Clustering of miRseq mature expression: consensus NMF
Lung Squamous Cell Carcinoma (Primary solid tumor)
23 May 2013  |  analyses__2013_05_23
Maintainer Information
Citation Information
Maintained by Hailei Zhang (Broad Institute)
Cite as Broad Institute TCGA Genome Data Analysis Center (2013): Clustering of miRseq mature expression: consensus NMF. Broad Institute of MIT and Harvard. doi:10.7908/C1MP51BB
- Overview
+ Introduction
- Summary

We filtered the data to 169 most variable miRs. Consensus NMF clustering of 233 samples and 169 miRs identified 3 subtypes with the stability of the clustering increasing for k = 2 to k = 8 and the average silhouette width calculation for selecting the robust clusters.

- Results
+ Silhouette width of each sample in robust cluster
+ miR expression patterns of molecular subtype
+ Consensus and correlation matrix
+ Samples assignment with silhouette width
+ Marker miRs of each subtype
+ Methods & Data