4.306135e-06
TCGA-CR-7367-01A-11D-2012-08	216	202	14	157	6.481481e-02	1	exome+100bp flanks	34834024	45	156	1.291840e-06	4.478380e-06
TCGA-CR-7368-01A-11D-2129-08	247	242	5	184	2.024291e-02	0	coding only	34834024	56	183	1.607624e-06	5.253484e-06
TCGA-CR-7369-01A-11D-2129-08	97	89	8	70	8.247423e-02	1	exome+100bp flanks	34834024	19	69	5.454437e-07	1.980822e-06
TCGA-CR-7370-01A-11D-2129-08	653	618	35	452	5.359877e-02	1	exome+100bp flanks	34834024	164	445	4.708041e-06	1.277487e-05
TCGA-CR-7371-01A-11D-2012-08	356	344	12	260	3.370787e-02	1	exome+100bp flanks	34834024	84	255	2.411435e-06	7.320429e-06
TCGA-CR-7372-01A-11D-2012-08	64	60	4	48	6.250000e-02	1	exome+100bp flanks	34834024	12	47	3.444908e-07	1.349256e-06
TCGA-CR-7373-01A-11D-2012-08	141	139	2	95	1.418440e-02	0	coding only	34834024	44	95	1.263133e-06	2.727219e-06
TCGA-CR-7374-01A-11D-2012-08	450	426	24	335	5.333333e-02	1	exome+100bp flanks	34834024	91	326	2.612388e-06	9.358666e-06
TCGA-CR-7376-01A-11D-2129-08	80	77	3	61	3.750000e-02	1	exome+100bp flanks	34834024	15	59	4.306135e-07	1.693746e-06
TCGA-CR-7377-01A-11D-2012-08	161	153	8	108	4.968944e-02	1	exome+100bp flanks	34834024	43	107	1.234425e-06	3.071709e-06
TCGA-CR-7379-01A-11D-2012-08	182	177	5	120	2.747253e-02	0	coding only	34834024	56	119	1.607624e-06	3.416200e-06
TCGA-CR-7380-01A-11D-2012-08	120	116	4	92	3.333333e-02	1	exome+100bp flanks	34834024	24	89	6.889816e-07	2.554973e-06
TCGA-CR-7382-01A-11D-2129-08	111	103	8	78	7.207207e-02	1	exome+100bp flanks	34834024	25	77	7.176891e-07	2.210482e-06
TCGA-CR-7383-01A-11D-2129-08	130	123	7	95	5.384615e-02	1	exome+100bp flanks	34834024	27	95	7.751042e-07	2.727219e-06
TCGA-CR-7385-01A-11D-2012-08	66	62	4	47	6.060606e-02	1	exome+100bp flanks	34834024	14	45	4.019059e-07	1.291840e-06
TCGA-CR-7386-01A-11D-2012-08	236	228	8	166	3.389831e-02	1	exome+100bp flanks	34834024	62	161	1.779869e-06	4.621918e-06
TCGA-CR-7388-01A-11D-2012-08	882	851	31	656	3.514739e-02	1	exome+100bp flanks	34834024	192	642	5.511852e-06	1.843026e-05
TCGA-CR-7389-01A-11D-2012-08	143	137	6	97	4.195804e-02	1	exome+100bp flanks	34834024	39	95	1.119595e-06	2.727219e-06
TCGA-CR-7390-01A-11D-2012-08	167	160	7	109	4.191617e-02	1	exome+100bp flanks	34834024	51	108	1.464086e-06	3.100417e-06
TCGA-CR-7391-01A-11D-2012-08	13	13	0	11	0	1	exome+100bp flanks	34834024	2	10	5.741513e-08	2.870756e-07
TCGA-CR-7392-01A-11D-2012-08	43	41	2	34	4.651163e-02	1	exome+100bp flanks	34834024	7	33	2.009530e-07	9.473496e-07
TCGA-CR-7393-01A-11D-2012-08	8	5	3	3	3.750000e-01	1	exome+100bp flanks	34834024	1	3	2.870756e-08	8.612269e-08
TCGA-CR-7394-01A-11D-2012-08	221	217	4	154	1.809955e-02	0	coding only	34834024	61	152	1.751161e-06	4.363550e-06
TCGA-CR-7395-01A-11D-2012-08	215	211	4	146	1.860465e-02	0	coding only	34834024	64	145	1.837284e-06	4.162597e-06
TCGA-CR-7397-01A-11D-2012-08	60	57	3	41	5.000000e-02	1	exome+100bp flanks	34834024	15	39	4.306135e-07	1.119595e-06
TCGA-CR-7398-01A-11D-2012-08	430	402	28	303	6.511628e-02	1	exome+100bp flanks	34834024	96	298	2.755926e-06	8.554854e-06
TCGA-CR-7399-01A-11D-2012-08	342	327	15	258	4.385965e-02	1	exome+100bp flanks	34834024	67	252	1.923407e-06	7.234306e-06
TCGA-CR-7401-01A-11D-2012-08	119	110	9	72	7.563025e-02	1	exome+100bp flanks	34834024	36	72	1.033472e-06	2.066945e-06
TCGA-CR-7402-01A-11D-2012-08	1135	1088	47	847	4.140969e-02	1	exome+100bp flanks	34834024	234	834	6.717570e-06	2.394211e-05
TCGA-CR-7404-01A-11D-2129-08	168	152	16	112	9.523810e-02	1	exome+100bp flanks	34834024	40	111	1.148303e-06	3.186540e-06
TCGA-CV-5430-01A-02D-1683-08	200	187	13	140	6.500000e-02	1	exome+100bp flanks	34834024	46	137	1.320548e-06	3.932936e-06
TCGA-CV-5431-01A-01D-1512-08	125	109	16	78	1.280000e-01	1	exome+100bp flanks	34834024	31	75	8.899345e-07	2.153067e-06
TCGA-CV-5432-01A-02D-1683-08	345	319	26	235	7.536232e-02	1	exome+100bp flanks	34834024	84	230	2.411435e-06	6.602740e-06
TCGA-CV-5434-01A-01D-1683-08	195	178	17	143	8.717949e-02	1	exome+100bp flanks	34834024	31	141	8.899345e-07	4.047767e-06
TCGA-CV-5435-01A-01D-1683-08	150	141	9	104	6.000000e-02	1	exome+100bp flanks	34834024	36	100	1.033472e-06	2.870756e-06
TCGA-CV-5436-01A-01D-1512-08	177	138	39	107	2.203390e-01	1	exome+100bp flanks	34834024	30	105	8.612269e-07	3.014294e-06
TCGA-CV-5439-01A-01D-1683-08	144	131	13	96	9.027778e-02	1	exome+100bp flanks	34834024	35	94	1.004765e-06	2.698511e-06
TCGA-CV-5440-01A-01D-1512-08	143	136	7	103	4.895105e-02	1	exome+100bp flanks	34834024	33	102	9.473496e-07	2.928172e-06
TCGA-CV-5441-01A-01D-1512-08	476	434	42	327	8.823529e-02	1	exome+100bp flanks	34834024	106	320	3.043002e-06	9.186421e-06
TCGA-CV-5442-01A-01D-1512-08	337	308	29	238	8.605341e-02	1	exome+100bp flanks	34834024	70	236	2.009530e-06	6.774985e-06
TCGA-CV-5443-01A-01D-1512-08	138	69	69	46	5.000000e-01	2	all capture (no interval list)	65505363	22	45	3.358504e-07	6.869667e-07
TCGA-CV-5444-01A-02D-1512-08	180	158	22	109	1.222222e-01	1	exome+100bp flanks	34834024	49	109	1.406671e-06	3.129125e-06
TCGA-CV-5966-01A-11D-1683-08	143	133	10	100	6.993007e-02	1	exome+100bp flanks	34834024	32	97	9.186421e-07	2.784634e-06
TCGA-CV-5970-01A-11D-1683-08	251	237	14	177	5.577689e-02	1	exome+100bp flanks	34834024	60	171	1.722454e-06	4.908994e-06
TCGA-CV-5971-01A-11D-1683-08	38	35	3	23	7.894737e-02	1	exome+100bp flanks	34834024	12	21	3.444908e-07	6.028589e-07
TCGA-CV-5973-01A-11D-1683-08	81	76	5	51	6.172840e-02	1	exome+100bp flanks	34834024	25	49	7.176891e-07	1.406671e-06
TCGA-CV-5976-01A-11D-1683-08	98	92	6	67	6.122449e-02	1	exome+100bp flanks	34834024	25	66	7.176891e-07	1.894699e-06
TCGA-CV-5977-01A-11D-1683-08	116	108	8	69	6.896552e-02	1	exome+100bp flanks	34834024	39	69	1.119595e-06	1.980822e-06
TCGA-CV-5978-01A-11D-1683-08	219	204	15	158	6.849315e-02	1	exome+100bp flanks	34834024	43	155	1.234425e-06	4.449673e-06
TCGA-CV-5979-01A-11D-1683-08	47	43	4	35	8.510638e-02	1	exome+100bp flanks	34834024	7	35	2.009530e-07	1.004765e-06
TCGA-CV-6003-01A-11D-1683-08	125	116	9	92	7.200000e-02	1	exome+100bp flanks	34834024	24	91	6.889816e-07	2.612388e-06
TCGA-CV-6433-01A-11D-1683-08	78	72	6	53	7.692308e-02	1	exome+100bp flanks	34834024	19	53	5.454437e-07	1.521501e-06
TCGA-CV-6436-01A-11D-1683-08	95	90	5	69	5.263158e-02	1	exome+100bp flanks	34834024	21	68	6.028589e-07	1.952114e-06
TCGA-CV-6441-01A-11D-1683-08	281	266	15	199	5.338078e-02	1	exome+100bp flanks	34834024	66	192	1.894699e-06	5.511852e-06
TCGA-CV-6933-01A-11D-1912-08	154	141	13	109	8.441558e-02	1	exome+100bp flanks	34834024	32	107	9.186421e-07	3.071709e-06
TCGA-CV-6934-01A-11D-1912-08	121	115	6	91	4.958678e-02	1	exome+100bp flanks	34834024	23	87	6.602740e-07	2.497558e-06
TCGA-CV-6935-01A-11D-1912-08	278	260	18	205	6.474820e-02	1	exome+100bp flanks	34834024	55	198	1.578916e-06	5.684098e-06
TCGA-CV-6936-01A-11D-1912-08	336	321	15	236	4.464286e-02	1	exome+100bp flanks	34834024	85	236	2.440143e-06	6.774985e-06
TCGA-CV-6937-01A-11D-2012-08	162	155	7	116	4.320988e-02	1	exome+100bp flanks	34834024	38	115	1.090887e-06	3.301370e-06
TCGA-CV-6938-01A-11D-1912-08	183	179	4	145	2.185792e-02	0	coding only	34834024	34	142	9.760572e-07	4.076474e-06
TCGA-CV-6939-01A-11D-1912-08	62	57	5	41	8.064516e-02	1	exome+100bp flanks	34834024	14	40	4.019059e-07	1.148303e-06
TCGA-CV-6940-01A-11D-1912-08	172	159	13	119	7.558140e-02	1	exome+100bp flanks	34834024	39	118	1.119595e-06	3.387493e-06
TCGA-CV-6941-01A-11D-1912-08	186	172	14	130	7.526882e-02	1	exome+100bp flanks	34834024	42	126	1.205718e-06	3.617153e-06
TCGA-CV-6942-01A-21D-2012-08	278	267	11	203	3.956835e-02	1	exome+100bp flanks	34834024	64	201	1.837284e-06	5.770221e-06
TCGA-CV-6943-01A-11D-1912-08	80	74	6	56	7.500000e-02	1	exome+100bp flanks	34834024	18	55	5.167362e-07	1.578916e-06
TCGA-CV-6945-01A-11D-1912-08	168	159	9	114	5.357143e-02	1	exome+100bp flanks	34834024	43	114	1.234425e-06	3.272662e-06
TCGA-CV-6948-01A-11D-1912-08	244	238	6	176	2.459016e-02	0	coding only	34834024	61	171	1.751161e-06	4.908994e-06
TCGA-CV-6950-01A-11D-1912-08	81	70	11	53	1.358025e-01	1	exome+100bp flanks	34834024	16	53	4.593210e-07	1.521501e-06
TCGA-CV-6951-01A-11D-1912-08	166	156	10	119	6.024096e-02	1	exome+100bp flanks	34834024	36	117	1.033472e-06	3.358785e-06
TCGA-CV-6952-01A-11D-1912-08	212	196	16	149	7.547170e-02	1	exome+100bp flanks	34834024	46	147	1.320548e-06	4.220012e-06
TCGA-CV-6953-01A-11D-1912-08	137	126	11	98	8.029197e-02	1	exome+100bp flanks	34834024	26	98	7.463967e-07	2.813341e-06
TCGA-CV-6954-01A-11D-1912-08	215	195	20	153	9.302326e-02	1	exome+100bp flanks	34834024	41	146	1.177010e-06	4.191304e-06
TCGA-CV-6955-01A-11D-2012-08	165	158	7	117	4.242424e-02	1	exome+100bp flanks	34834024	41	115	1.177010e-06	3.301370e-06
TCGA-CV-6956-01A-21D-2012-08	254	223	31	160	1.220472e-01	1	exome+100bp flanks	34834024	63	158	1.808577e-06	4.535795e-06
TCGA-CV-6959-01A-11D-1912-08	93	82	11	59	1.182796e-01	1	exome+100bp flanks	34834024	22	55	6.315664e-07	1.578916e-06
TCGA-CV-6960-01A-41D-2012-08	235	210	25	160	1.063830e-01	1	exome+100bp flanks	34834024	49	157	1.406671e-06	4.507088e-06
TCGA-CV-6961-01A-21D-1912-08	701	668	33	496	4.707561e-02	1	exome+100bp flanks	34834024	171	490	4.908994e-06	1.406671e-05
TCGA-CV-6962-01A-11D-1912-08	193	173	20	145	1.036269e-01	1	exome+100bp flanks	34834024	27	143	7.751042e-07	4.105182e-06
TCGA-CV-7089-01A-11D-2012-08	209	198	11	153	5.263158e-02	1	exome+100bp flanks	34834024	45	149	1.291840e-06	4.277427e-06
TCGA-CV-7090-01A-11D-2012-08	64	59	5	43	7.812500e-02	1	exome+100bp flanks	34834024	16	43	4.593210e-07	1.234425e-06
TCGA-CV-7091-01A-11D-2012-08	171	161	10	124	5.847953e-02	1	exome+100bp flanks	34834024	37	121	1.062180e-06	3.473615e-06
TCGA-CV-7095-01A-21D-2012-08	304	288	16	212	5.263158e-02	1	exome+100bp flanks	34834024	73	210	2.095652e-06	6.028589e-06
TCGA-CV-7097-01A-11D-2012-08	133	115	18	84	1.353383e-01	1	exome+100bp flanks	34834024	31	81	8.899345e-07	2.325313e-06
TCGA-CV-7099-01A-41D-2012-08	367	353	14	257	3.814714e-02	1	exome+100bp flanks	34834024	95	253	2.727219e-06	7.263014e-06
TCGA-CV-7100-01A-11D-2012-08	26	22	4	18	1.538462e-01	1	exome+100bp flanks	34834024	4	16	1.148303e-07	4.593210e-07
TCGA-CV-7101-01A-11D-2012-08	248	230	18	180	7.258065e-02	1	exome+100bp flanks	34834024	50	179	1.435378e-06	5.138654e-06
TCGA-CV-7102-01A-11D-2012-08	173	166	7	129	4.046243e-02	1	exome+100bp flanks	34834024	37	129	1.062180e-06	3.703276e-06
TCGA-CV-7103-01A-21D-2012-08	65	56	9	43	1.384615e-01	1	exome+100bp flanks	34834024	13	40	3.731983e-07	1.148303e-06
TCGA-CV-7104-01A-11D-2012-08	133	126	7	100	5.263158e-02	1	exome+100bp flanks	34834024	26	99	7.463967e-07	2.842049e-06
TCGA-CV-7177-01A-11D-2012-08	147	137	10	104	6.802721e-02	1	exome+100bp flanks	34834024	33	101	9.473496e-07	2.899464e-06
TCGA-CV-7178-01A-21D-2012-08	158	144	14	107	8.860759e-02	1	exome+100bp flanks	34834024	36	103	1.033472e-06	2.956879e-06
TCGA-CV-7180-01A-11D-2012-08	81	78	3	59	3.703704e-02	1	exome+100bp flanks	34834024	19	58	5.454437e-07	1.665039e-06
TCGA-CV-7183-01A-11D-2012-08	97	93	4	70	4.123711e-02	1	exome+100bp flanks	34834024	22	64	6.315664e-07	1.837284e-06
TCGA-CV-7235-01A-11D-2012-08	173	163	10	120	5.780347e-02	1	exome+100bp flanks	34834024	43	119	1.234425e-06	3.416200e-06
TCGA-CV-7236-01A-11D-2012-08	73	69	4	47	5.479452e-02	1	exome+100bp flanks	34834024	22	46	6.315664e-07	1.320548e-06
TCGA-CV-7238-01A-11D-2012-08	93	83	10	61	1.075269e-01	1	exome+100bp flanks	34834024	21	59	6.028589e-07	1.693746e-06
TCGA-CV-7242-01A-11D-2012-08	371	345	26	277	7.008086e-02	1	exome+100bp flanks	34834024	67	269	1.923407e-06	7.722335e-06
TCGA-CV-7243-01A-11D-2012-08	98	86	12	66	1.224490e-01	1	exome+100bp flanks	34834024	20	65	5.741513e-07	1.865992e-06
TCGA-CV-7245-01A-11D-2012-08	606	580	26	441	4.290429e-02	1	exome+100bp flanks	34834024	134	428	3.846814e-06	1.228684e-05
TCGA-CV-7247-01A-11D-2012-08	106	89	17	70	1.603774e-01	1	exome+100bp flanks	34834024	18	69	5.167362e-07	1.980822e-06
TCGA-CV-7248-01A-11D-2012-08	367	343	24	260	6.539510e-02	1	exome+100bp flanks	34834024	82	256	2.354020e-06	7.349137e-06
TCGA-CV-7250-01A-11D-2012-08	269	253	16	186	5.947955e-02	1	exome+100bp flanks	34834024	64	182	1.837284e-06	5.224777e-06
TCGA-CV-7252-01A-11D-2012-08	285	273	12	196	4.210526e-02	1	exome+100bp flanks	34834024	77	196	2.210482e-06	5.626683e-06
TCGA-CV-7253-01A-11D-2012-08	236	225	11	179	4.661017e-02	1	exome+100bp flanks	34834024	45	177	1.291840e-06	5.081239e-06
TCGA-CV-7254-01A-11D-2012-08	315	301	14	228	4.444444e-02	1	exome+100bp flanks	34834024	73	224	2.095652e-06	6.430495e-06
TCGA-CV-7255-01A-11D-2012-08	139	133	6	105	4.316547e-02	1	exome+100bp flanks	34834024	28	101	8.038118e-07	2.899464e-06
TCGA-CV-7261-01A-11D-2012-08	156	142	14	109	8.974359e-02	1	exome+100bp flanks	34834024	30	106	8.612269e-07	3.043002e-06
TCGA-CV-7263-01A-11D-2012-08	141	128	13	106	9.219858e-02	1	exome+100bp flanks	34834024	22	105	6.315664e-07	3.014294e-06
TCGA-CV-7406-01A-11D-2078-08	235	229	6	167	2.553191e-02	0	coding only	34834024	62	162	1.779869e-06	4.650625e-06
TCGA-CV-7407-01A-11D-2078-08	158	154	4	111	2.531646e-02	0	coding only	34834024	43	105	1.234425e-06	3.014294e-06
TCGA-CV-7409-01A-31D-2229-08	320	296	24	243	7.500000e-02	1	exome+100bp flanks	34834024	51	239	1.464086e-06	6.861108e-06
TCGA-CV-7410-01A-21D-2078-08	58	51	7	42	1.206897e-01	1	exome+100bp flanks	34834024	9	39	2.583681e-07	1.119595e-06
TCGA-CV-7411-01A-11D-2078-08	141	138	3	105	2.127660e-02	0	coding only	34834024	33	105	9.473496e-07	3.014294e-06
TCGA-CV-7413-01A-11D-2078-08	97	85	12	61	1.237113e-01	1	exome+100bp flanks	34834024	21	60	6.028589e-07	1.722454e-06
TCGA-CV-7414-01A-11D-2078-08	325	318	7	232	2.153846e-02	0	coding only	34834024	84	229	2.411435e-06	6.574032e-06
TCGA-CV-7415-01A-11D-2078-08	103	100	3	69	2.912621e-02	0	coding only	34834024	30	69	8.612269e-07	1.980822e-06
TCGA-CV-7416-01A-11D-2078-08	110	96	14	71	1.272727e-01	1	exome+100bp flanks	34834024	23	67	6.602740e-07	1.923407e-06
TCGA-CV-7418-01A-11D-2078-08	203	193	10	147	4.926108e-02	1	exome+100bp flanks	34834024	45	144	1.291840e-06	4.133889e-06
TCGA-CV-7421-01A-11D-2078-08	92	83	9	53	9.782609e-02	1	exome+100bp flanks	34834024	30	53	8.612269e-07	1.521501e-06
TCGA-CV-7422-01A-21D-2078-08	170	166	4	122	2.352941e-02	0	coding only	34834024	43	120	1.234425e-06	3.444908e-06
TCGA-CV-7423-01A-11D-2078-08	118	110	8	75	6.779661e-02	1	exome+100bp flanks	34834024	34	70	9.760572e-07	2.009530e-06
TCGA-CV-7424-01A-11D-2078-08	234	219	15	161	6.410256e-02	1	exome+100bp flanks	34834024	56	158	1.607624e-06	4.535795e-06
TCGA-CV-7425-01A-11D-2078-08	152	143	9	101	5.921053e-02	1	exome+100bp flanks	34834024	41	96	1.177010e-06	2.755926e-06
TCGA-CV-7427-01A-11D-2078-08	528	517	11	392	2.083333e-02	0	coding only	34834024	124	388	3.559738e-06	1.113854e-05
TCGA-CV-7429-01A-11D-2129-08	73	68	5	50	6.849315e-02	1	exome+100bp flanks	34834024	16	48	4.593210e-07	1.377963e-06
TCGA-CV-7430-01A-11D-2129-08	137	125	12	95	8.759124e-02	1	exome+100bp flanks	34834024	30	92	8.612269e-07	2.641096e-06
TCGA-CV-7432-01A-11D-2129-08	208	191	17	142	8.173077e-02	1	exome+100bp flanks	34834024	48	138	1.377963e-06	3.961644e-06
TCGA-CV-7433-01A-11D-2129-08	138	137	1	101	7.246377e-03	0	coding only	34834024	36	99	1.033472e-06	2.842049e-06
TCGA-CV-7434-01A-11D-2129-08	121	114	7	88	5.785124e-02	1	exome+100bp flanks	34834024	25	84	7.176891e-07	2.411435e-06
TCGA-CV-7435-01A-11D-2129-08	109	99	10	79	9.174312e-02	1	exome+100bp flanks	34834024	20	77	5.741513e-07	2.210482e-06
TCGA-CV-7437-01A-21D-2129-08	180	169	11	127	6.111111e-02	1	exome+100bp flanks	34834024	42	122	1.205718e-06	3.502323e-06
TCGA-CV-7438-01A-21D-2129-08	143	134	9	101	6.293706e-02	1	exome+100bp flanks	34834024	33	97	9.473496e-07	2.784634e-06
TCGA-CV-7440-01A-11D-2129-08	271	249	22	203	8.118081e-02	1	exome+100bp flanks	34834024	45	200	1.291840e-06	5.741513e-06
TCGA-CX-7082-01A-11D-2012-08	124	114	10	87	8.064516e-02	1	exome+100bp flanks	34834024	27	84	7.751042e-07	2.411435e-06
TCGA-CX-7085-01A-21D-2012-08	189	179	10	144	5.291005e-02	1	exome+100bp flanks	34834024	35	143	1.004765e-06	4.105182e-06
TCGA-CX-7086-01A-11D-2078-08	276	263	13	204	4.710145e-02	1	exome+100bp flanks	34834024	59	200	1.693746e-06	5.741513e-06
TCGA-CX-7219-01A-11D-2012-08	157	149	8	115	5.095541e-02	1	exome+100bp flanks	34834024	32	111	9.186421e-07	3.186540e-06
TCGA-D6-6515-01A-21D-1870-08	74	69	5	50	6.756757e-02	1	exome+100bp flanks	34834024	18	49	5.167362e-07	1.406671e-06
TCGA-D6-6516-01A-11D-1870-08	2206	2154	52	1452	2.357208e-02	0	coding only	34834024	691	1427	1.983693e-05	4.096569e-05
TCGA-D6-6517-01A-11D-1870-08	92	84	8	64	8.695652e-02	1	exome+100bp flanks	34834024	19	63	5.454437e-07	1.808577e-06
TCGA-D6-6823-01A-11D-1912-08	127	120	7	101	5.511811e-02	1	exome+100bp flanks	34834024	19	99	5.454437e-07	2.842049e-06
TCGA-D6-6824-01A-11D-1912-08	80	77	3	63	3.750000e-02	1	exome+100bp flanks	34834024	13	61	3.731983e-07	1.751161e-06
TCGA-D6-6825-01A-21D-1912-08	94	87	7	62	7.446809e-02	1	exome+100bp flanks	34834024	25	61	7.176891e-07	1.751161e-06
TCGA-D6-6826-01A-11D-1912-08	129	119	10	90	7.751938e-02	1	exome+100bp flanks	34834024	29	90	8.325194e-07	2.583681e-06
TCGA-D6-6827-01A-11D-1912-08	21	18	3	13	1.428571e-01	1	exome+100bp flanks	34834024	5	13	1.435378e-07	3.731983e-07
TCGA-DQ-5624-01A-01D-1870-08	132	121	11	93	8.333333e-02	1	exome+100bp flanks	34834024	28	93	8.038118e-07	2.669804e-06
TCGA-DQ-5625-01A-01D-1870-08	241	226	15	179	6.224066e-02	1	exome+100bp flanks	34834024	47	176	1.349256e-06	5.052531e-06
TCGA-DQ-5629-01A-01D-1870-08	415	391	24	292	5.783133e-02	1	exome+100bp flanks	34834024	98	285	2.813341e-06	8.181656e-06
TCGA-DQ-5630-01A-01D-1870-08	103	98	5	74	4.854369e-02	1	exome+100bp flanks	34834024	23	72	6.602740e-07	2.066945e-06
TCGA-DQ-5631-01A-01D-1870-08	125	114	11	82	8.800000e-02	1	exome+100bp flanks	34834024	32	79	9.186421e-07	2.267898e-06
TCGA-DQ-7588-01A-11D-2078-08	131	124	7	95	5.343511e-02	1	exome+100bp flanks	34834024	29	93	8.325194e-07	2.669804e-06
TCGA-DQ-7589-01A-11D-2229-08	237	217	20	167	8.438819e-02	1	exome+100bp flanks	34834024	48	166	1.377963e-06	4.765456e-06
TCGA-DQ-7590-01A-11D-2229-08	47	38	9	32	1.914894e-01	1	exome+100bp flanks	34834024	6	30	1.722454e-07	8.612269e-07
TCGA-DQ-7591-01A-11D-2078-08	54	44	10	34	1.851852e-01	1	exome+100bp flanks	34834024	10	34	2.870756e-07	9.760572e-07
TCGA-DQ-7592-01A-11D-2078-08	105	94	11	66	1.047619e-01	1	exome+100bp flanks	34834024	27	65	7.751042e-07	1.865992e-06
TCGA-DQ-7594-01A-11D-2229-08	58	53	5	32	8.620690e-02	1	exome+100bp flanks	34834024	20	31	5.741513e-07	8.899345e-07
TCGA-DQ-7595-01A-11D-2229-08	394	377	17	301	4.314721e-02	1	exome+100bp flanks	34834024	73	295	2.095652e-06	8.468732e-06
TCGA-F7-7848-01A-11D-2129-08	393	375	18	280	4.580153e-02	1	exome+100bp flanks	34834024	93	275	2.669804e-06	7.894580e-06
TCGA-H7-7774-01A-21D-2078-08	182	177	5	138	2.747253e-02	0	coding only	34834024	39	136	1.119595e-06	3.904229e-06
TCGA-HD-7229-01A-11D-2012-08	200	193	7	148	3.500000e-02	1	exome+100bp flanks	34834024	45	145	1.291840e-06	4.162597e-06
TCGA-HD-7753-01A-11D-2078-08	121	110	11	91	9.090909e-02	1	exome+100bp flanks	34834024	19	89	5.454437e-07	2.554973e-06
TCGA-HD-7754-01A-11D-2078-08	83	79	4	54	4.819277e-02	1	exome+100bp flanks	34834024	24	54	6.889816e-07	1.550208e-06
TCGA-HD-7831-01A-11D-2129-08	54	46	8	32	1.481481e-01	1	exome+100bp flanks	34834024	14	32	4.019059e-07	9.186421e-07
TCGA-HD-7832-01A-11D-2129-08	125	119	6	85	4.800000e-02	1	exome+100bp flanks	34834024	34	83	9.760572e-07	2.382728e-06
TCGA-HD-7917-01A-11D-2229-08	85	77	8	59	9.411765e-02	1	exome+100bp flanks	34834024	17	59	4.880286e-07	1.693746e-06
TCGA-HL-7533-01A-11D-2229-08	783	767	16	558	2.043423e-02	0	coding only	34834024	206	555	5.913758e-06	1.593270e-05
TCGA-IQ-7630-01A-11D-2078-08	161	158	3	117	1.863354e-02	0	coding only	34834024	38	114	1.090887e-06	3.272662e-06
TCGA-IQ-7631-01A-11D-2078-08	47	42	5	25	1.063830e-01	1	exome+100bp flanks	34834024	15	24	4.306135e-07	6.889816e-07
TCGA-IQ-7632-01A-11D-2078-08	70	65	5	49	7.142857e-02	1	exome+100bp flanks	34834024	16	45	4.593210e-07	1.291840e-06