This pipeline computes the correlation between significant copy number variation (cnv) genes and molecular subtypes.
Testing the association between copy number variation of 70 peak regions and 12 molecular subtypes across 985 patients, 621 significant findings detected with Q value < 0.25.
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Amp Peak 1(1p22.3) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 2(1q21.3) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 3(1q44) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 4(3p26.1) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 5(3q26.32) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 6(4q13.3) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 7(5p15.33) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 8(6p23) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 9(6q21) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 10(8p11.23) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Amp Peak 11(8p11.21) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Amp Peak 12(8q24.21) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 13(10p15.1) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 14(10q22.3) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 15(11p13) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 16(11q13.3) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 17(11q14.1) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 18(12p13.33) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 19(12q15) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 20(13q12.3) cnvs correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 21(13q34) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 22(14q21.1) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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Amp Peak 23(15q26.3) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 24(17q12) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 25(17q23.1) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 26(19p13.12) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 27(19q12) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 28(19q13.42) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 29(20q13.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 1(1p36.13) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 2(1p22.1) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Del Peak 3(2q37.3) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 4(3p14.3) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 5(4p16.3) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 6(4q35.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 7(5q11.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 8(5q21.3) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 9(6p25.3) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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Del Peak 10(6q15) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 11(6q27) cnvs correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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Del Peak 12(7p22.3) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 13(7q36.1) cnvs correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 14(8p23.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 15(8p11.21) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 16(9p23) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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Del Peak 17(9p21.3) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 18(9q21.11) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 19(9q34.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 20(10q23.31) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 21(10q26.3) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 22(11p15.5) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 23(11q13.1) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Del Peak 24(11q23.2) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 25(11q25) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 26(12p13.1) cnvs correlated to 'CN_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 27(12q24.31) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 28(13q11) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 29(13q14.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 30(14q24.1) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 31(15q13.1) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 32(16q24.3) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 33(17p12) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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Del Peak 34(17q21.31) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 35(18q23) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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Del Peak 36(19p13.3) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 37(19q13.32) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 38(20p13) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 39(21q11.2) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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Del Peak 40(22q11.1) cnvs correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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Del Peak 41(22q13.31) cnvs correlated to 'CN_CNMF'.
Table 1. Get Full Table Overview of the association between significant copy number variation of 70 regions and 12 molecular subtypes. Shown in the table are P values (Q values). Thresholded by Q value < 0.25, 621 significant findings detected.
|
Molecular subtypes |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
| nCNV (%) | nWild-Type | Chi-square test | Fisher's exact test | Chi-square test | Chi-square test | Fisher's exact test | Fisher's exact test | Chi-square test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
| Amp Peak 1(1p22 3) | 0 (0%) | 763 |
4.05e-14 (2.51e-11) |
3.63e-12 (2.08e-09) |
2.66e-17 (1.79e-14) |
1.09e-18 (7.51e-16) |
0.000139 (0.036) |
1.28e-07 (5.46e-05) |
8.31e-24 (6.3e-21) |
1.79e-19 (1.27e-16) |
4.18e-20 (3e-17) |
2.15e-20 (1.55e-17) |
4.39e-14 (2.72e-11) |
3.56e-12 (2.04e-09) |
| Amp Peak 5(3q26 32) | 0 (0%) | 675 |
5.51e-11 (2.91e-08) |
4.13e-11 (2.2e-08) |
8.19e-38 (6.64e-35) |
1.06e-19 (7.56e-17) |
7.16e-07 (0.000277) |
2.92e-06 (0.00102) |
1.78e-27 (1.39e-24) |
1.61e-24 (1.23e-21) |
9.56e-27 (7.42e-24) |
9.78e-24 (7.41e-21) |
1.08e-18 (7.46e-16) |
6.44e-16 (4.22e-13) |
| Amp Peak 8(6p23) | 0 (0%) | 719 |
1.79e-07 (7.46e-05) |
1.45e-07 (6.09e-05) |
1.67e-38 (1.36e-35) |
2.46e-21 (1.8e-18) |
9.24e-07 (0.000352) |
4.4e-05 (0.0126) |
1.52e-20 (1.1e-17) |
1.54e-14 (9.62e-12) |
7.78e-20 (5.56e-17) |
2.05e-19 (1.45e-16) |
2.13e-13 (1.28e-10) |
7.19e-10 (3.6e-07) |
| Amp Peak 9(6q21) | 0 (0%) | 798 |
1.24e-13 (7.53e-11) |
5.33e-10 (2.7e-07) |
9.77e-49 (8.08e-46) |
6.63e-19 (4.61e-16) |
1.04e-08 (4.82e-06) |
4.64e-07 (0.000185) |
1.03e-28 (8.14e-26) |
6.84e-24 (5.2e-21) |
4.59e-26 (3.54e-23) |
2.41e-24 (1.83e-21) |
2.4e-18 (1.64e-15) |
5.36e-19 (3.74e-16) |
| Amp Peak 12(8q24 21) | 0 (0%) | 359 |
6.27e-16 (4.11e-13) |
1.89e-08 (8.5e-06) |
2.15e-50 (1.78e-47) |
1.15e-27 (9.05e-25) |
4.58e-08 (2e-05) |
9.36e-07 (0.000356) |
5.29e-30 (4.19e-27) |
9.61e-24 (7.29e-21) |
1.28e-28 (1e-25) |
2.62e-26 (2.03e-23) |
9.97e-24 (7.54e-21) |
1.04e-15 (6.74e-13) |
| Amp Peak 13(10p15 1) | 0 (0%) | 708 |
2.47e-21 (1.8e-18) |
5.89e-19 (4.1e-16) |
1.09e-43 (8.94e-41) |
1.53e-27 (1.2e-24) |
7e-11 (3.67e-08) |
2.33e-12 (1.35e-09) |
3.38e-37 (2.74e-34) |
6.77e-33 (5.38e-30) |
2.75e-33 (2.2e-30) |
5.26e-33 (4.19e-30) |
1.41e-18 (9.7e-16) |
4.98e-21 (3.62e-18) |
| Amp Peak 18(12p13 33) | 0 (0%) | 728 |
6.85e-12 (3.85e-09) |
9.63e-12 (5.38e-09) |
9.92e-34 (7.93e-31) |
2.38e-21 (1.74e-18) |
2.7e-08 (1.21e-05) |
2.37e-07 (9.69e-05) |
5.31e-27 (4.12e-24) |
2.66e-20 (1.91e-17) |
3.78e-22 (2.8e-19) |
1.21e-21 (8.88e-19) |
3.64e-20 (2.61e-17) |
5.94e-14 (3.66e-11) |
| Amp Peak 21(13q34) | 0 (0%) | 819 |
1.45e-09 (7.11e-07) |
2.67e-09 (1.29e-06) |
2.61e-19 (1.83e-16) |
6.52e-14 (4e-11) |
8.21e-06 (0.0027) |
5.1e-08 (2.22e-05) |
4.72e-20 (3.38e-17) |
7.98e-21 (5.8e-18) |
1.31e-22 (9.82e-20) |
1.69e-23 (1.28e-20) |
2.53e-11 (1.38e-08) |
4.44e-14 (2.74e-11) |
| Amp Peak 27(19q12) | 0 (0%) | 734 |
4.35e-12 (2.48e-09) |
9.44e-11 (4.92e-08) |
1.88e-27 (1.47e-24) |
1.29e-12 (7.54e-10) |
6.19e-07 (0.000242) |
9.68e-07 (0.000364) |
4.73e-23 (3.54e-20) |
1.94e-18 (1.33e-15) |
4.21e-18 (2.86e-15) |
6.62e-18 (4.49e-15) |
1.54e-12 (8.97e-10) |
1.31e-11 (7.22e-09) |
| Del Peak 3(2q37 3) | 0 (0%) | 702 |
1.51e-06 (0.000552) |
3.28e-09 (1.57e-06) |
2.31e-22 (1.72e-19) |
2.98e-11 (1.62e-08) |
1.03e-08 (4.78e-06) |
1.11e-07 (4.73e-05) |
1.63e-11 (9e-09) |
1.29e-11 (7.13e-09) |
6.95e-11 (3.65e-08) |
5.85e-10 (2.94e-07) |
1.73e-13 (1.05e-10) |
1.06e-05 (0.0034) |
| Del Peak 4(3p14 3) | 0 (0%) | 685 |
3.85e-11 (2.07e-08) |
5.41e-08 (2.34e-05) |
7.55e-35 (6.05e-32) |
3.98e-16 (2.62e-13) |
2.51e-09 (1.22e-06) |
1.08e-05 (0.00348) |
1.56e-19 (1.11e-16) |
3.75e-13 (2.25e-10) |
2.75e-16 (1.81e-13) |
3.92e-15 (2.48e-12) |
7.21e-11 (3.77e-08) |
2.58e-10 (1.32e-07) |
| Del Peak 5(4p16 3) | 0 (0%) | 679 |
2.7e-11 (1.47e-08) |
2.23e-11 (1.22e-08) |
3.94e-31 (3.13e-28) |
9.99e-13 (5.95e-10) |
4.6e-07 (0.000184) |
1.62e-06 (0.000591) |
2.63e-23 (1.98e-20) |
4.16e-23 (3.12e-20) |
1.56e-18 (1.07e-15) |
1.96e-18 (1.34e-15) |
3.36e-15 (2.14e-12) |
5.39e-15 (3.4e-12) |
| Del Peak 6(4q35 2) | 0 (0%) | 675 |
1.17e-06 (0.000436) |
1.24e-06 (0.00046) |
4.27e-40 (3.49e-37) |
6.31e-14 (3.87e-11) |
1.51e-08 (6.91e-06) |
1.78e-06 (0.000642) |
3.21e-23 (2.41e-20) |
6.74e-19 (4.68e-16) |
5.94e-19 (4.13e-16) |
1.19e-19 (8.46e-17) |
4.2e-15 (2.66e-12) |
2e-13 (1.21e-10) |
| Del Peak 7(5q11 2) | 0 (0%) | 729 |
2.5e-27 (1.95e-24) |
6.92e-25 (5.29e-22) |
3.86e-75 (3.24e-72) |
4.36e-44 (3.59e-41) |
3.33e-16 (2.19e-13) |
7.43e-19 (5.15e-16) |
7.27e-58 (6.07e-55) |
6.03e-54 (5.02e-51) |
1.55e-50 (1.28e-47) |
3.59e-55 (2.99e-52) |
3.49e-35 (2.8e-32) |
3.08e-36 (2.48e-33) |
| Del Peak 8(5q21 3) | 0 (0%) | 739 |
3.82e-29 (3.01e-26) |
2.12e-26 (1.64e-23) |
1.48e-87 (1.24e-84) |
8.44e-53 (7.01e-50) |
2.6e-15 (1.66e-12) |
8.97e-16 (5.82e-13) |
2.08e-66 (1.74e-63) |
1.21e-58 (1.01e-55) |
4.12e-56 (3.43e-53) |
2.13e-63 (1.78e-60) |
1.16e-39 (9.46e-37) |
5.97e-44 (4.92e-41) |
| Del Peak 19(9q34 2) | 0 (0%) | 720 |
1.35e-07 (5.7e-05) |
4.43e-08 (1.94e-05) |
1.98e-35 (1.6e-32) |
3.68e-22 (2.73e-19) |
2.47e-05 (0.00749) |
0.000733 (0.167) |
6.46e-26 (4.97e-23) |
1.02e-18 (7.04e-16) |
2.4e-23 (1.81e-20) |
3.26e-26 (2.52e-23) |
1.07e-16 (7.08e-14) |
6.17e-17 (4.11e-14) |
| Del Peak 20(10q23 31) | 0 (0%) | 702 |
2.45e-05 (0.00746) |
5.63e-05 (0.0158) |
4.87e-22 (3.6e-19) |
5.74e-12 (3.23e-09) |
1.9e-07 (7.88e-05) |
7.37e-05 (0.0204) |
2.1e-15 (1.34e-12) |
1.06e-12 (6.32e-10) |
3.72e-11 (2e-08) |
2.82e-14 (1.76e-11) |
7.76e-10 (3.87e-07) |
6.77e-09 (3.18e-06) |
| Del Peak 21(10q26 3) | 0 (0%) | 698 |
1.01e-08 (4.68e-06) |
2.75e-07 (0.000112) |
3.2e-25 (2.45e-22) |
8.14e-14 (4.98e-11) |
3.06e-08 (1.36e-05) |
8.25e-07 (0.000316) |
3.22e-20 (2.31e-17) |
1.86e-17 (1.25e-14) |
7.44e-15 (4.67e-12) |
2.12e-19 (1.49e-16) |
1.12e-12 (6.64e-10) |
5.7e-12 (3.22e-09) |
| Del Peak 22(11p15 5) | 0 (0%) | 704 |
3.55e-07 (0.000144) |
2.1e-07 (8.68e-05) |
1.89e-36 (1.53e-33) |
4.7e-14 (2.89e-11) |
1.27e-09 (6.26e-07) |
1.65e-06 (6e-04) |
4.07e-17 (2.73e-14) |
3.46e-15 (2.19e-12) |
1.8e-19 (1.28e-16) |
3.48e-17 (2.34e-14) |
2.07e-13 (1.25e-10) |
1.6e-12 (9.28e-10) |
| Del Peak 27(12q24 31) | 0 (0%) | 806 |
5.25e-10 (2.66e-07) |
8.48e-10 (4.21e-07) |
1.48e-22 (1.1e-19) |
5.16e-19 (3.61e-16) |
1.14e-05 (0.00365) |
7.45e-07 (0.000287) |
4.41e-19 (3.09e-16) |
1.84e-17 (1.24e-14) |
5.64e-12 (3.19e-09) |
2.4e-13 (1.45e-10) |
1.41e-09 (6.9e-07) |
7.62e-11 (3.98e-08) |
| Del Peak 30(14q24 1) | 0 (0%) | 674 |
1.18e-13 (7.18e-11) |
1.61e-08 (7.36e-06) |
2.98e-40 (2.43e-37) |
9.21e-19 (6.37e-16) |
4.19e-07 (0.000168) |
3.69e-06 (0.00126) |
2.75e-33 (2.2e-30) |
2.53e-21 (1.84e-18) |
6.54e-22 (4.82e-19) |
4.97e-24 (3.79e-21) |
2.66e-18 (1.81e-15) |
1.14e-14 (7.11e-12) |
| Del Peak 31(15q13 1) | 0 (0%) | 649 |
4.93e-07 (0.000196) |
1.62e-07 (6.81e-05) |
1.24e-42 (1.02e-39) |
2.91e-14 (1.81e-11) |
0.000193 (0.0487) |
2.32e-05 (0.0071) |
1.6e-21 (1.17e-18) |
2.48e-20 (1.79e-17) |
8.06e-21 (5.84e-18) |
1.89e-21 (1.39e-18) |
2.65e-17 (1.78e-14) |
7.67e-16 (4.99e-13) |
| Del Peak 32(16q24 3) | 0 (0%) | 352 |
9.32e-17 (6.21e-14) |
2.67e-14 (1.67e-11) |
1.26e-12 (7.38e-10) |
3.67e-12 (2.1e-09) |
1.14e-09 (5.67e-07) |
3.45e-11 (1.86e-08) |
2.38e-29 (1.88e-26) |
1.35e-24 (1.03e-21) |
1.43e-18 (9.85e-16) |
4.01e-22 (2.96e-19) |
2.6e-12 (1.5e-09) |
6.38e-13 (3.81e-10) |
| Del Peak 34(17q21 31) | 0 (0%) | 645 |
1.97e-15 (1.26e-12) |
2.29e-07 (9.4e-05) |
1.64e-26 (1.27e-23) |
8.14e-14 (4.98e-11) |
1.86e-11 (1.02e-08) |
3.12e-11 (1.7e-08) |
2.01e-35 (1.61e-32) |
8.06e-21 (5.84e-18) |
4.9e-15 (3.1e-12) |
1.5e-12 (8.75e-10) |
1.24e-12 (7.28e-10) |
3.07e-12 (1.76e-09) |
| Del Peak 36(19p13 3) | 0 (0%) | 660 |
5.5e-11 (2.91e-08) |
2.25e-08 (1.01e-05) |
1.92e-48 (1.59e-45) |
1.44e-21 (1.06e-18) |
4.63e-06 (0.00156) |
2.02e-05 (0.00624) |
3.43e-27 (2.67e-24) |
3.27e-19 (2.3e-16) |
1.01e-25 (7.78e-23) |
3.83e-28 (3e-25) |
5.14e-17 (3.43e-14) |
7.53e-12 (4.22e-09) |
| Del Peak 37(19q13 32) | 0 (0%) | 792 |
8.89e-07 (0.00034) |
1.37e-05 (0.00426) |
2.29e-21 (1.68e-18) |
6.73e-11 (3.54e-08) |
0.000783 (0.176) |
4.95e-05 (0.0141) |
6.95e-15 (4.38e-12) |
1.03e-12 (6.12e-10) |
2.97e-14 (1.84e-11) |
8.49e-16 (5.52e-13) |
5.55e-12 (3.14e-09) |
7.55e-10 (3.77e-07) |
| Amp Peak 26(19p13 12) | 0 (0%) | 778 |
6.52e-06 (0.00217) |
5.01e-05 (0.0142) |
1.96e-15 (1.26e-12) |
2.18e-06 (0.000775) |
0.000125 (0.0329) |
0.00163 (0.348) |
4.1e-11 (2.19e-08) |
6.64e-08 (2.87e-05) |
1.62e-08 (7.38e-06) |
3.58e-10 (1.82e-07) |
4.53e-06 (0.00154) |
7.44e-06 (0.00246) |
| Amp Peak 29(20q13 2) | 0 (0%) | 488 |
1.81e-10 (9.33e-08) |
3.67e-05 (0.0107) |
4.55e-51 (3.78e-48) |
3.2e-23 (2.4e-20) |
0.000604 (0.141) |
0.0154 (1.00) |
1.88e-18 (1.29e-15) |
1.57e-12 (9.16e-10) |
1.19e-12 (7.04e-10) |
3.96e-11 (2.12e-08) |
3.08e-08 (1.37e-05) |
0.000451 (0.107) |
| Amp Peak 6(4q13 3) | 0 (0%) | 835 |
3.22e-05 (0.00948) |
4.19e-05 (0.0121) |
1.7e-17 (1.15e-14) |
3.03e-05 (0.00893) |
0.0313 (1.00) |
0.424 (1.00) |
3.3e-11 (1.78e-08) |
3.72e-07 (0.00015) |
4.34e-08 (1.9e-05) |
3.86e-11 (2.07e-08) |
5.52e-05 (0.0155) |
9.68e-05 (0.0259) |
| Del Peak 12(7p22 3) | 0 (0%) | 860 |
0.00104 (0.23) |
7.95e-05 (0.0215) |
1.52e-15 (9.81e-13) |
1.63e-08 (7.42e-06) |
0.0214 (1.00) |
0.00553 (1.00) |
3.96e-10 (2.01e-07) |
5.97e-10 (3e-07) |
1.24e-12 (7.29e-10) |
1.1e-12 (6.54e-10) |
3.51e-09 (1.68e-06) |
5.25e-06 (0.00176) |
| Del Peak 14(8p23 2) | 0 (0%) | 473 |
1.61e-09 (7.87e-07) |
9.89e-06 (0.0032) |
1.02e-33 (8.18e-31) |
2.07e-13 (1.25e-10) |
0.00955 (1.00) |
0.0341 (1.00) |
1.9e-19 (1.34e-16) |
2.61e-12 (1.5e-09) |
1.11e-12 (6.56e-10) |
1.37e-15 (8.85e-13) |
3.98e-08 (1.75e-05) |
2.97e-07 (0.000121) |
| Del Peak 17(9p21 3) | 0 (0%) | 658 |
2e-06 (0.000716) |
4.31e-05 (0.0124) |
3.26e-38 (2.65e-35) |
1.01e-16 (6.75e-14) |
0.00341 (0.672) |
0.444 (1.00) |
1.5e-16 (9.9e-14) |
1.74e-10 (8.98e-08) |
1.22e-10 (6.32e-08) |
2.47e-13 (1.49e-10) |
1.17e-05 (0.00372) |
8.14e-05 (0.0219) |
| Del Peak 18(9q21 11) | 0 (0%) | 722 |
0.0061 (1.00) |
2.17e-05 (0.00667) |
3.73e-22 (2.76e-19) |
1.3e-11 (7.18e-09) |
1.04e-05 (0.00336) |
0.00653 (1.00) |
5.21e-11 (2.76e-08) |
6.26e-09 (2.95e-06) |
4.95e-12 (2.81e-09) |
7.39e-15 (4.65e-12) |
5.32e-07 (0.000209) |
9.63e-07 (0.000363) |
| Del Peak 28(13q11) | 0 (0%) | 595 |
9.2e-05 (0.0246) |
0.000958 (0.215) |
4.27e-31 (3.39e-28) |
6.93e-09 (3.25e-06) |
0.14 (1.00) |
0.171 (1.00) |
7.18e-09 (3.35e-06) |
1.23e-09 (6.07e-07) |
1.66e-06 (0.000602) |
2.15e-06 (0.000768) |
2.66e-08 (1.19e-05) |
4.51e-06 (0.00153) |
| Del Peak 29(13q14 2) | 0 (0%) | 538 |
6.7e-05 (0.0186) |
2.5e-05 (0.00756) |
7.35e-41 (6.03e-38) |
1.31e-08 (6e-06) |
0.538 (1.00) |
0.111 (1.00) |
7.76e-10 (3.87e-07) |
1.15e-09 (5.7e-07) |
1.99e-09 (9.71e-07) |
5.25e-09 (2.5e-06) |
8.03e-10 (3.99e-07) |
2.39e-06 (0.000847) |
| Del Peak 38(20p13) | 0 (0%) | 841 |
4.49e-06 (0.00153) |
6.53e-05 (0.0182) |
2.38e-16 (1.57e-13) |
4.52e-13 (2.7e-10) |
0.00154 (0.329) |
0.0119 (1.00) |
3.18e-15 (2.03e-12) |
1.07e-10 (5.55e-08) |
8.71e-15 (5.46e-12) |
1.36e-17 (9.2e-15) |
1.59e-10 (8.25e-08) |
5.8e-10 (2.92e-07) |
| Amp Peak 4(3p26 1) | 0 (0%) | 784 |
0.00647 (1.00) |
0.00103 (0.229) |
1.21e-16 (8.01e-14) |
7.63e-07 (0.000294) |
0.00573 (1.00) |
0.00869 (1.00) |
3.15e-08 (1.39e-05) |
3.08e-09 (1.48e-06) |
5.07e-11 (2.7e-08) |
5.89e-09 (2.79e-06) |
9.02e-06 (0.00294) |
0.000753 (0.171) |
| Amp Peak 23(15q26 3) | 0 (0%) | 808 |
4.52e-07 (0.000181) |
0.00285 (0.571) |
5.4e-16 (3.55e-13) |
0.000123 (0.0325) |
0.00028 (0.0689) |
0.0593 (1.00) |
6.56e-09 (3.09e-06) |
1.19e-06 (0.000442) |
1.02e-08 (4.75e-06) |
1.62e-10 (8.36e-08) |
0.00145 (0.312) |
0.000401 (0.0966) |
| Del Peak 16(9p23) | 0 (0%) | 691 |
6.98e-08 (3e-05) |
8.19e-06 (0.0027) |
6.67e-38 (5.42e-35) |
1.92e-19 (1.35e-16) |
0.0111 (1.00) |
0.446 (1.00) |
1.72e-19 (1.22e-16) |
1.09e-08 (5e-06) |
6.56e-07 (0.000256) |
2.34e-12 (1.35e-09) |
0.000127 (0.0331) |
0.0101 (1.00) |
| Amp Peak 7(5p15 33) | 0 (0%) | 628 |
0.012 (1.00) |
0.00281 (0.569) |
3.22e-22 (2.4e-19) |
7.05e-09 (3.3e-06) |
0.082 (1.00) |
0.581 (1.00) |
1.99e-06 (0.000713) |
3.03e-09 (1.47e-06) |
1.38e-07 (5.81e-05) |
7.8e-07 (0.000299) |
1.58e-05 (0.0049) |
3.63e-06 (0.00125) |
| Amp Peak 15(11p13) | 0 (0%) | 781 |
0.0761 (1.00) |
0.0212 (1.00) |
4.68e-17 (3.13e-14) |
5.19e-07 (0.000205) |
0.0728 (1.00) |
0.112 (1.00) |
2.26e-10 (1.16e-07) |
5.17e-07 (0.000205) |
3.84e-09 (1.83e-06) |
1.1e-11 (6.14e-09) |
7.39e-06 (0.00245) |
0.00011 (0.0291) |
| Amp Peak 17(11q14 1) | 0 (0%) | 739 |
0.007 (1.00) |
0.0697 (1.00) |
4.39e-19 (3.08e-16) |
0.000127 (0.0331) |
0.148 (1.00) |
0.199 (1.00) |
1.92e-06 (0.000691) |
8.31e-06 (0.00273) |
3.88e-07 (0.000156) |
1.4e-07 (5.88e-05) |
0.000146 (0.0376) |
0.000288 (0.0707) |
| Amp Peak 19(12q15) | 0 (0%) | 737 |
3.35e-07 (0.000136) |
5.01e-06 (0.00169) |
3.52e-29 (2.77e-26) |
1.54e-13 (9.39e-11) |
0.188 (1.00) |
0.0652 (1.00) |
1.28e-11 (7.13e-09) |
6.73e-07 (0.000262) |
3.8e-05 (0.0111) |
2.48e-06 (0.00087) |
0.00664 (1.00) |
0.00295 (0.585) |
| Amp Peak 25(17q23 1) | 0 (0%) | 588 |
6.72e-16 (4.4e-13) |
0.00033 (0.0802) |
1.11e-42 (9.1e-40) |
1.82e-10 (9.38e-08) |
0.191 (1.00) |
0.334 (1.00) |
4.86e-23 (3.64e-20) |
1.38e-06 (0.000505) |
3.21e-08 (1.42e-05) |
3.29e-11 (1.78e-08) |
0.00209 (0.438) |
0.037 (1.00) |
| Del Peak 1(1p36 13) | 0 (0%) | 578 |
7.82e-05 (0.0214) |
0.00012 (0.0319) |
7.61e-31 (6.03e-28) |
1.59e-12 (9.21e-10) |
0.00726 (1.00) |
0.0805 (1.00) |
5.3e-09 (2.52e-06) |
1.12e-06 (0.000422) |
2.49e-06 (0.00087) |
0.000166 (0.0424) |
0.00669 (1.00) |
0.119 (1.00) |
| Del Peak 15(8p11 21) | 0 (0%) | 797 |
0.000194 (0.0489) |
0.00476 (0.885) |
1.19e-12 (7.04e-10) |
0.0313 (1.00) |
0.0465 (1.00) |
0.0191 (1.00) |
1.79e-12 (1.04e-09) |
4.61e-05 (0.0131) |
9.37e-07 (0.000356) |
1.74e-07 (7.28e-05) |
1.32e-06 (0.000485) |
4.15e-05 (0.0121) |
| Del Peak 33(17p12) | 0 (0%) | 394 |
1.95e-11 (1.07e-08) |
0.168 (1.00) |
3.78e-27 (2.94e-24) |
1.69e-08 (7.65e-06) |
8.07e-05 (0.0218) |
0.00775 (1.00) |
6.36e-18 (4.32e-15) |
0.00257 (0.53) |
2.3e-06 (0.000818) |
9e-06 (0.00294) |
0.000325 (0.0792) |
0.00485 (0.897) |
| Del Peak 35(18q23) | 0 (0%) | 664 |
0.000183 (0.0464) |
0.0629 (1.00) |
7.46e-16 (4.86e-13) |
2.54e-10 (1.3e-07) |
0.00413 (0.788) |
0.581 (1.00) |
4.43e-12 (2.52e-09) |
7.5e-05 (0.0205) |
2.83e-05 (0.00845) |
2.01e-05 (0.00623) |
6.08e-07 (0.000238) |
0.00135 (0.293) |
| Amp Peak 14(10q22 3) | 0 (0%) | 846 |
9.27e-06 (0.00301) |
0.143 (1.00) |
2.25e-09 (1.1e-06) |
0.00276 (0.563) |
0.0025 (0.518) |
0.0211 (1.00) |
1.21e-11 (6.72e-09) |
5.46e-07 (0.000215) |
3.04e-06 (0.00105) |
0.00702 (1.00) |
1.18e-05 (0.00374) |
0.00066 (0.152) |
| Amp Peak 16(11q13 3) | 0 (0%) | 621 |
0.000715 (0.165) |
0.0117 (1.00) |
1.57e-40 (1.29e-37) |
2.92e-10 (1.49e-07) |
0.966 (1.00) |
0.146 (1.00) |
5.57e-10 (2.81e-07) |
0.000983 (0.219) |
0.000222 (0.0553) |
2.6e-05 (0.00781) |
0.0197 (1.00) |
0.272 (1.00) |
| Amp Peak 24(17q12) | 0 (0%) | 674 |
1.1e-15 (7.11e-13) |
1.34e-05 (0.00417) |
3.76e-36 (3.03e-33) |
7.95e-09 (3.7e-06) |
0.049 (1.00) |
0.00821 (1.00) |
8.01e-26 (6.16e-23) |
2.4e-05 (0.00732) |
0.00443 (0.837) |
3.76e-07 (0.000152) |
0.0487 (1.00) |
0.162 (1.00) |
| Amp Peak 28(19q13 42) | 0 (0%) | 736 |
0.00013 (0.0337) |
0.00267 (0.548) |
3.23e-15 (2.06e-12) |
3.02e-06 (0.00105) |
0.000605 (0.141) |
0.0197 (1.00) |
1.47e-06 (0.000537) |
0.00555 (1.00) |
0.000126 (0.0331) |
0.000427 (0.102) |
0.191 (1.00) |
0.46 (1.00) |
| Del Peak 13(7q36 1) | 0 (0%) | 801 |
0.00992 (1.00) |
0.022 (1.00) |
5.11e-11 (2.71e-08) |
0.0733 (1.00) |
0.551 (1.00) |
0.0562 (1.00) |
2.92e-05 (0.00867) |
0.00023 (0.0571) |
1.39e-08 (6.37e-06) |
1.33e-07 (5.63e-05) |
9.61e-07 (0.000363) |
2.43e-06 (0.000856) |
| Amp Peak 2(1q21 3) | 0 (0%) | 275 |
1.25e-06 (0.000462) |
0.000537 (0.127) |
5.14e-08 (2.23e-05) |
2.2e-07 (9.06e-05) |
0.0586 (1.00) |
0.00703 (1.00) |
2.9e-09 (1.4e-06) |
0.00468 (0.88) |
0.00171 (0.362) |
2.51e-05 (0.00756) |
0.00972 (1.00) |
0.0365 (1.00) |
| Amp Peak 22(14q21 1) | 0 (0%) | 786 |
7.91e-05 (0.0215) |
0.00208 (0.437) |
4.07e-13 (2.44e-10) |
2.93e-05 (0.00868) |
0.0823 (1.00) |
0.0385 (1.00) |
2.73e-08 (1.22e-05) |
1.11e-05 (0.00356) |
2.82e-05 (0.00842) |
0.0301 (1.00) |
0.098 (1.00) |
0.347 (1.00) |
| Del Peak 10(6q15) | 0 (0%) | 670 |
2.42e-06 (0.000856) |
0.00128 (0.281) |
4.52e-35 (3.63e-32) |
3.06e-09 (1.48e-06) |
0.456 (1.00) |
0.0875 (1.00) |
3.2e-11 (1.74e-08) |
4.15e-05 (0.0121) |
0.00187 (0.395) |
3.16e-06 (0.00109) |
0.0106 (1.00) |
0.00134 (0.293) |
| Del Peak 24(11q23 2) | 0 (0%) | 497 |
1.86e-07 (7.72e-05) |
0.0146 (1.00) |
5.01e-39 (4.08e-36) |
2.95e-14 (1.83e-11) |
0.992 (1.00) |
0.475 (1.00) |
1.68e-15 (1.08e-12) |
0.000753 (0.171) |
0.0172 (1.00) |
7.06e-07 (0.000274) |
0.0259 (1.00) |
0.11 (1.00) |
| Amp Peak 3(1q44) | 0 (0%) | 275 |
1.22e-05 (0.00384) |
0.102 (1.00) |
6.67e-08 (2.88e-05) |
1.17e-06 (0.000437) |
0.864 (1.00) |
0.324 (1.00) |
1.05e-08 (4.84e-06) |
0.924 (1.00) |
0.685 (1.00) |
0.000564 (0.133) |
0.27 (1.00) |
0.0664 (1.00) |
| Amp Peak 10(8p11 23) | 0 (0%) | 611 |
1.27e-06 (0.000468) |
0.00415 (0.789) |
3.96e-25 (3.03e-22) |
5.89e-11 (3.11e-08) |
0.0399 (1.00) |
0.00473 (0.884) |
8.74e-12 (4.9e-09) |
7.67e-08 (3.29e-05) |
0.342 (1.00) |
0.0292 (1.00) |
0.694 (1.00) |
0.276 (1.00) |
| Amp Peak 20(13q12 3) | 0 (0%) | 851 |
0.0686 (1.00) |
0.0395 (1.00) |
1.19e-05 (0.00374) |
0.0272 (1.00) |
0.0155 (1.00) |
0.142 (1.00) |
6.49e-06 (0.00217) |
4.48e-05 (0.0128) |
1.15e-05 (0.00366) |
5.11e-05 (0.0144) |
0.11 (1.00) |
0.127 (1.00) |
| Del Peak 2(1p22 1) | 0 (0%) | 660 |
0.00343 (0.672) |
0.000233 (0.0574) |
8.39e-21 (6.07e-18) |
1.31e-07 (5.58e-05) |
0.0231 (1.00) |
0.049 (1.00) |
3.47e-09 (1.66e-06) |
1.8e-08 (8.14e-06) |
0.00234 (0.486) |
0.00385 (0.747) |
0.368 (1.00) |
0.445 (1.00) |
| Del Peak 25(11q25) | 0 (0%) | 531 |
0.00072 (0.165) |
0.634 (1.00) |
2.14e-36 (1.73e-33) |
2.17e-11 (1.19e-08) |
0.126 (1.00) |
0.707 (1.00) |
1.37e-11 (7.58e-09) |
0.137 (1.00) |
0.0834 (1.00) |
7.44e-05 (0.0205) |
0.265 (1.00) |
0.337 (1.00) |
| Amp Peak 11(8p11 21) | 0 (0%) | 603 |
0.0516 (1.00) |
0.067 (1.00) |
1.79e-22 (1.33e-19) |
9.23e-08 (3.95e-05) |
0.791 (1.00) |
0.633 (1.00) |
2.27e-08 (1.02e-05) |
2.09e-07 (8.67e-05) |
0.0391 (1.00) |
0.00769 (1.00) |
0.00403 (0.774) |
0.0165 (1.00) |
| Del Peak 23(11q13 1) | 0 (0%) | 777 |
0.00395 (0.762) |
0.0958 (1.00) |
6.75e-16 (4.4e-13) |
4.04e-08 (1.77e-05) |
0.331 (1.00) |
0.393 (1.00) |
6.01e-09 (2.84e-06) |
0.000219 (0.0549) |
0.199 (1.00) |
0.091 (1.00) |
0.123 (1.00) |
0.13 (1.00) |
| Del Peak 26(12p13 1) | 0 (0%) | 818 |
0.0315 (1.00) |
0.0843 (1.00) |
0.0002 (0.0503) |
0.0175 (1.00) |
0.222 (1.00) |
0.042 (1.00) |
0.00902 (1.00) |
0.00285 (0.571) |
7.45e-05 (0.0205) |
4.48e-06 (0.00153) |
0.00142 (0.306) |
0.000504 (0.12) |
| Del Peak 39(21q11 2) | 0 (0%) | 793 |
0.000341 (0.0825) |
0.0505 (1.00) |
4.09e-12 (2.33e-09) |
1.32e-05 (0.00413) |
0.225 (1.00) |
0.502 (1.00) |
5.67e-06 (0.0019) |
0.023 (1.00) |
0.00364 (0.711) |
0.00284 (0.571) |
0.0271 (1.00) |
0.513 (1.00) |
| Del Peak 9(6p25 3) | 0 (0%) | 799 |
0.347 (1.00) |
0.449 (1.00) |
3.08e-08 (1.37e-05) |
0.000166 (0.0424) |
0.439 (1.00) |
0.597 (1.00) |
0.000615 (0.143) |
0.0281 (1.00) |
0.0578 (1.00) |
0.0845 (1.00) |
0.0185 (1.00) |
0.0151 (1.00) |
| Del Peak 11(6q27) | 0 (0%) | 653 |
0.0354 (1.00) |
0.368 (1.00) |
9.1e-16 (5.9e-13) |
0.00282 (0.57) |
0.0678 (1.00) |
0.675 (1.00) |
0.00108 (0.237) |
0.68 (1.00) |
0.111 (1.00) |
0.0324 (1.00) |
0.0649 (1.00) |
0.475 (1.00) |
| Del Peak 40(22q11 1) | 0 (0%) | 567 |
0.333 (1.00) |
0.314 (1.00) |
3.04e-06 (0.00105) |
0.000449 (0.107) |
0.226 (1.00) |
0.14 (1.00) |
0.299 (1.00) |
0.0129 (1.00) |
0.156 (1.00) |
0.55 (1.00) |
0.816 (1.00) |
0.793 (1.00) |
| Del Peak 41(22q13 31) | 0 (0%) | 532 |
0.21 (1.00) |
0.181 (1.00) |
2.21e-07 (9.07e-05) |
0.00531 (0.976) |
0.186 (1.00) |
0.0714 (1.00) |
0.0994 (1.00) |
0.0167 (1.00) |
0.063 (1.00) |
0.502 (1.00) |
0.661 (1.00) |
0.747 (1.00) |
P value = 4.05e-14 (Chi-square test), Q value = 2.5e-11
Table S1. Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| AMP PEAK 1(1P22.3) CNV | 4 | 2 | 14 | 52 | 24 | 16 | 2 | 2 |
| AMP PEAK 1(1P22.3) WILD-TYPE | 17 | 34 | 105 | 44 | 85 | 56 | 18 | 38 |
Figure S1. Get High-res Image Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 3.63e-12 (Fisher's exact test), Q value = 2.1e-09
Table S2. Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| AMP PEAK 1(1P22.3) CNV | 10 | 57 | 49 |
| AMP PEAK 1(1P22.3) WILD-TYPE | 112 | 68 | 217 |
Figure S2. Get High-res Image Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 2.66e-17 (Chi-square test), Q value = 1.8e-14
Table S3. Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 1(1P22.3) CNV | 48 | 31 | 26 | 101 | 16 |
| AMP PEAK 1(1P22.3) WILD-TYPE | 326 | 201 | 53 | 151 | 32 |
Figure S3. Get High-res Image Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.09e-18 (Chi-square test), Q value = 7.5e-16
Table S4. Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 1(1P22.3) CNV | 61 | 25 | 24 | 16 | 2 | 19 |
| AMP PEAK 1(1P22.3) WILD-TYPE | 48 | 130 | 82 | 120 | 42 | 94 |
Figure S4. Get High-res Image Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.000139 (Fisher's exact test), Q value = 0.036
Table S5. Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| AMP PEAK 1(1P22.3) CNV | 52 | 28 | 16 |
| AMP PEAK 1(1P22.3) WILD-TYPE | 95 | 105 | 101 |
Figure S5. Get High-res Image Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 1.28e-07 (Fisher's exact test), Q value = 5.5e-05
Table S6. Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| AMP PEAK 1(1P22.3) CNV | 32 | 12 | 52 |
| AMP PEAK 1(1P22.3) WILD-TYPE | 129 | 98 | 74 |
Figure S6. Get High-res Image Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 8.31e-24 (Chi-square test), Q value = 6.3e-21
Table S7. Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 1(1P22.3) CNV | 90 | 11 | 47 | 37 | 27 | 5 | 1 |
| AMP PEAK 1(1P22.3) WILD-TYPE | 85 | 128 | 170 | 117 | 197 | 42 | 14 |
Figure S7. Get High-res Image Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.79e-19 (Fisher's exact test), Q value = 1.3e-16
Table S8. Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 1(1P22.3) CNV | 32 | 108 | 78 |
| AMP PEAK 1(1P22.3) WILD-TYPE | 259 | 138 | 356 |
Figure S8. Get High-res Image Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 4.18e-20 (Fisher's exact test), Q value = 3e-17
Table S9. Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| AMP PEAK 1(1P22.3) CNV | 38 | 60 | 121 |
| AMP PEAK 1(1P22.3) WILD-TYPE | 236 | 353 | 158 |
Figure S9. Get High-res Image Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.15e-20 (Fisher's exact test), Q value = 1.6e-17
Table S10. Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| AMP PEAK 1(1P22.3) CNV | 104 | 71 | 44 |
| AMP PEAK 1(1P22.3) WILD-TYPE | 121 | 305 | 321 |
Figure S10. Get High-res Image Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 4.39e-14 (Fisher's exact test), Q value = 2.7e-11
Table S11. Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| AMP PEAK 1(1P22.3) CNV | 34 | 30 | 84 |
| AMP PEAK 1(1P22.3) WILD-TYPE | 216 | 180 | 112 |
Figure S11. Get High-res Image Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 3.56e-12 (Fisher's exact test), Q value = 2e-09
Table S12. Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| AMP PEAK 1(1P22.3) CNV | 25 | 45 | 78 |
| AMP PEAK 1(1P22.3) WILD-TYPE | 135 | 266 | 107 |
Figure S12. Get High-res Image Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.25e-06 (Chi-square test), Q value = 0.00046
Table S13. Gene #2: 'Amp Peak 2(1q21.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| AMP PEAK 2(1Q21.3) CNV | 16 | 19 | 75 | 88 | 88 | 54 | 10 | 29 |
| AMP PEAK 2(1Q21.3) WILD-TYPE | 5 | 17 | 44 | 8 | 21 | 18 | 10 | 11 |
Figure S13. Get High-res Image Gene #2: 'Amp Peak 2(1q21.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.000537 (Fisher's exact test), Q value = 0.13
Table S14. Gene #2: 'Amp Peak 2(1q21.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| AMP PEAK 2(1Q21.3) CNV | 76 | 105 | 198 |
| AMP PEAK 2(1Q21.3) WILD-TYPE | 46 | 20 | 68 |
Figure S14. Get High-res Image Gene #2: 'Amp Peak 2(1q21.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 5.14e-08 (Chi-square test), Q value = 2.2e-05
Table S15. Gene #2: 'Amp Peak 2(1q21.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 2(1Q21.3) CNV | 238 | 171 | 76 | 193 | 32 |
| AMP PEAK 2(1Q21.3) WILD-TYPE | 136 | 61 | 3 | 59 | 16 |
Figure S15. Get High-res Image Gene #2: 'Amp Peak 2(1q21.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.2e-07 (Chi-square test), Q value = 9.1e-05
Table S16. Gene #2: 'Amp Peak 2(1q21.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 2(1Q21.3) CNV | 92 | 125 | 82 | 86 | 27 | 62 |
| AMP PEAK 2(1Q21.3) WILD-TYPE | 17 | 30 | 24 | 50 | 17 | 51 |
Figure S16. Get High-res Image Gene #2: 'Amp Peak 2(1q21.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2.9e-09 (Chi-square test), Q value = 1.4e-06
Table S17. Gene #2: 'Amp Peak 2(1q21.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 2(1Q21.3) CNV | 150 | 83 | 177 | 113 | 137 | 31 | 10 |
| AMP PEAK 2(1Q21.3) WILD-TYPE | 25 | 56 | 40 | 41 | 87 | 16 | 5 |
Figure S17. Get High-res Image Gene #2: 'Amp Peak 2(1q21.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2.51e-05 (Fisher's exact test), Q value = 0.0076
Table S18. Gene #2: 'Amp Peak 2(1q21.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| AMP PEAK 2(1Q21.3) CNV | 185 | 271 | 237 |
| AMP PEAK 2(1Q21.3) WILD-TYPE | 40 | 105 | 128 |
Figure S18. Get High-res Image Gene #2: 'Amp Peak 2(1q21.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.22e-05 (Chi-square test), Q value = 0.0038
Table S19. Gene #3: 'Amp Peak 3(1q44)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| AMP PEAK 3(1Q44) CNV | 16 | 19 | 69 | 78 | 90 | 57 | 11 | 32 |
| AMP PEAK 3(1Q44) WILD-TYPE | 5 | 17 | 50 | 18 | 19 | 15 | 9 | 8 |
Figure S19. Get High-res Image Gene #3: 'Amp Peak 3(1q44)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 6.67e-08 (Chi-square test), Q value = 2.9e-05
Table S20. Gene #3: 'Amp Peak 3(1q44)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 3(1Q44) CNV | 247 | 167 | 79 | 186 | 31 |
| AMP PEAK 3(1Q44) WILD-TYPE | 127 | 65 | 0 | 66 | 17 |
Figure S20. Get High-res Image Gene #3: 'Amp Peak 3(1q44)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.17e-06 (Chi-square test), Q value = 0.00044
Table S21. Gene #3: 'Amp Peak 3(1q44)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 3(1Q44) CNV | 82 | 128 | 88 | 81 | 29 | 67 |
| AMP PEAK 3(1Q44) WILD-TYPE | 27 | 27 | 18 | 55 | 15 | 46 |
Figure S21. Get High-res Image Gene #3: 'Amp Peak 3(1q44)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.05e-08 (Chi-square test), Q value = 4.8e-06
Table S22. Gene #3: 'Amp Peak 3(1q44)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 3(1Q44) CNV | 134 | 92 | 182 | 117 | 127 | 37 | 12 |
| AMP PEAK 3(1Q44) WILD-TYPE | 41 | 47 | 35 | 37 | 97 | 10 | 3 |
Figure S22. Get High-res Image Gene #3: 'Amp Peak 3(1q44)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.000564 (Fisher's exact test), Q value = 0.13
Table S23. Gene #3: 'Amp Peak 3(1q44)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| AMP PEAK 3(1Q44) CNV | 169 | 289 | 236 |
| AMP PEAK 3(1Q44) WILD-TYPE | 56 | 87 | 129 |
Figure S23. Get High-res Image Gene #3: 'Amp Peak 3(1q44)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00103 (Fisher's exact test), Q value = 0.23
Table S24. Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| AMP PEAK 4(3P26.1) CNV | 15 | 35 | 75 |
| AMP PEAK 4(3P26.1) WILD-TYPE | 107 | 90 | 191 |
Figure S24. Get High-res Image Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1.21e-16 (Chi-square test), Q value = 8e-14
Table S25. Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 4(3P26.1) CNV | 22 | 64 | 20 | 81 | 14 |
| AMP PEAK 4(3P26.1) WILD-TYPE | 352 | 168 | 59 | 171 | 34 |
Figure S25. Get High-res Image Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 7.63e-07 (Chi-square test), Q value = 0.00029
Table S26. Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 4(3P26.1) CNV | 32 | 11 | 26 | 32 | 3 | 12 |
| AMP PEAK 4(3P26.1) WILD-TYPE | 77 | 144 | 80 | 104 | 41 | 101 |
Figure S26. Get High-res Image Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 3.15e-08 (Chi-square test), Q value = 1.4e-05
Table S27. Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 4(3P26.1) CNV | 50 | 10 | 30 | 44 | 55 | 3 | 6 |
| AMP PEAK 4(3P26.1) WILD-TYPE | 125 | 129 | 187 | 110 | 169 | 44 | 9 |
Figure S27. Get High-res Image Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 3.08e-09 (Fisher's exact test), Q value = 1.5e-06
Table S28. Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 4(3P26.1) CNV | 26 | 69 | 103 |
| AMP PEAK 4(3P26.1) WILD-TYPE | 265 | 177 | 331 |
Figure S28. Get High-res Image Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 5.07e-11 (Fisher's exact test), Q value = 2.7e-08
Table S29. Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| AMP PEAK 4(3P26.1) CNV | 25 | 79 | 90 |
| AMP PEAK 4(3P26.1) WILD-TYPE | 249 | 334 | 189 |
Figure S29. Get High-res Image Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 5.89e-09 (Fisher's exact test), Q value = 2.8e-06
Table S30. Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| AMP PEAK 4(3P26.1) CNV | 70 | 42 | 82 |
| AMP PEAK 4(3P26.1) WILD-TYPE | 155 | 334 | 283 |
Figure S30. Get High-res Image Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 9.02e-06 (Fisher's exact test), Q value = 0.0029
Table S31. Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| AMP PEAK 4(3P26.1) CNV | 43 | 23 | 58 |
| AMP PEAK 4(3P26.1) WILD-TYPE | 207 | 187 | 138 |
Figure S31. Get High-res Image Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.000753 (Fisher's exact test), Q value = 0.17
Table S32. Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| AMP PEAK 4(3P26.1) CNV | 19 | 54 | 51 |
| AMP PEAK 4(3P26.1) WILD-TYPE | 141 | 257 | 134 |
Figure S32. Get High-res Image Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 5.51e-11 (Chi-square test), Q value = 2.9e-08
Table S33. Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| AMP PEAK 5(3Q26.32) CNV | 5 | 11 | 39 | 58 | 18 | 34 | 9 | 4 |
| AMP PEAK 5(3Q26.32) WILD-TYPE | 16 | 25 | 80 | 38 | 91 | 38 | 11 | 36 |
Figure S33. Get High-res Image Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 4.13e-11 (Fisher's exact test), Q value = 2.2e-08
Table S34. Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| AMP PEAK 5(3Q26.32) CNV | 19 | 71 | 88 |
| AMP PEAK 5(3Q26.32) WILD-TYPE | 103 | 54 | 178 |
Figure S34. Get High-res Image Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 8.19e-38 (Chi-square test), Q value = 6.6e-35
Table S35. Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 5(3Q26.32) CNV | 35 | 85 | 26 | 150 | 14 |
| AMP PEAK 5(3Q26.32) WILD-TYPE | 339 | 147 | 53 | 102 | 34 |
Figure S35. Get High-res Image Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.06e-19 (Chi-square test), Q value = 7.6e-17
Table S36. Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 5(3Q26.32) CNV | 70 | 18 | 34 | 39 | 10 | 19 |
| AMP PEAK 5(3Q26.32) WILD-TYPE | 39 | 137 | 72 | 97 | 34 | 94 |
Figure S36. Get High-res Image Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 7.16e-07 (Fisher's exact test), Q value = 0.00028
Table S37. Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| AMP PEAK 5(3Q26.32) CNV | 76 | 35 | 28 |
| AMP PEAK 5(3Q26.32) WILD-TYPE | 71 | 98 | 89 |
Figure S37. Get High-res Image Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 2.92e-06 (Fisher's exact test), Q value = 0.001
Table S38. Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| AMP PEAK 5(3Q26.32) CNV | 48 | 25 | 66 |
| AMP PEAK 5(3Q26.32) WILD-TYPE | 113 | 85 | 60 |
Figure S38. Get High-res Image Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 1.78e-27 (Chi-square test), Q value = 1.4e-24
Table S39. Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 5(3Q26.32) CNV | 111 | 19 | 44 | 61 | 58 | 4 | 8 |
| AMP PEAK 5(3Q26.32) WILD-TYPE | 64 | 120 | 173 | 93 | 166 | 43 | 7 |
Figure S39. Get High-res Image Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.61e-24 (Fisher's exact test), Q value = 1.2e-21
Table S40. Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 5(3Q26.32) CNV | 42 | 138 | 125 |
| AMP PEAK 5(3Q26.32) WILD-TYPE | 249 | 108 | 309 |
Figure S40. Get High-res Image Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 9.56e-27 (Fisher's exact test), Q value = 7.4e-24
Table S41. Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| AMP PEAK 5(3Q26.32) CNV | 35 | 113 | 153 |
| AMP PEAK 5(3Q26.32) WILD-TYPE | 239 | 300 | 126 |
Figure S41. Get High-res Image Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 9.78e-24 (Fisher's exact test), Q value = 7.4e-21
Table S42. Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| AMP PEAK 5(3Q26.32) CNV | 130 | 65 | 106 |
| AMP PEAK 5(3Q26.32) WILD-TYPE | 95 | 311 | 259 |
Figure S42. Get High-res Image Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.08e-18 (Fisher's exact test), Q value = 7.5e-16
Table S43. Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| AMP PEAK 5(3Q26.32) CNV | 53 | 31 | 105 |
| AMP PEAK 5(3Q26.32) WILD-TYPE | 197 | 179 | 91 |
Figure S43. Get High-res Image Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 6.44e-16 (Fisher's exact test), Q value = 4.2e-13
Table S44. Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| AMP PEAK 5(3Q26.32) CNV | 28 | 63 | 98 |
| AMP PEAK 5(3Q26.32) WILD-TYPE | 132 | 248 | 87 |
Figure S44. Get High-res Image Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 3.22e-05 (Chi-square test), Q value = 0.0095
Table S45. Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| AMP PEAK 6(4Q13.3) CNV | 4 | 2 | 30 | 20 | 3 | 18 | 4 | 3 |
| AMP PEAK 6(4Q13.3) WILD-TYPE | 17 | 34 | 89 | 76 | 106 | 54 | 16 | 37 |
Figure S45. Get High-res Image Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 4.19e-05 (Fisher's exact test), Q value = 0.012
Table S46. Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| AMP PEAK 6(4Q13.3) CNV | 6 | 30 | 48 |
| AMP PEAK 6(4Q13.3) WILD-TYPE | 116 | 95 | 218 |
Figure S46. Get High-res Image Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1.7e-17 (Chi-square test), Q value = 1.2e-14
Table S47. Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 6(4Q13.3) CNV | 17 | 64 | 2 | 60 | 7 |
| AMP PEAK 6(4Q13.3) WILD-TYPE | 357 | 168 | 77 | 192 | 41 |
Figure S47. Get High-res Image Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3.03e-05 (Chi-square test), Q value = 0.0089
Table S48. Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 6(4Q13.3) CNV | 24 | 8 | 15 | 31 | 3 | 11 |
| AMP PEAK 6(4Q13.3) WILD-TYPE | 85 | 147 | 91 | 105 | 41 | 102 |
Figure S48. Get High-res Image Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 3.3e-11 (Chi-square test), Q value = 1.8e-08
Table S49. Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 6(4Q13.3) CNV | 38 | 6 | 11 | 34 | 54 | 2 | 4 |
| AMP PEAK 6(4Q13.3) WILD-TYPE | 137 | 133 | 206 | 120 | 170 | 45 | 11 |
Figure S49. Get High-res Image Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 3.72e-07 (Fisher's exact test), Q value = 0.00015
Table S50. Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 6(4Q13.3) CNV | 22 | 60 | 67 |
| AMP PEAK 6(4Q13.3) WILD-TYPE | 269 | 186 | 367 |
Figure S50. Get High-res Image Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 4.34e-08 (Fisher's exact test), Q value = 1.9e-05
Table S51. Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| AMP PEAK 6(4Q13.3) CNV | 18 | 63 | 67 |
| AMP PEAK 6(4Q13.3) WILD-TYPE | 256 | 350 | 212 |
Figure S51. Get High-res Image Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3.86e-11 (Fisher's exact test), Q value = 2.1e-08
Table S52. Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| AMP PEAK 6(4Q13.3) CNV | 61 | 25 | 62 |
| AMP PEAK 6(4Q13.3) WILD-TYPE | 164 | 351 | 303 |
Figure S52. Get High-res Image Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 5.52e-05 (Fisher's exact test), Q value = 0.016
Table S53. Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| AMP PEAK 6(4Q13.3) CNV | 36 | 15 | 44 |
| AMP PEAK 6(4Q13.3) WILD-TYPE | 214 | 195 | 152 |
Figure S53. Get High-res Image Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 9.68e-05 (Fisher's exact test), Q value = 0.026
Table S54. Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| AMP PEAK 6(4Q13.3) CNV | 13 | 38 | 44 |
| AMP PEAK 6(4Q13.3) WILD-TYPE | 147 | 273 | 141 |
Figure S54. Get High-res Image Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 3.22e-22 (Chi-square test), Q value = 2.4e-19
Table S55. Gene #7: 'Amp Peak 7(5p15.33)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 7(5P15.33) CNV | 62 | 106 | 41 | 131 | 17 |
| AMP PEAK 7(5P15.33) WILD-TYPE | 312 | 126 | 38 | 121 | 31 |
Figure S55. Get High-res Image Gene #7: 'Amp Peak 7(5p15.33)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 7.05e-09 (Chi-square test), Q value = 3.3e-06
Table S56. Gene #7: 'Amp Peak 7(5p15.33)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 7(5P15.33) CNV | 62 | 41 | 50 | 45 | 8 | 27 |
| AMP PEAK 7(5P15.33) WILD-TYPE | 47 | 114 | 56 | 91 | 36 | 86 |
Figure S56. Get High-res Image Gene #7: 'Amp Peak 7(5p15.33)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.99e-06 (Chi-square test), Q value = 0.00071
Table S57. Gene #7: 'Amp Peak 7(5p15.33)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 7(5P15.33) CNV | 89 | 34 | 66 | 62 | 83 | 9 | 8 |
| AMP PEAK 7(5P15.33) WILD-TYPE | 86 | 105 | 151 | 92 | 141 | 38 | 7 |
Figure S57. Get High-res Image Gene #7: 'Amp Peak 7(5p15.33)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 3.03e-09 (Fisher's exact test), Q value = 1.5e-06
Table S58. Gene #7: 'Amp Peak 7(5p15.33)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 7(5P15.33) CNV | 70 | 123 | 158 |
| AMP PEAK 7(5P15.33) WILD-TYPE | 221 | 123 | 276 |
Figure S58. Get High-res Image Gene #7: 'Amp Peak 7(5p15.33)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.38e-07 (Fisher's exact test), Q value = 5.8e-05
Table S59. Gene #7: 'Amp Peak 7(5p15.33)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| AMP PEAK 7(5P15.33) CNV | 68 | 146 | 133 |
| AMP PEAK 7(5P15.33) WILD-TYPE | 206 | 267 | 146 |
Figure S59. Get High-res Image Gene #7: 'Amp Peak 7(5p15.33)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 7.8e-07 (Fisher's exact test), Q value = 3e-04
Table S60. Gene #7: 'Amp Peak 7(5p15.33)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| AMP PEAK 7(5P15.33) CNV | 112 | 106 | 129 |
| AMP PEAK 7(5P15.33) WILD-TYPE | 113 | 270 | 236 |
Figure S60. Get High-res Image Gene #7: 'Amp Peak 7(5p15.33)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.58e-05 (Fisher's exact test), Q value = 0.0049
Table S61. Gene #7: 'Amp Peak 7(5p15.33)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| AMP PEAK 7(5P15.33) CNV | 91 | 51 | 91 |
| AMP PEAK 7(5P15.33) WILD-TYPE | 159 | 159 | 105 |
Figure S61. Get High-res Image Gene #7: 'Amp Peak 7(5p15.33)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 3.63e-06 (Fisher's exact test), Q value = 0.0012
Table S62. Gene #7: 'Amp Peak 7(5p15.33)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| AMP PEAK 7(5P15.33) CNV | 37 | 106 | 90 |
| AMP PEAK 7(5P15.33) WILD-TYPE | 123 | 205 | 95 |
Figure S62. Get High-res Image Gene #7: 'Amp Peak 7(5p15.33)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.79e-07 (Chi-square test), Q value = 7.5e-05
Table S63. Gene #8: 'Amp Peak 8(6p23)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| AMP PEAK 8(6P23) CNV | 3 | 6 | 30 | 49 | 18 | 27 | 8 | 6 |
| AMP PEAK 8(6P23) WILD-TYPE | 18 | 30 | 89 | 47 | 91 | 45 | 12 | 34 |
Figure S63. Get High-res Image Gene #8: 'Amp Peak 8(6p23)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 1.45e-07 (Fisher's exact test), Q value = 6.1e-05
Table S64. Gene #8: 'Amp Peak 8(6p23)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| AMP PEAK 8(6P23) CNV | 19 | 59 | 69 |
| AMP PEAK 8(6P23) WILD-TYPE | 103 | 66 | 197 |
Figure S64. Get High-res Image Gene #8: 'Amp Peak 8(6p23)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1.67e-38 (Chi-square test), Q value = 1.4e-35
Table S65. Gene #8: 'Amp Peak 8(6p23)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 8(6P23) CNV | 24 | 70 | 17 | 138 | 17 |
| AMP PEAK 8(6P23) WILD-TYPE | 350 | 162 | 62 | 114 | 31 |
Figure S65. Get High-res Image Gene #8: 'Amp Peak 8(6p23)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.46e-21 (Chi-square test), Q value = 1.8e-18
Table S66. Gene #8: 'Amp Peak 8(6p23)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 8(6P23) CNV | 62 | 11 | 28 | 49 | 3 | 17 |
| AMP PEAK 8(6P23) WILD-TYPE | 47 | 144 | 78 | 87 | 41 | 96 |
Figure S66. Get High-res Image Gene #8: 'Amp Peak 8(6p23)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 9.24e-07 (Fisher's exact test), Q value = 0.00035
Table S67. Gene #8: 'Amp Peak 8(6p23)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| AMP PEAK 8(6P23) CNV | 65 | 25 | 23 |
| AMP PEAK 8(6P23) WILD-TYPE | 82 | 108 | 94 |
Figure S67. Get High-res Image Gene #8: 'Amp Peak 8(6p23)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 4.4e-05 (Fisher's exact test), Q value = 0.013
Table S68. Gene #8: 'Amp Peak 8(6p23)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| AMP PEAK 8(6P23) CNV | 34 | 24 | 55 |
| AMP PEAK 8(6P23) WILD-TYPE | 127 | 86 | 71 |
Figure S68. Get High-res Image Gene #8: 'Amp Peak 8(6p23)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 1.52e-20 (Chi-square test), Q value = 1.1e-17
Table S69. Gene #8: 'Amp Peak 8(6p23)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 8(6P23) CNV | 94 | 19 | 30 | 49 | 56 | 7 | 8 |
| AMP PEAK 8(6P23) WILD-TYPE | 81 | 120 | 187 | 105 | 168 | 40 | 7 |
Figure S69. Get High-res Image Gene #8: 'Amp Peak 8(6p23)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.54e-14 (Fisher's exact test), Q value = 9.6e-12
Table S70. Gene #8: 'Amp Peak 8(6p23)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 8(6P23) CNV | 41 | 110 | 112 |
| AMP PEAK 8(6P23) WILD-TYPE | 250 | 136 | 322 |
Figure S70. Get High-res Image Gene #8: 'Amp Peak 8(6p23)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 7.78e-20 (Fisher's exact test), Q value = 5.6e-17
Table S71. Gene #8: 'Amp Peak 8(6p23)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| AMP PEAK 8(6P23) CNV | 33 | 92 | 129 |
| AMP PEAK 8(6P23) WILD-TYPE | 241 | 321 | 150 |
Figure S71. Get High-res Image Gene #8: 'Amp Peak 8(6p23)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.05e-19 (Fisher's exact test), Q value = 1.4e-16
Table S72. Gene #8: 'Amp Peak 8(6p23)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| AMP PEAK 8(6P23) CNV | 108 | 50 | 96 |
| AMP PEAK 8(6P23) WILD-TYPE | 117 | 326 | 269 |
Figure S72. Get High-res Image Gene #8: 'Amp Peak 8(6p23)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2.13e-13 (Fisher's exact test), Q value = 1.3e-10
Table S73. Gene #8: 'Amp Peak 8(6p23)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| AMP PEAK 8(6P23) CNV | 46 | 29 | 88 |
| AMP PEAK 8(6P23) WILD-TYPE | 204 | 181 | 108 |
Figure S73. Get High-res Image Gene #8: 'Amp Peak 8(6p23)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 7.19e-10 (Fisher's exact test), Q value = 3.6e-07
Table S74. Gene #8: 'Amp Peak 8(6p23)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| AMP PEAK 8(6P23) CNV | 25 | 59 | 79 |
| AMP PEAK 8(6P23) WILD-TYPE | 135 | 252 | 106 |
Figure S74. Get High-res Image Gene #8: 'Amp Peak 8(6p23)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.24e-13 (Chi-square test), Q value = 7.5e-11
Table S75. Gene #9: 'Amp Peak 9(6q21)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| AMP PEAK 9(6Q21) CNV | 4 | 1 | 11 | 41 | 11 | 25 | 9 | 2 |
| AMP PEAK 9(6Q21) WILD-TYPE | 17 | 35 | 108 | 55 | 98 | 47 | 11 | 38 |
Figure S75. Get High-res Image Gene #9: 'Amp Peak 9(6q21)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 5.33e-10 (Fisher's exact test), Q value = 2.7e-07
Table S76. Gene #9: 'Amp Peak 9(6q21)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| AMP PEAK 9(6Q21) CNV | 9 | 50 | 45 |
| AMP PEAK 9(6Q21) WILD-TYPE | 113 | 75 | 221 |
Figure S76. Get High-res Image Gene #9: 'Amp Peak 9(6q21)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 9.77e-49 (Chi-square test), Q value = 8.1e-46
Table S77. Gene #9: 'Amp Peak 9(6q21)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 9(6Q21) CNV | 18 | 22 | 14 | 128 | 5 |
| AMP PEAK 9(6Q21) WILD-TYPE | 356 | 210 | 65 | 124 | 43 |
Figure S77. Get High-res Image Gene #9: 'Amp Peak 9(6q21)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 6.63e-19 (Chi-square test), Q value = 4.6e-16
Table S78. Gene #9: 'Amp Peak 9(6q21)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 9(6Q21) CNV | 51 | 5 | 19 | 18 | 2 | 19 |
| AMP PEAK 9(6Q21) WILD-TYPE | 58 | 150 | 87 | 118 | 42 | 94 |
Figure S78. Get High-res Image Gene #9: 'Amp Peak 9(6q21)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.04e-08 (Fisher's exact test), Q value = 4.8e-06
Table S79. Gene #9: 'Amp Peak 9(6q21)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| AMP PEAK 9(6Q21) CNV | 54 | 12 | 16 |
| AMP PEAK 9(6Q21) WILD-TYPE | 93 | 121 | 101 |
Figure S79. Get High-res Image Gene #9: 'Amp Peak 9(6q21)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 4.64e-07 (Fisher's exact test), Q value = 0.00018
Table S80. Gene #9: 'Amp Peak 9(6q21)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| AMP PEAK 9(6Q21) CNV | 20 | 15 | 47 |
| AMP PEAK 9(6Q21) WILD-TYPE | 141 | 95 | 79 |
Figure S80. Get High-res Image Gene #9: 'Amp Peak 9(6q21)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 1.03e-28 (Chi-square test), Q value = 8.1e-26
Table S81. Gene #9: 'Amp Peak 9(6q21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 9(6Q21) CNV | 80 | 8 | 19 | 44 | 23 | 3 | 7 |
| AMP PEAK 9(6Q21) WILD-TYPE | 95 | 131 | 198 | 110 | 201 | 44 | 8 |
Figure S81. Get High-res Image Gene #9: 'Amp Peak 9(6q21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 6.84e-24 (Fisher's exact test), Q value = 5.2e-21
Table S82. Gene #9: 'Amp Peak 9(6q21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 9(6Q21) CNV | 16 | 99 | 69 |
| AMP PEAK 9(6Q21) WILD-TYPE | 275 | 147 | 365 |
Figure S82. Get High-res Image Gene #9: 'Amp Peak 9(6q21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 4.59e-26 (Fisher's exact test), Q value = 3.5e-23
Table S83. Gene #9: 'Amp Peak 9(6q21)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| AMP PEAK 9(6Q21) CNV | 15 | 52 | 110 |
| AMP PEAK 9(6Q21) WILD-TYPE | 259 | 361 | 169 |
Figure S83. Get High-res Image Gene #9: 'Amp Peak 9(6q21)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.41e-24 (Fisher's exact test), Q value = 1.8e-21
Table S84. Gene #9: 'Amp Peak 9(6q21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| AMP PEAK 9(6Q21) CNV | 96 | 30 | 51 |
| AMP PEAK 9(6Q21) WILD-TYPE | 129 | 346 | 314 |
Figure S84. Get High-res Image Gene #9: 'Amp Peak 9(6q21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2.4e-18 (Fisher's exact test), Q value = 1.6e-15
Table S85. Gene #9: 'Amp Peak 9(6q21)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| AMP PEAK 9(6Q21) CNV | 29 | 14 | 78 |
| AMP PEAK 9(6Q21) WILD-TYPE | 221 | 196 | 118 |
Figure S85. Get High-res Image Gene #9: 'Amp Peak 9(6q21)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 5.36e-19 (Fisher's exact test), Q value = 3.7e-16
Table S86. Gene #9: 'Amp Peak 9(6q21)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| AMP PEAK 9(6Q21) CNV | 13 | 31 | 77 |
| AMP PEAK 9(6Q21) WILD-TYPE | 147 | 280 | 108 |
Figure S86. Get High-res Image Gene #9: 'Amp Peak 9(6q21)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.27e-06 (Chi-square test), Q value = 0.00047
Table S87. Gene #10: 'Amp Peak 10(8p11.23)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| AMP PEAK 10(8P11.23) CNV | 11 | 17 | 74 | 31 | 36 | 23 | 5 | 9 |
| AMP PEAK 10(8P11.23) WILD-TYPE | 10 | 19 | 45 | 65 | 73 | 49 | 15 | 31 |
Figure S87. Get High-res Image Gene #10: 'Amp Peak 10(8p11.23)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 3.96e-25 (Chi-square test), Q value = 3e-22
Table S88. Gene #10: 'Amp Peak 10(8p11.23)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 10(8P11.23) CNV | 101 | 119 | 35 | 72 | 47 |
| AMP PEAK 10(8P11.23) WILD-TYPE | 273 | 113 | 44 | 180 | 1 |
Figure S88. Get High-res Image Gene #10: 'Amp Peak 10(8p11.23)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 5.89e-11 (Chi-square test), Q value = 3.1e-08
Table S89. Gene #10: 'Amp Peak 10(8p11.23)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 10(8P11.23) CNV | 37 | 36 | 42 | 86 | 14 | 33 |
| AMP PEAK 10(8P11.23) WILD-TYPE | 72 | 119 | 64 | 50 | 30 | 80 |
Figure S89. Get High-res Image Gene #10: 'Amp Peak 10(8p11.23)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 8.74e-12 (Chi-square test), Q value = 4.9e-09
Table S90. Gene #10: 'Amp Peak 10(8p11.23)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 10(8P11.23) CNV | 56 | 48 | 69 | 45 | 135 | 11 | 5 |
| AMP PEAK 10(8P11.23) WILD-TYPE | 119 | 91 | 148 | 109 | 89 | 36 | 10 |
Figure S90. Get High-res Image Gene #10: 'Amp Peak 10(8p11.23)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 7.67e-08 (Fisher's exact test), Q value = 3.3e-05
Table S91. Gene #10: 'Amp Peak 10(8p11.23)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 10(8P11.23) CNV | 86 | 75 | 208 |
| AMP PEAK 10(8P11.23) WILD-TYPE | 205 | 171 | 226 |
Figure S91. Get High-res Image Gene #10: 'Amp Peak 10(8p11.23)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.79e-22 (Chi-square test), Q value = 1.3e-19
Table S92. Gene #11: 'Amp Peak 11(8p11.21)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 11(8P11.21) CNV | 97 | 102 | 39 | 96 | 48 |
| AMP PEAK 11(8P11.21) WILD-TYPE | 277 | 130 | 40 | 156 | 0 |
Figure S92. Get High-res Image Gene #11: 'Amp Peak 11(8p11.21)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 9.23e-08 (Chi-square test), Q value = 3.9e-05
Table S93. Gene #11: 'Amp Peak 11(8p11.21)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 11(8P11.21) CNV | 59 | 36 | 39 | 71 | 14 | 35 |
| AMP PEAK 11(8P11.21) WILD-TYPE | 50 | 119 | 67 | 65 | 30 | 78 |
Figure S93. Get High-res Image Gene #11: 'Amp Peak 11(8p11.21)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2.27e-08 (Chi-square test), Q value = 1e-05
Table S94. Gene #11: 'Amp Peak 11(8p11.21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 11(8P11.21) CNV | 89 | 40 | 72 | 47 | 115 | 9 | 5 |
| AMP PEAK 11(8P11.21) WILD-TYPE | 86 | 99 | 145 | 107 | 109 | 38 | 10 |
Figure S94. Get High-res Image Gene #11: 'Amp Peak 11(8p11.21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2.09e-07 (Fisher's exact test), Q value = 8.7e-05
Table S95. Gene #11: 'Amp Peak 11(8p11.21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 11(8P11.21) CNV | 75 | 109 | 193 |
| AMP PEAK 11(8P11.21) WILD-TYPE | 216 | 137 | 241 |
Figure S95. Get High-res Image Gene #11: 'Amp Peak 11(8p11.21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 6.27e-16 (Chi-square test), Q value = 4.1e-13
Table S96. Gene #12: 'Amp Peak 12(8q24.21)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| AMP PEAK 12(8Q24.21) CNV | 17 | 20 | 96 | 84 | 46 | 56 | 17 | 15 |
| AMP PEAK 12(8Q24.21) WILD-TYPE | 4 | 16 | 23 | 12 | 63 | 16 | 3 | 25 |
Figure S96. Get High-res Image Gene #12: 'Amp Peak 12(8q24.21)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 1.89e-08 (Fisher's exact test), Q value = 8.5e-06
Table S97. Gene #12: 'Amp Peak 12(8q24.21)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| AMP PEAK 12(8Q24.21) CNV | 59 | 104 | 188 |
| AMP PEAK 12(8Q24.21) WILD-TYPE | 63 | 21 | 78 |
Figure S97. Get High-res Image Gene #12: 'Amp Peak 12(8q24.21)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 2.15e-50 (Chi-square test), Q value = 1.8e-47
Table S98. Gene #12: 'Amp Peak 12(8q24.21)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 12(8Q24.21) CNV | 136 | 178 | 40 | 226 | 46 |
| AMP PEAK 12(8Q24.21) WILD-TYPE | 238 | 54 | 39 | 26 | 2 |
Figure S98. Get High-res Image Gene #12: 'Amp Peak 12(8q24.21)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.15e-27 (Chi-square test), Q value = 9e-25
Table S99. Gene #12: 'Amp Peak 12(8q24.21)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 12(8Q24.21) CNV | 100 | 45 | 70 | 105 | 17 | 61 |
| AMP PEAK 12(8Q24.21) WILD-TYPE | 9 | 110 | 36 | 31 | 27 | 52 |
Figure S99. Get High-res Image Gene #12: 'Amp Peak 12(8q24.21)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 4.58e-08 (Fisher's exact test), Q value = 2e-05
Table S100. Gene #12: 'Amp Peak 12(8q24.21)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| AMP PEAK 12(8Q24.21) CNV | 125 | 72 | 76 |
| AMP PEAK 12(8Q24.21) WILD-TYPE | 22 | 61 | 41 |
Figure S100. Get High-res Image Gene #12: 'Amp Peak 12(8q24.21)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 9.36e-07 (Fisher's exact test), Q value = 0.00036
Table S101. Gene #12: 'Amp Peak 12(8q24.21)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| AMP PEAK 12(8Q24.21) CNV | 102 | 63 | 108 |
| AMP PEAK 12(8Q24.21) WILD-TYPE | 59 | 47 | 18 |
Figure S101. Get High-res Image Gene #12: 'Amp Peak 12(8q24.21)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 5.29e-30 (Chi-square test), Q value = 4.2e-27
Table S102. Gene #12: 'Amp Peak 12(8q24.21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 12(8Q24.21) CNV | 155 | 63 | 90 | 109 | 169 | 16 | 13 |
| AMP PEAK 12(8Q24.21) WILD-TYPE | 20 | 76 | 127 | 45 | 55 | 31 | 2 |
Figure S102. Get High-res Image Gene #12: 'Amp Peak 12(8q24.21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 9.61e-24 (Fisher's exact test), Q value = 7.3e-21
Table S103. Gene #12: 'Amp Peak 12(8q24.21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 12(8Q24.21) CNV | 123 | 207 | 285 |
| AMP PEAK 12(8Q24.21) WILD-TYPE | 168 | 39 | 149 |
Figure S103. Get High-res Image Gene #12: 'Amp Peak 12(8q24.21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.28e-28 (Fisher's exact test), Q value = 1e-25
Table S104. Gene #12: 'Amp Peak 12(8q24.21)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| AMP PEAK 12(8Q24.21) CNV | 117 | 250 | 243 |
| AMP PEAK 12(8Q24.21) WILD-TYPE | 157 | 163 | 36 |
Figure S104. Get High-res Image Gene #12: 'Amp Peak 12(8q24.21)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.62e-26 (Fisher's exact test), Q value = 2e-23
Table S105. Gene #12: 'Amp Peak 12(8q24.21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| AMP PEAK 12(8Q24.21) CNV | 199 | 174 | 237 |
| AMP PEAK 12(8Q24.21) WILD-TYPE | 26 | 202 | 128 |
Figure S105. Get High-res Image Gene #12: 'Amp Peak 12(8q24.21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 9.97e-24 (Fisher's exact test), Q value = 7.5e-21
Table S106. Gene #12: 'Amp Peak 12(8q24.21)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| AMP PEAK 12(8Q24.21) CNV | 136 | 87 | 172 |
| AMP PEAK 12(8Q24.21) WILD-TYPE | 114 | 123 | 24 |
Figure S106. Get High-res Image Gene #12: 'Amp Peak 12(8q24.21)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1.04e-15 (Fisher's exact test), Q value = 6.7e-13
Table S107. Gene #12: 'Amp Peak 12(8q24.21)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| AMP PEAK 12(8Q24.21) CNV | 71 | 169 | 155 |
| AMP PEAK 12(8Q24.21) WILD-TYPE | 89 | 142 | 30 |
Figure S107. Get High-res Image Gene #12: 'Amp Peak 12(8q24.21)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 2.47e-21 (Chi-square test), Q value = 1.8e-18
Table S108. Gene #13: 'Amp Peak 13(10p15.1)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| AMP PEAK 13(10P15.1) CNV | 6 | 3 | 26 | 67 | 12 | 34 | 6 | 7 |
| AMP PEAK 13(10P15.1) WILD-TYPE | 15 | 33 | 93 | 29 | 97 | 38 | 14 | 33 |
Figure S108. Get High-res Image Gene #13: 'Amp Peak 13(10p15.1)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 5.89e-19 (Fisher's exact test), Q value = 4.1e-16
Table S109. Gene #13: 'Amp Peak 13(10p15.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| AMP PEAK 13(10P15.1) CNV | 19 | 81 | 61 |
| AMP PEAK 13(10P15.1) WILD-TYPE | 103 | 44 | 205 |
Figure S109. Get High-res Image Gene #13: 'Amp Peak 13(10p15.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1.09e-43 (Chi-square test), Q value = 8.9e-41
Table S110. Gene #13: 'Amp Peak 13(10p15.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 13(10P15.1) CNV | 33 | 62 | 17 | 154 | 11 |
| AMP PEAK 13(10P15.1) WILD-TYPE | 341 | 170 | 62 | 98 | 37 |
Figure S110. Get High-res Image Gene #13: 'Amp Peak 13(10p15.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.53e-27 (Chi-square test), Q value = 1.2e-24
Table S111. Gene #13: 'Amp Peak 13(10p15.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 13(10P15.1) CNV | 73 | 10 | 27 | 30 | 3 | 29 |
| AMP PEAK 13(10P15.1) WILD-TYPE | 36 | 145 | 79 | 106 | 41 | 84 |
Figure S111. Get High-res Image Gene #13: 'Amp Peak 13(10p15.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 7e-11 (Fisher's exact test), Q value = 3.7e-08
Table S112. Gene #13: 'Amp Peak 13(10p15.1)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| AMP PEAK 13(10P15.1) CNV | 78 | 22 | 29 |
| AMP PEAK 13(10P15.1) WILD-TYPE | 69 | 111 | 88 |
Figure S112. Get High-res Image Gene #13: 'Amp Peak 13(10p15.1)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 2.33e-12 (Fisher's exact test), Q value = 1.3e-09
Table S113. Gene #13: 'Amp Peak 13(10p15.1)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| AMP PEAK 13(10P15.1) CNV | 30 | 26 | 73 |
| AMP PEAK 13(10P15.1) WILD-TYPE | 131 | 84 | 53 |
Figure S113. Get High-res Image Gene #13: 'Amp Peak 13(10p15.1)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 3.38e-37 (Chi-square test), Q value = 2.7e-34
Table S114. Gene #13: 'Amp Peak 13(10p15.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 13(10P15.1) CNV | 113 | 16 | 23 | 58 | 51 | 6 | 7 |
| AMP PEAK 13(10P15.1) WILD-TYPE | 62 | 123 | 194 | 96 | 173 | 41 | 8 |
Figure S114. Get High-res Image Gene #13: 'Amp Peak 13(10p15.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 6.77e-33 (Fisher's exact test), Q value = 5.4e-30
Table S115. Gene #13: 'Amp Peak 13(10p15.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 13(10P15.1) CNV | 35 | 143 | 96 |
| AMP PEAK 13(10P15.1) WILD-TYPE | 256 | 103 | 338 |
Figure S115. Get High-res Image Gene #13: 'Amp Peak 13(10p15.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2.75e-33 (Fisher's exact test), Q value = 2.2e-30
Table S116. Gene #13: 'Amp Peak 13(10p15.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| AMP PEAK 13(10P15.1) CNV | 32 | 82 | 155 |
| AMP PEAK 13(10P15.1) WILD-TYPE | 242 | 331 | 124 |
Figure S116. Get High-res Image Gene #13: 'Amp Peak 13(10p15.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 5.26e-33 (Fisher's exact test), Q value = 4.2e-30
Table S117. Gene #13: 'Amp Peak 13(10p15.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| AMP PEAK 13(10P15.1) CNV | 135 | 52 | 82 |
| AMP PEAK 13(10P15.1) WILD-TYPE | 90 | 324 | 283 |
Figure S117. Get High-res Image Gene #13: 'Amp Peak 13(10p15.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.41e-18 (Fisher's exact test), Q value = 9.7e-16
Table S118. Gene #13: 'Amp Peak 13(10p15.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| AMP PEAK 13(10P15.1) CNV | 47 | 27 | 99 |
| AMP PEAK 13(10P15.1) WILD-TYPE | 203 | 183 | 97 |
Figure S118. Get High-res Image Gene #13: 'Amp Peak 13(10p15.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 4.98e-21 (Fisher's exact test), Q value = 3.6e-18
Table S119. Gene #13: 'Amp Peak 13(10p15.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| AMP PEAK 13(10P15.1) CNV | 20 | 54 | 99 |
| AMP PEAK 13(10P15.1) WILD-TYPE | 140 | 257 | 86 |
Figure S119. Get High-res Image Gene #13: 'Amp Peak 13(10p15.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 9.27e-06 (Chi-square test), Q value = 0.003
Table S120. Gene #14: 'Amp Peak 14(10q22.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| AMP PEAK 14(10Q22.3) CNV | 6 | 2 | 15 | 18 | 9 | 23 | 8 | 3 |
| AMP PEAK 14(10Q22.3) WILD-TYPE | 15 | 34 | 104 | 78 | 100 | 49 | 12 | 37 |
Figure S120. Get High-res Image Gene #14: 'Amp Peak 14(10q22.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 2.25e-09 (Chi-square test), Q value = 1.1e-06
Table S121. Gene #14: 'Amp Peak 14(10q22.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 14(10Q22.3) CNV | 22 | 35 | 13 | 63 | 6 |
| AMP PEAK 14(10Q22.3) WILD-TYPE | 352 | 197 | 66 | 189 | 42 |
Figure S121. Get High-res Image Gene #14: 'Amp Peak 14(10q22.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.21e-11 (Chi-square test), Q value = 6.7e-09
Table S122. Gene #14: 'Amp Peak 14(10q22.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 14(10Q22.3) CNV | 33 | 10 | 19 | 40 | 25 | 2 | 9 |
| AMP PEAK 14(10Q22.3) WILD-TYPE | 142 | 129 | 198 | 114 | 199 | 45 | 6 |
Figure S122. Get High-res Image Gene #14: 'Amp Peak 14(10q22.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 5.46e-07 (Fisher's exact test), Q value = 0.00021
Table S123. Gene #14: 'Amp Peak 14(10q22.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 14(10Q22.3) CNV | 18 | 53 | 67 |
| AMP PEAK 14(10Q22.3) WILD-TYPE | 273 | 193 | 367 |
Figure S123. Get High-res Image Gene #14: 'Amp Peak 14(10q22.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 3.04e-06 (Fisher's exact test), Q value = 0.0011
Table S124. Gene #14: 'Amp Peak 14(10q22.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| AMP PEAK 14(10Q22.3) CNV | 18 | 58 | 59 |
| AMP PEAK 14(10Q22.3) WILD-TYPE | 256 | 355 | 220 |
Figure S124. Get High-res Image Gene #14: 'Amp Peak 14(10q22.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.18e-05 (Fisher's exact test), Q value = 0.0037
Table S125. Gene #14: 'Amp Peak 14(10q22.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| AMP PEAK 14(10Q22.3) CNV | 37 | 11 | 40 |
| AMP PEAK 14(10Q22.3) WILD-TYPE | 213 | 199 | 156 |
Figure S125. Get High-res Image Gene #14: 'Amp Peak 14(10q22.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.00066 (Fisher's exact test), Q value = 0.15
Table S126. Gene #14: 'Amp Peak 14(10q22.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| AMP PEAK 14(10Q22.3) CNV | 9 | 44 | 35 |
| AMP PEAK 14(10Q22.3) WILD-TYPE | 151 | 267 | 150 |
Figure S126. Get High-res Image Gene #14: 'Amp Peak 14(10q22.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 4.68e-17 (Chi-square test), Q value = 3.1e-14
Table S127. Gene #15: 'Amp Peak 15(11p13)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 15(11P13) CNV | 26 | 63 | 14 | 89 | 12 |
| AMP PEAK 15(11P13) WILD-TYPE | 348 | 169 | 65 | 163 | 36 |
Figure S127. Get High-res Image Gene #15: 'Amp Peak 15(11p13)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 5.19e-07 (Chi-square test), Q value = 0.00021
Table S128. Gene #15: 'Amp Peak 15(11p13)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 15(11P13) CNV | 38 | 19 | 16 | 39 | 3 | 15 |
| AMP PEAK 15(11P13) WILD-TYPE | 71 | 136 | 90 | 97 | 41 | 98 |
Figure S128. Get High-res Image Gene #15: 'Amp Peak 15(11p13)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2.26e-10 (Chi-square test), Q value = 1.2e-07
Table S129. Gene #15: 'Amp Peak 15(11p13)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 15(11P13) CNV | 63 | 11 | 24 | 38 | 58 | 7 | 3 |
| AMP PEAK 15(11P13) WILD-TYPE | 112 | 128 | 193 | 116 | 166 | 40 | 12 |
Figure S129. Get High-res Image Gene #15: 'Amp Peak 15(11p13)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 5.17e-07 (Fisher's exact test), Q value = 2e-04
Table S130. Gene #15: 'Amp Peak 15(11p13)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 15(11P13) CNV | 37 | 78 | 89 |
| AMP PEAK 15(11P13) WILD-TYPE | 254 | 168 | 345 |
Figure S130. Get High-res Image Gene #15: 'Amp Peak 15(11p13)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 3.84e-09 (Fisher's exact test), Q value = 1.8e-06
Table S131. Gene #15: 'Amp Peak 15(11p13)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| AMP PEAK 15(11P13) CNV | 27 | 86 | 86 |
| AMP PEAK 15(11P13) WILD-TYPE | 247 | 327 | 193 |
Figure S131. Get High-res Image Gene #15: 'Amp Peak 15(11p13)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.1e-11 (Fisher's exact test), Q value = 6.1e-09
Table S132. Gene #15: 'Amp Peak 15(11p13)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| AMP PEAK 15(11P13) CNV | 74 | 38 | 87 |
| AMP PEAK 15(11P13) WILD-TYPE | 151 | 338 | 278 |
Figure S132. Get High-res Image Gene #15: 'Amp Peak 15(11p13)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 7.39e-06 (Fisher's exact test), Q value = 0.0025
Table S133. Gene #15: 'Amp Peak 15(11p13)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| AMP PEAK 15(11P13) CNV | 48 | 20 | 55 |
| AMP PEAK 15(11P13) WILD-TYPE | 202 | 190 | 141 |
Figure S133. Get High-res Image Gene #15: 'Amp Peak 15(11p13)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.00011 (Fisher's exact test), Q value = 0.029
Table S134. Gene #15: 'Amp Peak 15(11p13)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| AMP PEAK 15(11P13) CNV | 15 | 58 | 50 |
| AMP PEAK 15(11P13) WILD-TYPE | 145 | 253 | 135 |
Figure S134. Get High-res Image Gene #15: 'Amp Peak 15(11p13)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.000715 (Chi-square test), Q value = 0.16
Table S135. Gene #16: 'Amp Peak 16(11q13.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| AMP PEAK 16(11Q13.3) CNV | 13 | 17 | 61 | 29 | 33 | 37 | 11 | 13 |
| AMP PEAK 16(11Q13.3) WILD-TYPE | 8 | 19 | 58 | 67 | 76 | 35 | 9 | 27 |
Figure S135. Get High-res Image Gene #16: 'Amp Peak 16(11q13.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 1.57e-40 (Chi-square test), Q value = 1.3e-37
Table S136. Gene #16: 'Amp Peak 16(11q13.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 16(11Q13.3) CNV | 59 | 166 | 25 | 97 | 17 |
| AMP PEAK 16(11Q13.3) WILD-TYPE | 315 | 66 | 54 | 155 | 31 |
Figure S136. Get High-res Image Gene #16: 'Amp Peak 16(11q13.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.92e-10 (Chi-square test), Q value = 1.5e-07
Table S137. Gene #16: 'Amp Peak 16(11q13.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 16(11Q13.3) CNV | 39 | 37 | 50 | 72 | 11 | 19 |
| AMP PEAK 16(11Q13.3) WILD-TYPE | 70 | 118 | 56 | 64 | 33 | 94 |
Figure S137. Get High-res Image Gene #16: 'Amp Peak 16(11q13.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 5.57e-10 (Chi-square test), Q value = 2.8e-07
Table S138. Gene #16: 'Amp Peak 16(11q13.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 16(11Q13.3) CNV | 59 | 40 | 53 | 69 | 121 | 13 | 8 |
| AMP PEAK 16(11Q13.3) WILD-TYPE | 116 | 99 | 164 | 85 | 103 | 34 | 7 |
Figure S138. Get High-res Image Gene #16: 'Amp Peak 16(11q13.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.000983 (Fisher's exact test), Q value = 0.22
Table S139. Gene #16: 'Amp Peak 16(11q13.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 16(11Q13.3) CNV | 87 | 88 | 188 |
| AMP PEAK 16(11Q13.3) WILD-TYPE | 204 | 158 | 246 |
Figure S139. Get High-res Image Gene #16: 'Amp Peak 16(11q13.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.000222 (Fisher's exact test), Q value = 0.055
Table S140. Gene #16: 'Amp Peak 16(11q13.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| AMP PEAK 16(11Q13.3) CNV | 74 | 173 | 109 |
| AMP PEAK 16(11Q13.3) WILD-TYPE | 200 | 240 | 170 |
Figure S140. Get High-res Image Gene #16: 'Amp Peak 16(11q13.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.6e-05 (Fisher's exact test), Q value = 0.0078
Table S141. Gene #16: 'Amp Peak 16(11q13.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| AMP PEAK 16(11Q13.3) CNV | 84 | 108 | 164 |
| AMP PEAK 16(11Q13.3) WILD-TYPE | 141 | 268 | 201 |
Figure S141. Get High-res Image Gene #16: 'Amp Peak 16(11q13.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 4.39e-19 (Chi-square test), Q value = 3.1e-16
Table S142. Gene #17: 'Amp Peak 17(11q14.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 17(11Q14.1) CNV | 35 | 89 | 16 | 94 | 12 |
| AMP PEAK 17(11Q14.1) WILD-TYPE | 339 | 143 | 63 | 158 | 36 |
Figure S142. Get High-res Image Gene #17: 'Amp Peak 17(11q14.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.000127 (Chi-square test), Q value = 0.033
Table S143. Gene #17: 'Amp Peak 17(11q14.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 17(11Q14.1) CNV | 38 | 24 | 33 | 31 | 9 | 14 |
| AMP PEAK 17(11Q14.1) WILD-TYPE | 71 | 131 | 73 | 105 | 35 | 99 |
Figure S143. Get High-res Image Gene #17: 'Amp Peak 17(11q14.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.92e-06 (Chi-square test), Q value = 0.00069
Table S144. Gene #17: 'Amp Peak 17(11q14.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 17(11Q14.1) CNV | 61 | 24 | 33 | 48 | 69 | 5 | 4 |
| AMP PEAK 17(11Q14.1) WILD-TYPE | 114 | 115 | 184 | 106 | 155 | 42 | 11 |
Figure S144. Get High-res Image Gene #17: 'Amp Peak 17(11q14.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 8.31e-06 (Fisher's exact test), Q value = 0.0027
Table S145. Gene #17: 'Amp Peak 17(11q14.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 17(11Q14.1) CNV | 48 | 85 | 111 |
| AMP PEAK 17(11Q14.1) WILD-TYPE | 243 | 161 | 323 |
Figure S145. Get High-res Image Gene #17: 'Amp Peak 17(11q14.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 3.88e-07 (Fisher's exact test), Q value = 0.00016
Table S146. Gene #17: 'Amp Peak 17(11q14.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| AMP PEAK 17(11Q14.1) CNV | 41 | 102 | 97 |
| AMP PEAK 17(11Q14.1) WILD-TYPE | 233 | 311 | 182 |
Figure S146. Get High-res Image Gene #17: 'Amp Peak 17(11q14.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.4e-07 (Fisher's exact test), Q value = 5.9e-05
Table S147. Gene #17: 'Amp Peak 17(11q14.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| AMP PEAK 17(11Q14.1) CNV | 78 | 59 | 103 |
| AMP PEAK 17(11Q14.1) WILD-TYPE | 147 | 317 | 262 |
Figure S147. Get High-res Image Gene #17: 'Amp Peak 17(11q14.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.000146 (Fisher's exact test), Q value = 0.038
Table S148. Gene #17: 'Amp Peak 17(11q14.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| AMP PEAK 17(11Q14.1) CNV | 53 | 33 | 65 |
| AMP PEAK 17(11Q14.1) WILD-TYPE | 197 | 177 | 131 |
Figure S148. Get High-res Image Gene #17: 'Amp Peak 17(11q14.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.000288 (Fisher's exact test), Q value = 0.071
Table S149. Gene #17: 'Amp Peak 17(11q14.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| AMP PEAK 17(11Q14.1) CNV | 26 | 63 | 62 |
| AMP PEAK 17(11Q14.1) WILD-TYPE | 134 | 248 | 123 |
Figure S149. Get High-res Image Gene #17: 'Amp Peak 17(11q14.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 6.85e-12 (Chi-square test), Q value = 3.8e-09
Table S150. Gene #18: 'Amp Peak 18(12p13.33)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| AMP PEAK 18(12P13.33) CNV | 3 | 4 | 35 | 53 | 16 | 29 | 3 | 3 |
| AMP PEAK 18(12P13.33) WILD-TYPE | 18 | 32 | 84 | 43 | 93 | 43 | 17 | 37 |
Figure S150. Get High-res Image Gene #18: 'Amp Peak 18(12p13.33)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 9.63e-12 (Fisher's exact test), Q value = 5.4e-09
Table S151. Gene #18: 'Amp Peak 18(12p13.33)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| AMP PEAK 18(12P13.33) CNV | 11 | 61 | 74 |
| AMP PEAK 18(12P13.33) WILD-TYPE | 111 | 64 | 192 |
Figure S151. Get High-res Image Gene #18: 'Amp Peak 18(12p13.33)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 9.92e-34 (Chi-square test), Q value = 7.9e-31
Table S152. Gene #18: 'Amp Peak 18(12p13.33)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 18(12P13.33) CNV | 21 | 73 | 25 | 126 | 12 |
| AMP PEAK 18(12P13.33) WILD-TYPE | 353 | 159 | 54 | 126 | 36 |
Figure S152. Get High-res Image Gene #18: 'Amp Peak 18(12p13.33)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.38e-21 (Chi-square test), Q value = 1.7e-18
Table S153. Gene #18: 'Amp Peak 18(12p13.33)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 18(12P13.33) CNV | 63 | 15 | 23 | 42 | 3 | 13 |
| AMP PEAK 18(12P13.33) WILD-TYPE | 46 | 140 | 83 | 94 | 41 | 100 |
Figure S153. Get High-res Image Gene #18: 'Amp Peak 18(12p13.33)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2.7e-08 (Fisher's exact test), Q value = 1.2e-05
Table S154. Gene #18: 'Amp Peak 18(12p13.33)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| AMP PEAK 18(12P13.33) CNV | 69 | 31 | 18 |
| AMP PEAK 18(12P13.33) WILD-TYPE | 78 | 102 | 99 |
Figure S154. Get High-res Image Gene #18: 'Amp Peak 18(12p13.33)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 2.37e-07 (Fisher's exact test), Q value = 9.7e-05
Table S155. Gene #18: 'Amp Peak 18(12p13.33)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| AMP PEAK 18(12P13.33) CNV | 43 | 16 | 59 |
| AMP PEAK 18(12P13.33) WILD-TYPE | 118 | 94 | 67 |
Figure S155. Get High-res Image Gene #18: 'Amp Peak 18(12p13.33)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 5.31e-27 (Chi-square test), Q value = 4.1e-24
Table S156. Gene #18: 'Amp Peak 18(12p13.33)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 18(12P13.33) CNV | 100 | 16 | 25 | 45 | 61 | 4 | 2 |
| AMP PEAK 18(12P13.33) WILD-TYPE | 75 | 123 | 192 | 109 | 163 | 43 | 13 |
Figure S156. Get High-res Image Gene #18: 'Amp Peak 18(12p13.33)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2.66e-20 (Fisher's exact test), Q value = 1.9e-17
Table S157. Gene #18: 'Amp Peak 18(12p13.33)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 18(12P13.33) CNV | 34 | 117 | 102 |
| AMP PEAK 18(12P13.33) WILD-TYPE | 257 | 129 | 332 |
Figure S157. Get High-res Image Gene #18: 'Amp Peak 18(12p13.33)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 3.78e-22 (Fisher's exact test), Q value = 2.8e-19
Table S158. Gene #18: 'Amp Peak 18(12p13.33)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| AMP PEAK 18(12P13.33) CNV | 35 | 80 | 133 |
| AMP PEAK 18(12P13.33) WILD-TYPE | 239 | 333 | 146 |
Figure S158. Get High-res Image Gene #18: 'Amp Peak 18(12p13.33)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.21e-21 (Fisher's exact test), Q value = 8.9e-19
Table S159. Gene #18: 'Amp Peak 18(12p13.33)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| AMP PEAK 18(12P13.33) CNV | 114 | 53 | 81 |
| AMP PEAK 18(12P13.33) WILD-TYPE | 111 | 323 | 284 |
Figure S159. Get High-res Image Gene #18: 'Amp Peak 18(12p13.33)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 3.64e-20 (Fisher's exact test), Q value = 2.6e-17
Table S160. Gene #18: 'Amp Peak 18(12p13.33)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| AMP PEAK 18(12P13.33) CNV | 37 | 25 | 96 |
| AMP PEAK 18(12P13.33) WILD-TYPE | 213 | 185 | 100 |
Figure S160. Get High-res Image Gene #18: 'Amp Peak 18(12p13.33)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 5.94e-14 (Fisher's exact test), Q value = 3.7e-11
Table S161. Gene #18: 'Amp Peak 18(12p13.33)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| AMP PEAK 18(12P13.33) CNV | 21 | 53 | 84 |
| AMP PEAK 18(12P13.33) WILD-TYPE | 139 | 258 | 101 |
Figure S161. Get High-res Image Gene #18: 'Amp Peak 18(12p13.33)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 3.35e-07 (Chi-square test), Q value = 0.00014
Table S162. Gene #19: 'Amp Peak 19(12q15)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| AMP PEAK 19(12Q15) CNV | 4 | 6 | 52 | 21 | 19 | 35 | 7 | 6 |
| AMP PEAK 19(12Q15) WILD-TYPE | 17 | 30 | 67 | 75 | 90 | 37 | 13 | 34 |
Figure S162. Get High-res Image Gene #19: 'Amp Peak 19(12q15)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 5.01e-06 (Fisher's exact test), Q value = 0.0017
Table S163. Gene #19: 'Amp Peak 19(12q15)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| AMP PEAK 19(12Q15) CNV | 19 | 29 | 102 |
| AMP PEAK 19(12Q15) WILD-TYPE | 103 | 96 | 164 |
Figure S163. Get High-res Image Gene #19: 'Amp Peak 19(12q15)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 3.52e-29 (Chi-square test), Q value = 2.8e-26
Table S164. Gene #19: 'Amp Peak 19(12q15)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 19(12Q15) CNV | 29 | 116 | 27 | 64 | 12 |
| AMP PEAK 19(12Q15) WILD-TYPE | 345 | 116 | 52 | 188 | 36 |
Figure S164. Get High-res Image Gene #19: 'Amp Peak 19(12q15)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.54e-13 (Chi-square test), Q value = 9.4e-11
Table S165. Gene #19: 'Amp Peak 19(12q15)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 19(12Q15) CNV | 19 | 22 | 24 | 65 | 6 | 12 |
| AMP PEAK 19(12Q15) WILD-TYPE | 90 | 133 | 82 | 71 | 38 | 101 |
Figure S165. Get High-res Image Gene #19: 'Amp Peak 19(12q15)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.28e-11 (Chi-square test), Q value = 7.1e-09
Table S166. Gene #19: 'Amp Peak 19(12q15)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 19(12Q15) CNV | 31 | 19 | 36 | 57 | 90 | 9 | 3 |
| AMP PEAK 19(12Q15) WILD-TYPE | 144 | 120 | 181 | 97 | 134 | 38 | 12 |
Figure S166. Get High-res Image Gene #19: 'Amp Peak 19(12q15)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 6.73e-07 (Fisher's exact test), Q value = 0.00026
Table S167. Gene #19: 'Amp Peak 19(12q15)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 19(12Q15) CNV | 50 | 50 | 145 |
| AMP PEAK 19(12Q15) WILD-TYPE | 241 | 196 | 289 |
Figure S167. Get High-res Image Gene #19: 'Amp Peak 19(12q15)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 3.8e-05 (Fisher's exact test), Q value = 0.011
Table S168. Gene #19: 'Amp Peak 19(12q15)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| AMP PEAK 19(12Q15) CNV | 43 | 126 | 73 |
| AMP PEAK 19(12Q15) WILD-TYPE | 231 | 287 | 206 |
Figure S168. Get High-res Image Gene #19: 'Amp Peak 19(12q15)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.48e-06 (Fisher's exact test), Q value = 0.00087
Table S169. Gene #19: 'Amp Peak 19(12q15)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| AMP PEAK 19(12Q15) CNV | 50 | 68 | 124 |
| AMP PEAK 19(12Q15) WILD-TYPE | 175 | 308 | 241 |
Figure S169. Get High-res Image Gene #19: 'Amp Peak 19(12q15)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.19e-05 (Chi-square test), Q value = 0.0037
Table S170. Gene #20: 'Amp Peak 20(13q12.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 20(13Q12.3) CNV | 24 | 41 | 11 | 49 | 9 |
| AMP PEAK 20(13Q12.3) WILD-TYPE | 350 | 191 | 68 | 203 | 39 |
Figure S170. Get High-res Image Gene #20: 'Amp Peak 20(13q12.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 6.49e-06 (Chi-square test), Q value = 0.0022
Table S171. Gene #20: 'Amp Peak 20(13q12.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 20(13Q12.3) CNV | 25 | 9 | 20 | 39 | 36 | 1 | 2 |
| AMP PEAK 20(13Q12.3) WILD-TYPE | 150 | 130 | 197 | 115 | 188 | 46 | 13 |
Figure S171. Get High-res Image Gene #20: 'Amp Peak 20(13q12.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 4.48e-05 (Fisher's exact test), Q value = 0.013
Table S172. Gene #20: 'Amp Peak 20(13q12.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 20(13Q12.3) CNV | 19 | 38 | 75 |
| AMP PEAK 20(13Q12.3) WILD-TYPE | 272 | 208 | 359 |
Figure S172. Get High-res Image Gene #20: 'Amp Peak 20(13q12.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.15e-05 (Fisher's exact test), Q value = 0.0037
Table S173. Gene #20: 'Amp Peak 20(13q12.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| AMP PEAK 20(13Q12.3) CNV | 17 | 60 | 54 |
| AMP PEAK 20(13Q12.3) WILD-TYPE | 257 | 353 | 225 |
Figure S173. Get High-res Image Gene #20: 'Amp Peak 20(13q12.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 5.11e-05 (Fisher's exact test), Q value = 0.014
Table S174. Gene #20: 'Amp Peak 20(13q12.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| AMP PEAK 20(13Q12.3) CNV | 42 | 29 | 60 |
| AMP PEAK 20(13Q12.3) WILD-TYPE | 183 | 347 | 305 |
Figure S174. Get High-res Image Gene #20: 'Amp Peak 20(13q12.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.45e-09 (Chi-square test), Q value = 7.1e-07
Table S175. Gene #21: 'Amp Peak 21(13q34)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| AMP PEAK 21(13Q34) CNV | 3 | 3 | 19 | 42 | 15 | 10 | 4 | 0 |
| AMP PEAK 21(13Q34) WILD-TYPE | 18 | 33 | 100 | 54 | 94 | 62 | 16 | 40 |
Figure S175. Get High-res Image Gene #21: 'Amp Peak 21(13q34)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 2.67e-09 (Fisher's exact test), Q value = 1.3e-06
Table S176. Gene #21: 'Amp Peak 21(13q34)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| AMP PEAK 21(13Q34) CNV | 9 | 47 | 40 |
| AMP PEAK 21(13Q34) WILD-TYPE | 113 | 78 | 226 |
Figure S176. Get High-res Image Gene #21: 'Amp Peak 21(13q34)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 2.61e-19 (Chi-square test), Q value = 1.8e-16
Table S177. Gene #21: 'Amp Peak 21(13q34)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 21(13Q34) CNV | 30 | 31 | 7 | 91 | 7 |
| AMP PEAK 21(13Q34) WILD-TYPE | 344 | 201 | 72 | 161 | 41 |
Figure S177. Get High-res Image Gene #21: 'Amp Peak 21(13q34)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 6.52e-14 (Chi-square test), Q value = 4e-11
Table S178. Gene #21: 'Amp Peak 21(13q34)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 21(13Q34) CNV | 45 | 11 | 14 | 20 | 2 | 11 |
| AMP PEAK 21(13Q34) WILD-TYPE | 64 | 144 | 92 | 116 | 42 | 102 |
Figure S178. Get High-res Image Gene #21: 'Amp Peak 21(13q34)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 8.21e-06 (Fisher's exact test), Q value = 0.0027
Table S179. Gene #21: 'Amp Peak 21(13q34)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| AMP PEAK 21(13Q34) CNV | 48 | 22 | 11 |
| AMP PEAK 21(13Q34) WILD-TYPE | 99 | 111 | 106 |
Figure S179. Get High-res Image Gene #21: 'Amp Peak 21(13q34)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 5.1e-08 (Fisher's exact test), Q value = 2.2e-05
Table S180. Gene #21: 'Amp Peak 21(13q34)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| AMP PEAK 21(13Q34) CNV | 25 | 9 | 47 |
| AMP PEAK 21(13Q34) WILD-TYPE | 136 | 101 | 79 |
Figure S180. Get High-res Image Gene #21: 'Amp Peak 21(13q34)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 4.72e-20 (Chi-square test), Q value = 3.4e-17
Table S181. Gene #21: 'Amp Peak 21(13q34)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 21(13Q34) CNV | 71 | 8 | 17 | 30 | 34 | 1 | 3 |
| AMP PEAK 21(13Q34) WILD-TYPE | 104 | 131 | 200 | 124 | 190 | 46 | 12 |
Figure S181. Get High-res Image Gene #21: 'Amp Peak 21(13q34)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 7.98e-21 (Fisher's exact test), Q value = 5.8e-18
Table S182. Gene #21: 'Amp Peak 21(13q34)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 21(13Q34) CNV | 14 | 88 | 62 |
| AMP PEAK 21(13Q34) WILD-TYPE | 277 | 158 | 372 |
Figure S182. Get High-res Image Gene #21: 'Amp Peak 21(13q34)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.31e-22 (Fisher's exact test), Q value = 9.8e-20
Table S183. Gene #21: 'Amp Peak 21(13q34)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| AMP PEAK 21(13Q34) CNV | 16 | 46 | 101 |
| AMP PEAK 21(13Q34) WILD-TYPE | 258 | 367 | 178 |
Figure S183. Get High-res Image Gene #21: 'Amp Peak 21(13q34)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.69e-23 (Fisher's exact test), Q value = 1.3e-20
Table S184. Gene #21: 'Amp Peak 21(13q34)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| AMP PEAK 21(13Q34) CNV | 89 | 24 | 50 |
| AMP PEAK 21(13Q34) WILD-TYPE | 136 | 352 | 315 |
Figure S184. Get High-res Image Gene #21: 'Amp Peak 21(13q34)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2.53e-11 (Fisher's exact test), Q value = 1.4e-08
Table S185. Gene #21: 'Amp Peak 21(13q34)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| AMP PEAK 21(13Q34) CNV | 24 | 15 | 60 |
| AMP PEAK 21(13Q34) WILD-TYPE | 226 | 195 | 136 |
Figure S185. Get High-res Image Gene #21: 'Amp Peak 21(13q34)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 4.44e-14 (Fisher's exact test), Q value = 2.7e-11
Table S186. Gene #21: 'Amp Peak 21(13q34)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| AMP PEAK 21(13Q34) CNV | 13 | 24 | 62 |
| AMP PEAK 21(13Q34) WILD-TYPE | 147 | 287 | 123 |
Figure S186. Get High-res Image Gene #21: 'Amp Peak 21(13q34)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 7.91e-05 (Chi-square test), Q value = 0.022
Table S187. Gene #22: 'Amp Peak 22(14q21.1)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| AMP PEAK 22(14Q21.1) CNV | 5 | 8 | 34 | 11 | 21 | 26 | 6 | 0 |
| AMP PEAK 22(14Q21.1) WILD-TYPE | 16 | 28 | 85 | 85 | 88 | 46 | 14 | 40 |
Figure S187. Get High-res Image Gene #22: 'Amp Peak 22(14q21.1)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 4.07e-13 (Chi-square test), Q value = 2.4e-10
Table S188. Gene #22: 'Amp Peak 22(14q21.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 22(14Q21.1) CNV | 37 | 83 | 23 | 46 | 10 |
| AMP PEAK 22(14Q21.1) WILD-TYPE | 337 | 149 | 56 | 206 | 38 |
Figure S188. Get High-res Image Gene #22: 'Amp Peak 22(14q21.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.93e-05 (Chi-square test), Q value = 0.0087
Table S189. Gene #22: 'Amp Peak 22(14q21.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 22(14Q21.1) CNV | 12 | 23 | 26 | 42 | 4 | 13 |
| AMP PEAK 22(14Q21.1) WILD-TYPE | 97 | 132 | 80 | 94 | 40 | 100 |
Figure S189. Get High-res Image Gene #22: 'Amp Peak 22(14q21.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2.73e-08 (Chi-square test), Q value = 1.2e-05
Table S190. Gene #22: 'Amp Peak 22(14q21.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 22(14Q21.1) CNV | 19 | 19 | 37 | 51 | 63 | 3 | 5 |
| AMP PEAK 22(14Q21.1) WILD-TYPE | 156 | 120 | 180 | 103 | 161 | 44 | 10 |
Figure S190. Get High-res Image Gene #22: 'Amp Peak 22(14q21.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.11e-05 (Fisher's exact test), Q value = 0.0036
Table S191. Gene #22: 'Amp Peak 22(14q21.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 22(14Q21.1) CNV | 43 | 36 | 118 |
| AMP PEAK 22(14Q21.1) WILD-TYPE | 248 | 210 | 316 |
Figure S191. Get High-res Image Gene #22: 'Amp Peak 22(14q21.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2.82e-05 (Fisher's exact test), Q value = 0.0084
Table S192. Gene #22: 'Amp Peak 22(14q21.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| AMP PEAK 22(14Q21.1) CNV | 32 | 106 | 55 |
| AMP PEAK 22(14Q21.1) WILD-TYPE | 242 | 307 | 224 |
Figure S192. Get High-res Image Gene #22: 'Amp Peak 22(14q21.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 4.52e-07 (Chi-square test), Q value = 0.00018
Table S193. Gene #23: 'Amp Peak 23(15q26.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| AMP PEAK 23(15Q26.3) CNV | 3 | 7 | 30 | 32 | 4 | 16 | 8 | 2 |
| AMP PEAK 23(15Q26.3) WILD-TYPE | 18 | 29 | 89 | 64 | 105 | 56 | 12 | 38 |
Figure S193. Get High-res Image Gene #23: 'Amp Peak 23(15q26.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 5.4e-16 (Chi-square test), Q value = 3.6e-13
Table S194. Gene #23: 'Amp Peak 23(15q26.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 23(15Q26.3) CNV | 29 | 56 | 7 | 82 | 3 |
| AMP PEAK 23(15Q26.3) WILD-TYPE | 345 | 176 | 72 | 170 | 45 |
Figure S194. Get High-res Image Gene #23: 'Amp Peak 23(15q26.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.000123 (Chi-square test), Q value = 0.032
Table S195. Gene #23: 'Amp Peak 23(15q26.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 23(15Q26.3) CNV | 29 | 8 | 17 | 28 | 7 | 16 |
| AMP PEAK 23(15Q26.3) WILD-TYPE | 80 | 147 | 89 | 108 | 37 | 97 |
Figure S195. Get High-res Image Gene #23: 'Amp Peak 23(15q26.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00028 (Fisher's exact test), Q value = 0.069
Table S196. Gene #23: 'Amp Peak 23(15q26.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| AMP PEAK 23(15Q26.3) CNV | 46 | 18 | 17 |
| AMP PEAK 23(15Q26.3) WILD-TYPE | 101 | 115 | 100 |
Figure S196. Get High-res Image Gene #23: 'Amp Peak 23(15q26.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 6.56e-09 (Chi-square test), Q value = 3.1e-06
Table S197. Gene #23: 'Amp Peak 23(15q26.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 23(15Q26.3) CNV | 55 | 15 | 18 | 26 | 52 | 3 | 3 |
| AMP PEAK 23(15Q26.3) WILD-TYPE | 120 | 124 | 199 | 128 | 172 | 44 | 12 |
Figure S197. Get High-res Image Gene #23: 'Amp Peak 23(15q26.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.19e-06 (Fisher's exact test), Q value = 0.00044
Table S198. Gene #23: 'Amp Peak 23(15q26.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 23(15Q26.3) CNV | 29 | 67 | 76 |
| AMP PEAK 23(15Q26.3) WILD-TYPE | 262 | 179 | 358 |
Figure S198. Get High-res Image Gene #23: 'Amp Peak 23(15q26.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.02e-08 (Fisher's exact test), Q value = 4.8e-06
Table S199. Gene #23: 'Amp Peak 23(15q26.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| AMP PEAK 23(15Q26.3) CNV | 27 | 62 | 81 |
| AMP PEAK 23(15Q26.3) WILD-TYPE | 247 | 351 | 198 |
Figure S199. Get High-res Image Gene #23: 'Amp Peak 23(15q26.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.62e-10 (Fisher's exact test), Q value = 8.4e-08
Table S200. Gene #23: 'Amp Peak 23(15q26.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| AMP PEAK 23(15Q26.3) CNV | 70 | 35 | 65 |
| AMP PEAK 23(15Q26.3) WILD-TYPE | 155 | 341 | 300 |
Figure S200. Get High-res Image Gene #23: 'Amp Peak 23(15q26.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.000401 (Fisher's exact test), Q value = 0.097
Table S201. Gene #23: 'Amp Peak 23(15q26.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| AMP PEAK 23(15Q26.3) CNV | 15 | 52 | 47 |
| AMP PEAK 23(15Q26.3) WILD-TYPE | 145 | 259 | 138 |
Figure S201. Get High-res Image Gene #23: 'Amp Peak 23(15q26.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.1e-15 (Chi-square test), Q value = 7.1e-13
Table S202. Gene #24: 'Amp Peak 24(17q12)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| AMP PEAK 24(17Q12) CNV | 9 | 11 | 52 | 19 | 14 | 49 | 7 | 4 |
| AMP PEAK 24(17Q12) WILD-TYPE | 12 | 25 | 67 | 77 | 95 | 23 | 13 | 36 |
Figure S202. Get High-res Image Gene #24: 'Amp Peak 24(17q12)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 1.34e-05 (Fisher's exact test), Q value = 0.0042
Table S203. Gene #24: 'Amp Peak 24(17q12)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| AMP PEAK 24(17Q12) CNV | 20 | 39 | 106 |
| AMP PEAK 24(17Q12) WILD-TYPE | 102 | 86 | 160 |
Figure S203. Get High-res Image Gene #24: 'Amp Peak 24(17q12)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 3.76e-36 (Chi-square test), Q value = 3e-33
Table S204. Gene #24: 'Amp Peak 24(17q12)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 24(17Q12) CNV | 60 | 152 | 19 | 64 | 16 |
| AMP PEAK 24(17Q12) WILD-TYPE | 314 | 80 | 60 | 188 | 32 |
Figure S204. Get High-res Image Gene #24: 'Amp Peak 24(17q12)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 7.95e-09 (Chi-square test), Q value = 3.7e-06
Table S205. Gene #24: 'Amp Peak 24(17q12)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 24(17Q12) CNV | 28 | 30 | 48 | 66 | 10 | 25 |
| AMP PEAK 24(17Q12) WILD-TYPE | 81 | 125 | 58 | 70 | 34 | 88 |
Figure S205. Get High-res Image Gene #24: 'Amp Peak 24(17q12)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 8.01e-26 (Chi-square test), Q value = 6.2e-23
Table S206. Gene #24: 'Amp Peak 24(17q12)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 24(17Q12) CNV | 34 | 28 | 39 | 96 | 101 | 7 | 4 |
| AMP PEAK 24(17Q12) WILD-TYPE | 141 | 111 | 178 | 58 | 123 | 40 | 11 |
Figure S206. Get High-res Image Gene #24: 'Amp Peak 24(17q12)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2.4e-05 (Fisher's exact test), Q value = 0.0073
Table S207. Gene #24: 'Amp Peak 24(17q12)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 24(17Q12) CNV | 63 | 84 | 162 |
| AMP PEAK 24(17Q12) WILD-TYPE | 228 | 162 | 272 |
Figure S207. Get High-res Image Gene #24: 'Amp Peak 24(17q12)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 3.76e-07 (Fisher's exact test), Q value = 0.00015
Table S208. Gene #24: 'Amp Peak 24(17q12)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| AMP PEAK 24(17Q12) CNV | 64 | 88 | 152 |
| AMP PEAK 24(17Q12) WILD-TYPE | 161 | 288 | 213 |
Figure S208. Get High-res Image Gene #24: 'Amp Peak 24(17q12)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 6.72e-16 (Chi-square test), Q value = 4.4e-13
Table S209. Gene #25: 'Amp Peak 25(17q23.1)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| AMP PEAK 25(17Q23.1) CNV | 9 | 17 | 80 | 30 | 16 | 43 | 11 | 9 |
| AMP PEAK 25(17Q23.1) WILD-TYPE | 12 | 19 | 39 | 66 | 93 | 29 | 9 | 31 |
Figure S209. Get High-res Image Gene #25: 'Amp Peak 25(17q23.1)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.00033 (Fisher's exact test), Q value = 0.08
Table S210. Gene #25: 'Amp Peak 25(17q23.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| AMP PEAK 25(17Q23.1) CNV | 35 | 48 | 132 |
| AMP PEAK 25(17Q23.1) WILD-TYPE | 87 | 77 | 134 |
Figure S210. Get High-res Image Gene #25: 'Amp Peak 25(17q23.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1.11e-42 (Chi-square test), Q value = 9.1e-40
Table S211. Gene #25: 'Amp Peak 25(17q23.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 25(17Q23.1) CNV | 69 | 176 | 22 | 110 | 20 |
| AMP PEAK 25(17Q23.1) WILD-TYPE | 305 | 56 | 57 | 142 | 28 |
Figure S211. Get High-res Image Gene #25: 'Amp Peak 25(17q23.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.82e-10 (Chi-square test), Q value = 9.4e-08
Table S212. Gene #25: 'Amp Peak 25(17q23.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 25(17Q23.1) CNV | 45 | 37 | 49 | 84 | 14 | 31 |
| AMP PEAK 25(17Q23.1) WILD-TYPE | 64 | 118 | 57 | 52 | 30 | 82 |
Figure S212. Get High-res Image Gene #25: 'Amp Peak 25(17q23.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 4.86e-23 (Chi-square test), Q value = 3.6e-20
Table S213. Gene #25: 'Amp Peak 25(17q23.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 25(17Q23.1) CNV | 62 | 39 | 43 | 83 | 144 | 13 | 8 |
| AMP PEAK 25(17Q23.1) WILD-TYPE | 113 | 100 | 174 | 71 | 80 | 34 | 7 |
Figure S213. Get High-res Image Gene #25: 'Amp Peak 25(17q23.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.38e-06 (Fisher's exact test), Q value = 5e-04
Table S214. Gene #25: 'Amp Peak 25(17q23.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 25(17Q23.1) CNV | 86 | 95 | 211 |
| AMP PEAK 25(17Q23.1) WILD-TYPE | 205 | 151 | 223 |
Figure S214. Get High-res Image Gene #25: 'Amp Peak 25(17q23.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 3.21e-08 (Fisher's exact test), Q value = 1.4e-05
Table S215. Gene #25: 'Amp Peak 25(17q23.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| AMP PEAK 25(17Q23.1) CNV | 71 | 185 | 133 |
| AMP PEAK 25(17Q23.1) WILD-TYPE | 203 | 228 | 146 |
Figure S215. Get High-res Image Gene #25: 'Amp Peak 25(17q23.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3.29e-11 (Fisher's exact test), Q value = 1.8e-08
Table S216. Gene #25: 'Amp Peak 25(17q23.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| AMP PEAK 25(17Q23.1) CNV | 96 | 103 | 190 |
| AMP PEAK 25(17Q23.1) WILD-TYPE | 129 | 273 | 175 |
Figure S216. Get High-res Image Gene #25: 'Amp Peak 25(17q23.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 6.52e-06 (Chi-square test), Q value = 0.0022
Table S217. Gene #26: 'Amp Peak 26(19p13.12)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| AMP PEAK 26(19P13.12) CNV | 5 | 5 | 22 | 41 | 16 | 11 | 6 | 4 |
| AMP PEAK 26(19P13.12) WILD-TYPE | 16 | 31 | 97 | 55 | 93 | 61 | 14 | 36 |
Figure S217. Get High-res Image Gene #26: 'Amp Peak 26(19p13.12)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 5.01e-05 (Fisher's exact test), Q value = 0.014
Table S218. Gene #26: 'Amp Peak 26(19p13.12)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| AMP PEAK 26(19P13.12) CNV | 18 | 45 | 47 |
| AMP PEAK 26(19P13.12) WILD-TYPE | 104 | 80 | 219 |
Figure S218. Get High-res Image Gene #26: 'Amp Peak 26(19p13.12)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1.96e-15 (Chi-square test), Q value = 1.3e-12
Table S219. Gene #26: 'Amp Peak 26(19p13.12)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 26(19P13.12) CNV | 37 | 40 | 26 | 93 | 11 |
| AMP PEAK 26(19P13.12) WILD-TYPE | 337 | 192 | 53 | 159 | 37 |
Figure S219. Get High-res Image Gene #26: 'Amp Peak 26(19p13.12)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.18e-06 (Chi-square test), Q value = 0.00077
Table S220. Gene #26: 'Amp Peak 26(19p13.12)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 26(19P13.12) CNV | 43 | 18 | 20 | 24 | 6 | 22 |
| AMP PEAK 26(19P13.12) WILD-TYPE | 66 | 137 | 86 | 112 | 38 | 91 |
Figure S220. Get High-res Image Gene #26: 'Amp Peak 26(19p13.12)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.000125 (Fisher's exact test), Q value = 0.033
Table S221. Gene #26: 'Amp Peak 26(19p13.12)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| AMP PEAK 26(19P13.12) CNV | 51 | 25 | 16 |
| AMP PEAK 26(19P13.12) WILD-TYPE | 96 | 108 | 101 |
Figure S221. Get High-res Image Gene #26: 'Amp Peak 26(19p13.12)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 4.1e-11 (Chi-square test), Q value = 2.2e-08
Table S222. Gene #26: 'Amp Peak 26(19p13.12)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 26(19P13.12) CNV | 71 | 27 | 28 | 28 | 38 | 4 | 6 |
| AMP PEAK 26(19P13.12) WILD-TYPE | 104 | 112 | 189 | 126 | 186 | 43 | 9 |
Figure S222. Get High-res Image Gene #26: 'Amp Peak 26(19p13.12)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 6.64e-08 (Fisher's exact test), Q value = 2.9e-05
Table S223. Gene #26: 'Amp Peak 26(19p13.12)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 26(19P13.12) CNV | 41 | 83 | 78 |
| AMP PEAK 26(19P13.12) WILD-TYPE | 250 | 163 | 356 |
Figure S223. Get High-res Image Gene #26: 'Amp Peak 26(19p13.12)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.62e-08 (Fisher's exact test), Q value = 7.4e-06
Table S224. Gene #26: 'Amp Peak 26(19p13.12)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| AMP PEAK 26(19P13.12) CNV | 44 | 63 | 93 |
| AMP PEAK 26(19P13.12) WILD-TYPE | 230 | 350 | 186 |
Figure S224. Get High-res Image Gene #26: 'Amp Peak 26(19p13.12)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3.58e-10 (Fisher's exact test), Q value = 1.8e-07
Table S225. Gene #26: 'Amp Peak 26(19p13.12)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| AMP PEAK 26(19P13.12) CNV | 83 | 55 | 62 |
| AMP PEAK 26(19P13.12) WILD-TYPE | 142 | 321 | 303 |
Figure S225. Get High-res Image Gene #26: 'Amp Peak 26(19p13.12)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 4.53e-06 (Fisher's exact test), Q value = 0.0015
Table S226. Gene #26: 'Amp Peak 26(19p13.12)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| AMP PEAK 26(19P13.12) CNV | 37 | 37 | 66 |
| AMP PEAK 26(19P13.12) WILD-TYPE | 213 | 173 | 130 |
Figure S226. Get High-res Image Gene #26: 'Amp Peak 26(19p13.12)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 7.44e-06 (Fisher's exact test), Q value = 0.0025
Table S227. Gene #26: 'Amp Peak 26(19p13.12)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| AMP PEAK 26(19P13.12) CNV | 24 | 53 | 63 |
| AMP PEAK 26(19P13.12) WILD-TYPE | 136 | 258 | 122 |
Figure S227. Get High-res Image Gene #26: 'Amp Peak 26(19p13.12)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 4.35e-12 (Chi-square test), Q value = 2.5e-09
Table S228. Gene #27: 'Amp Peak 27(19q12)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| AMP PEAK 27(19Q12) CNV | 4 | 4 | 29 | 56 | 15 | 20 | 7 | 5 |
| AMP PEAK 27(19Q12) WILD-TYPE | 17 | 32 | 90 | 40 | 94 | 52 | 13 | 35 |
Figure S228. Get High-res Image Gene #27: 'Amp Peak 27(19q12)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 9.44e-11 (Fisher's exact test), Q value = 4.9e-08
Table S229. Gene #27: 'Amp Peak 27(19q12)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| AMP PEAK 27(19Q12) CNV | 19 | 64 | 57 |
| AMP PEAK 27(19Q12) WILD-TYPE | 103 | 61 | 209 |
Figure S229. Get High-res Image Gene #27: 'Amp Peak 27(19q12)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1.88e-27 (Chi-square test), Q value = 1.5e-24
Table S230. Gene #27: 'Amp Peak 27(19q12)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 27(19Q12) CNV | 37 | 47 | 29 | 124 | 14 |
| AMP PEAK 27(19Q12) WILD-TYPE | 337 | 185 | 50 | 128 | 34 |
Figure S230. Get High-res Image Gene #27: 'Amp Peak 27(19q12)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.29e-12 (Chi-square test), Q value = 7.5e-10
Table S231. Gene #27: 'Amp Peak 27(19q12)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 27(19Q12) CNV | 57 | 19 | 24 | 34 | 4 | 24 |
| AMP PEAK 27(19Q12) WILD-TYPE | 52 | 136 | 82 | 102 | 40 | 89 |
Figure S231. Get High-res Image Gene #27: 'Amp Peak 27(19q12)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 6.19e-07 (Fisher's exact test), Q value = 0.00024
Table S232. Gene #27: 'Amp Peak 27(19q12)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| AMP PEAK 27(19Q12) CNV | 64 | 23 | 23 |
| AMP PEAK 27(19Q12) WILD-TYPE | 83 | 110 | 94 |
Figure S232. Get High-res Image Gene #27: 'Amp Peak 27(19q12)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 9.68e-07 (Fisher's exact test), Q value = 0.00036
Table S233. Gene #27: 'Amp Peak 27(19q12)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| AMP PEAK 27(19Q12) CNV | 29 | 24 | 57 |
| AMP PEAK 27(19Q12) WILD-TYPE | 132 | 86 | 69 |
Figure S233. Get High-res Image Gene #27: 'Amp Peak 27(19q12)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 4.73e-23 (Chi-square test), Q value = 3.5e-20
Table S234. Gene #27: 'Amp Peak 27(19q12)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 27(19Q12) CNV | 97 | 24 | 27 | 40 | 48 | 5 | 7 |
| AMP PEAK 27(19Q12) WILD-TYPE | 78 | 115 | 190 | 114 | 176 | 42 | 8 |
Figure S234. Get High-res Image Gene #27: 'Amp Peak 27(19q12)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.94e-18 (Fisher's exact test), Q value = 1.3e-15
Table S235. Gene #27: 'Amp Peak 27(19q12)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 27(19Q12) CNV | 43 | 117 | 88 |
| AMP PEAK 27(19Q12) WILD-TYPE | 248 | 129 | 346 |
Figure S235. Get High-res Image Gene #27: 'Amp Peak 27(19q12)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 4.21e-18 (Fisher's exact test), Q value = 2.9e-15
Table S236. Gene #27: 'Amp Peak 27(19q12)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| AMP PEAK 27(19Q12) CNV | 41 | 78 | 127 |
| AMP PEAK 27(19Q12) WILD-TYPE | 233 | 335 | 152 |
Figure S236. Get High-res Image Gene #27: 'Amp Peak 27(19q12)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 6.62e-18 (Fisher's exact test), Q value = 4.5e-15
Table S237. Gene #27: 'Amp Peak 27(19q12)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| AMP PEAK 27(19Q12) CNV | 109 | 59 | 78 |
| AMP PEAK 27(19Q12) WILD-TYPE | 116 | 317 | 287 |
Figure S237. Get High-res Image Gene #27: 'Amp Peak 27(19q12)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.54e-12 (Fisher's exact test), Q value = 9e-10
Table S238. Gene #27: 'Amp Peak 27(19q12)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| AMP PEAK 27(19Q12) CNV | 42 | 37 | 89 |
| AMP PEAK 27(19Q12) WILD-TYPE | 208 | 173 | 107 |
Figure S238. Get High-res Image Gene #27: 'Amp Peak 27(19q12)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1.31e-11 (Fisher's exact test), Q value = 7.2e-09
Table S239. Gene #27: 'Amp Peak 27(19q12)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| AMP PEAK 27(19Q12) CNV | 26 | 58 | 84 |
| AMP PEAK 27(19Q12) WILD-TYPE | 134 | 253 | 101 |
Figure S239. Get High-res Image Gene #27: 'Amp Peak 27(19q12)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00013 (Chi-square test), Q value = 0.034
Table S240. Gene #28: 'Amp Peak 28(19q13.42)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| AMP PEAK 28(19Q13.42) CNV | 5 | 8 | 36 | 41 | 16 | 21 | 10 | 6 |
| AMP PEAK 28(19Q13.42) WILD-TYPE | 16 | 28 | 83 | 55 | 93 | 51 | 10 | 34 |
Figure S240. Get High-res Image Gene #28: 'Amp Peak 28(19q13.42)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 3.23e-15 (Chi-square test), Q value = 2.1e-12
Table S241. Gene #28: 'Amp Peak 28(19q13.42)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 28(19Q13.42) CNV | 40 | 67 | 30 | 96 | 16 |
| AMP PEAK 28(19Q13.42) WILD-TYPE | 334 | 165 | 49 | 156 | 32 |
Figure S241. Get High-res Image Gene #28: 'Amp Peak 28(19q13.42)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3.02e-06 (Chi-square test), Q value = 0.0011
Table S242. Gene #28: 'Amp Peak 28(19q13.42)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 28(19Q13.42) CNV | 35 | 21 | 27 | 49 | 5 | 17 |
| AMP PEAK 28(19Q13.42) WILD-TYPE | 74 | 134 | 79 | 87 | 39 | 96 |
Figure S242. Get High-res Image Gene #28: 'Amp Peak 28(19q13.42)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.000605 (Fisher's exact test), Q value = 0.14
Table S243. Gene #28: 'Amp Peak 28(19q13.42)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| AMP PEAK 28(19Q13.42) CNV | 58 | 28 | 25 |
| AMP PEAK 28(19Q13.42) WILD-TYPE | 89 | 105 | 92 |
Figure S243. Get High-res Image Gene #28: 'Amp Peak 28(19q13.42)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 1.47e-06 (Chi-square test), Q value = 0.00054
Table S244. Gene #28: 'Amp Peak 28(19q13.42)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 28(19Q13.42) CNV | 62 | 32 | 30 | 41 | 66 | 6 | 8 |
| AMP PEAK 28(19Q13.42) WILD-TYPE | 113 | 107 | 187 | 113 | 158 | 41 | 7 |
Figure S244. Get High-res Image Gene #28: 'Amp Peak 28(19q13.42)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.000126 (Fisher's exact test), Q value = 0.033
Table S245. Gene #28: 'Amp Peak 28(19q13.42)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| AMP PEAK 28(19Q13.42) CNV | 51 | 98 | 95 |
| AMP PEAK 28(19Q13.42) WILD-TYPE | 223 | 315 | 184 |
Figure S245. Get High-res Image Gene #28: 'Amp Peak 28(19q13.42)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.000427 (Fisher's exact test), Q value = 0.1
Table S246. Gene #28: 'Amp Peak 28(19q13.42)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| AMP PEAK 28(19Q13.42) CNV | 77 | 74 | 93 |
| AMP PEAK 28(19Q13.42) WILD-TYPE | 148 | 302 | 272 |
Figure S246. Get High-res Image Gene #28: 'Amp Peak 28(19q13.42)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.81e-10 (Chi-square test), Q value = 9.3e-08
Table S247. Gene #29: 'Amp Peak 29(20q13.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| AMP PEAK 29(20Q13.2) CNV | 12 | 18 | 84 | 52 | 35 | 49 | 15 | 9 |
| AMP PEAK 29(20Q13.2) WILD-TYPE | 9 | 18 | 35 | 44 | 74 | 23 | 5 | 31 |
Figure S247. Get High-res Image Gene #29: 'Amp Peak 29(20q13.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 3.67e-05 (Fisher's exact test), Q value = 0.011
Table S248. Gene #29: 'Amp Peak 29(20q13.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| AMP PEAK 29(20Q13.2) CNV | 44 | 69 | 161 |
| AMP PEAK 29(20Q13.2) WILD-TYPE | 78 | 56 | 105 |
Figure S248. Get High-res Image Gene #29: 'Amp Peak 29(20q13.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 4.55e-51 (Chi-square test), Q value = 3.8e-48
Table S249. Gene #29: 'Amp Peak 29(20q13.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| AMP PEAK 29(20Q13.2) CNV | 76 | 185 | 43 | 167 | 26 |
| AMP PEAK 29(20Q13.2) WILD-TYPE | 298 | 47 | 36 | 85 | 22 |
Figure S249. Get High-res Image Gene #29: 'Amp Peak 29(20q13.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3.2e-23 (Chi-square test), Q value = 2.4e-20
Table S250. Gene #29: 'Amp Peak 29(20q13.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| AMP PEAK 29(20Q13.2) CNV | 65 | 37 | 59 | 107 | 12 | 36 |
| AMP PEAK 29(20Q13.2) WILD-TYPE | 44 | 118 | 47 | 29 | 32 | 77 |
Figure S250. Get High-res Image Gene #29: 'Amp Peak 29(20q13.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.000604 (Fisher's exact test), Q value = 0.14
Table S251. Gene #29: 'Amp Peak 29(20q13.2)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| AMP PEAK 29(20Q13.2) CNV | 99 | 67 | 53 |
| AMP PEAK 29(20Q13.2) WILD-TYPE | 48 | 66 | 64 |
Figure S251. Get High-res Image Gene #29: 'Amp Peak 29(20q13.2)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 1.88e-18 (Chi-square test), Q value = 1.3e-15
Table S252. Gene #29: 'Amp Peak 29(20q13.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| AMP PEAK 29(20Q13.2) CNV | 95 | 46 | 71 | 98 | 156 | 15 | 9 |
| AMP PEAK 29(20Q13.2) WILD-TYPE | 80 | 93 | 146 | 56 | 68 | 32 | 6 |
Figure S252. Get High-res Image Gene #29: 'Amp Peak 29(20q13.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.57e-12 (Fisher's exact test), Q value = 9.2e-10
Table S253. Gene #29: 'Amp Peak 29(20q13.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| AMP PEAK 29(20Q13.2) CNV | 95 | 137 | 258 |
| AMP PEAK 29(20Q13.2) WILD-TYPE | 196 | 109 | 176 |
Figure S253. Get High-res Image Gene #29: 'Amp Peak 29(20q13.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.19e-12 (Fisher's exact test), Q value = 7e-10
Table S254. Gene #29: 'Amp Peak 29(20q13.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| AMP PEAK 29(20Q13.2) CNV | 88 | 233 | 169 |
| AMP PEAK 29(20Q13.2) WILD-TYPE | 186 | 180 | 110 |
Figure S254. Get High-res Image Gene #29: 'Amp Peak 29(20q13.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3.96e-11 (Fisher's exact test), Q value = 2.1e-08
Table S255. Gene #29: 'Amp Peak 29(20q13.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| AMP PEAK 29(20Q13.2) CNV | 128 | 139 | 223 |
| AMP PEAK 29(20Q13.2) WILD-TYPE | 97 | 237 | 142 |
Figure S255. Get High-res Image Gene #29: 'Amp Peak 29(20q13.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 3.08e-08 (Fisher's exact test), Q value = 1.4e-05
Table S256. Gene #29: 'Amp Peak 29(20q13.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| AMP PEAK 29(20Q13.2) CNV | 137 | 71 | 120 |
| AMP PEAK 29(20Q13.2) WILD-TYPE | 113 | 139 | 76 |
Figure S256. Get High-res Image Gene #29: 'Amp Peak 29(20q13.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.000451 (Fisher's exact test), Q value = 0.11
Table S257. Gene #29: 'Amp Peak 29(20q13.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| AMP PEAK 29(20Q13.2) CNV | 59 | 164 | 105 |
| AMP PEAK 29(20Q13.2) WILD-TYPE | 101 | 147 | 80 |
Figure S257. Get High-res Image Gene #29: 'Amp Peak 29(20q13.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 7.82e-05 (Chi-square test), Q value = 0.021
Table S258. Gene #30: 'Del Peak 1(1p36.13)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 1(1P36.13) CNV | 8 | 12 | 61 | 41 | 31 | 46 | 7 | 12 |
| DEL PEAK 1(1P36.13) WILD-TYPE | 13 | 24 | 58 | 55 | 78 | 26 | 13 | 28 |
Figure S258. Get High-res Image Gene #30: 'Del Peak 1(1p36.13)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.00012 (Fisher's exact test), Q value = 0.032
Table S259. Gene #30: 'Del Peak 1(1p36.13)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 1(1P36.13) CNV | 34 | 50 | 134 |
| DEL PEAK 1(1P36.13) WILD-TYPE | 88 | 75 | 132 |
Figure S259. Get High-res Image Gene #30: 'Del Peak 1(1p36.13)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 7.61e-31 (Chi-square test), Q value = 6e-28
Table S260. Gene #30: 'Del Peak 1(1p36.13)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 1(1P36.13) CNV | 67 | 142 | 49 | 130 | 19 |
| DEL PEAK 1(1P36.13) WILD-TYPE | 307 | 90 | 30 | 122 | 29 |
Figure S260. Get High-res Image Gene #30: 'Del Peak 1(1p36.13)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.59e-12 (Chi-square test), Q value = 9.2e-10
Table S261. Gene #30: 'Del Peak 1(1p36.13)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 1(1P36.13) CNV | 50 | 35 | 64 | 74 | 13 | 28 |
| DEL PEAK 1(1P36.13) WILD-TYPE | 59 | 120 | 42 | 62 | 31 | 85 |
Figure S261. Get High-res Image Gene #30: 'Del Peak 1(1p36.13)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 5.3e-09 (Chi-square test), Q value = 2.5e-06
Table S262. Gene #30: 'Del Peak 1(1p36.13)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 1(1P36.13) CNV | 71 | 33 | 73 | 85 | 117 | 14 | 8 |
| DEL PEAK 1(1P36.13) WILD-TYPE | 104 | 106 | 144 | 69 | 107 | 33 | 7 |
Figure S262. Get High-res Image Gene #30: 'Del Peak 1(1p36.13)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.12e-06 (Fisher's exact test), Q value = 0.00042
Table S263. Gene #30: 'Del Peak 1(1p36.13)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 1(1P36.13) CNV | 89 | 96 | 216 |
| DEL PEAK 1(1P36.13) WILD-TYPE | 202 | 150 | 218 |
Figure S263. Get High-res Image Gene #30: 'Del Peak 1(1p36.13)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2.49e-06 (Fisher's exact test), Q value = 0.00087
Table S264. Gene #30: 'Del Peak 1(1p36.13)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 1(1P36.13) CNV | 77 | 187 | 129 |
| DEL PEAK 1(1P36.13) WILD-TYPE | 197 | 226 | 150 |
Figure S264. Get High-res Image Gene #30: 'Del Peak 1(1p36.13)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.000166 (Fisher's exact test), Q value = 0.042
Table S265. Gene #30: 'Del Peak 1(1p36.13)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 1(1P36.13) CNV | 97 | 123 | 173 |
| DEL PEAK 1(1P36.13) WILD-TYPE | 128 | 253 | 192 |
Figure S265. Get High-res Image Gene #30: 'Del Peak 1(1p36.13)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.000233 (Fisher's exact test), Q value = 0.057
Table S266. Gene #31: 'Del Peak 2(1p22.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 2(1P22.1) CNV | 35 | 30 | 115 |
| DEL PEAK 2(1P22.1) WILD-TYPE | 87 | 95 | 151 |
Figure S266. Get High-res Image Gene #31: 'Del Peak 2(1p22.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 8.39e-21 (Chi-square test), Q value = 6.1e-18
Table S267. Gene #31: 'Del Peak 2(1p22.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 2(1P22.1) CNV | 69 | 117 | 49 | 79 | 11 |
| DEL PEAK 2(1P22.1) WILD-TYPE | 305 | 115 | 30 | 173 | 37 |
Figure S267. Get High-res Image Gene #31: 'Del Peak 2(1p22.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.31e-07 (Chi-square test), Q value = 5.6e-05
Table S268. Gene #31: 'Del Peak 2(1p22.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 2(1P22.1) CNV | 25 | 37 | 53 | 57 | 11 | 22 |
| DEL PEAK 2(1P22.1) WILD-TYPE | 84 | 118 | 53 | 79 | 33 | 91 |
Figure S268. Get High-res Image Gene #31: 'Del Peak 2(1p22.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 3.47e-09 (Chi-square test), Q value = 1.7e-06
Table S269. Gene #31: 'Del Peak 2(1p22.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 2(1P22.1) CNV | 36 | 31 | 71 | 75 | 96 | 9 | 4 |
| DEL PEAK 2(1P22.1) WILD-TYPE | 139 | 108 | 146 | 79 | 128 | 38 | 11 |
Figure S269. Get High-res Image Gene #31: 'Del Peak 2(1p22.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.8e-08 (Fisher's exact test), Q value = 8.1e-06
Table S270. Gene #31: 'Del Peak 2(1p22.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 2(1P22.1) CNV | 78 | 57 | 187 |
| DEL PEAK 2(1P22.1) WILD-TYPE | 213 | 189 | 247 |
Figure S270. Get High-res Image Gene #31: 'Del Peak 2(1p22.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.51e-06 (Chi-square test), Q value = 0.00055
Table S271. Gene #32: 'Del Peak 3(2q37.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 3(2Q37.3) CNV | 5 | 10 | 40 | 47 | 24 | 28 | 6 | 0 |
| DEL PEAK 3(2Q37.3) WILD-TYPE | 16 | 26 | 79 | 49 | 85 | 44 | 14 | 40 |
Figure S271. Get High-res Image Gene #32: 'Del Peak 3(2q37.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 3.28e-09 (Fisher's exact test), Q value = 1.6e-06
Table S272. Gene #32: 'Del Peak 3(2q37.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 3(2Q37.3) CNV | 14 | 58 | 88 |
| DEL PEAK 3(2Q37.3) WILD-TYPE | 108 | 67 | 178 |
Figure S272. Get High-res Image Gene #32: 'Del Peak 3(2q37.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 2.31e-22 (Chi-square test), Q value = 1.7e-19
Table S273. Gene #32: 'Del Peak 3(2q37.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 3(2Q37.3) CNV | 39 | 82 | 29 | 117 | 16 |
| DEL PEAK 3(2Q37.3) WILD-TYPE | 335 | 150 | 50 | 135 | 32 |
Figure S273. Get High-res Image Gene #32: 'Del Peak 3(2q37.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.98e-11 (Chi-square test), Q value = 1.6e-08
Table S274. Gene #32: 'Del Peak 3(2q37.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 3(2Q37.3) CNV | 48 | 21 | 28 | 52 | 5 | 14 |
| DEL PEAK 3(2Q37.3) WILD-TYPE | 61 | 134 | 78 | 84 | 39 | 99 |
Figure S274. Get High-res Image Gene #32: 'Del Peak 3(2q37.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.03e-08 (Fisher's exact test), Q value = 4.8e-06
Table S275. Gene #32: 'Del Peak 3(2q37.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| DEL PEAK 3(2Q37.3) CNV | 70 | 38 | 16 |
| DEL PEAK 3(2Q37.3) WILD-TYPE | 77 | 95 | 101 |
Figure S275. Get High-res Image Gene #32: 'Del Peak 3(2q37.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 1.11e-07 (Fisher's exact test), Q value = 4.7e-05
Table S276. Gene #32: 'Del Peak 3(2q37.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| DEL PEAK 3(2Q37.3) CNV | 56 | 13 | 55 |
| DEL PEAK 3(2Q37.3) WILD-TYPE | 105 | 97 | 71 |
Figure S276. Get High-res Image Gene #32: 'Del Peak 3(2q37.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 1.63e-11 (Chi-square test), Q value = 9e-09
Table S277. Gene #32: 'Del Peak 3(2q37.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 3(2Q37.3) CNV | 78 | 20 | 44 | 54 | 74 | 2 | 4 |
| DEL PEAK 3(2Q37.3) WILD-TYPE | 97 | 119 | 173 | 100 | 150 | 45 | 11 |
Figure S277. Get High-res Image Gene #32: 'Del Peak 3(2q37.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.29e-11 (Fisher's exact test), Q value = 7.1e-09
Table S278. Gene #32: 'Del Peak 3(2q37.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 3(2Q37.3) CNV | 44 | 104 | 128 |
| DEL PEAK 3(2Q37.3) WILD-TYPE | 247 | 142 | 306 |
Figure S278. Get High-res Image Gene #32: 'Del Peak 3(2q37.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 6.95e-11 (Fisher's exact test), Q value = 3.7e-08
Table S279. Gene #32: 'Del Peak 3(2q37.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 3(2Q37.3) CNV | 42 | 118 | 115 |
| DEL PEAK 3(2Q37.3) WILD-TYPE | 232 | 295 | 164 |
Figure S279. Get High-res Image Gene #32: 'Del Peak 3(2q37.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 5.85e-10 (Fisher's exact test), Q value = 2.9e-07
Table S280. Gene #32: 'Del Peak 3(2q37.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 3(2Q37.3) CNV | 94 | 67 | 114 |
| DEL PEAK 3(2Q37.3) WILD-TYPE | 131 | 309 | 251 |
Figure S280. Get High-res Image Gene #32: 'Del Peak 3(2q37.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.73e-13 (Fisher's exact test), Q value = 1e-10
Table S281. Gene #32: 'Del Peak 3(2q37.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 3(2Q37.3) CNV | 63 | 26 | 90 |
| DEL PEAK 3(2Q37.3) WILD-TYPE | 187 | 184 | 106 |
Figure S281. Get High-res Image Gene #32: 'Del Peak 3(2q37.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1.06e-05 (Fisher's exact test), Q value = 0.0034
Table S282. Gene #32: 'Del Peak 3(2q37.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 3(2Q37.3) CNV | 27 | 79 | 73 |
| DEL PEAK 3(2Q37.3) WILD-TYPE | 133 | 232 | 112 |
Figure S282. Get High-res Image Gene #32: 'Del Peak 3(2q37.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 3.85e-11 (Chi-square test), Q value = 2.1e-08
Table S283. Gene #33: 'Del Peak 4(3p14.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 4(3P14.3) CNV | 5 | 12 | 39 | 49 | 7 | 34 | 9 | 7 |
| DEL PEAK 4(3P14.3) WILD-TYPE | 16 | 24 | 80 | 47 | 102 | 38 | 11 | 33 |
Figure S283. Get High-res Image Gene #33: 'Del Peak 4(3p14.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 5.41e-08 (Fisher's exact test), Q value = 2.3e-05
Table S284. Gene #33: 'Del Peak 4(3p14.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 4(3P14.3) CNV | 27 | 66 | 69 |
| DEL PEAK 4(3P14.3) WILD-TYPE | 95 | 59 | 197 |
Figure S284. Get High-res Image Gene #33: 'Del Peak 4(3p14.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 7.55e-35 (Chi-square test), Q value = 6e-32
Table S285. Gene #33: 'Del Peak 4(3p14.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 4(3P14.3) CNV | 48 | 81 | 16 | 149 | 6 |
| DEL PEAK 4(3P14.3) WILD-TYPE | 326 | 151 | 63 | 103 | 42 |
Figure S285. Get High-res Image Gene #33: 'Del Peak 4(3p14.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3.98e-16 (Chi-square test), Q value = 2.6e-13
Table S286. Gene #33: 'Del Peak 4(3p14.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 4(3P14.3) CNV | 56 | 11 | 46 | 48 | 10 | 22 |
| DEL PEAK 4(3P14.3) WILD-TYPE | 53 | 144 | 60 | 88 | 34 | 91 |
Figure S286. Get High-res Image Gene #33: 'Del Peak 4(3p14.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2.51e-09 (Fisher's exact test), Q value = 1.2e-06
Table S287. Gene #33: 'Del Peak 4(3p14.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| DEL PEAK 4(3P14.3) CNV | 78 | 25 | 32 |
| DEL PEAK 4(3P14.3) WILD-TYPE | 69 | 108 | 85 |
Figure S287. Get High-res Image Gene #33: 'Del Peak 4(3p14.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 1.08e-05 (Fisher's exact test), Q value = 0.0035
Table S288. Gene #33: 'Del Peak 4(3p14.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| DEL PEAK 4(3P14.3) CNV | 40 | 31 | 64 |
| DEL PEAK 4(3P14.3) WILD-TYPE | 121 | 79 | 62 |
Figure S288. Get High-res Image Gene #33: 'Del Peak 4(3p14.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 1.56e-19 (Chi-square test), Q value = 1.1e-16
Table S289. Gene #33: 'Del Peak 4(3p14.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 4(3P14.3) CNV | 87 | 29 | 22 | 68 | 71 | 8 | 8 |
| DEL PEAK 4(3P14.3) WILD-TYPE | 88 | 110 | 195 | 86 | 153 | 39 | 7 |
Figure S289. Get High-res Image Gene #33: 'Del Peak 4(3p14.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 3.75e-13 (Fisher's exact test), Q value = 2.3e-10
Table S290. Gene #33: 'Del Peak 4(3p14.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 4(3P14.3) CNV | 56 | 120 | 117 |
| DEL PEAK 4(3P14.3) WILD-TYPE | 235 | 126 | 317 |
Figure S290. Get High-res Image Gene #33: 'Del Peak 4(3p14.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2.75e-16 (Fisher's exact test), Q value = 1.8e-13
Table S291. Gene #33: 'Del Peak 4(3p14.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 4(3P14.3) CNV | 45 | 111 | 136 |
| DEL PEAK 4(3P14.3) WILD-TYPE | 229 | 302 | 143 |
Figure S291. Get High-res Image Gene #33: 'Del Peak 4(3p14.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3.92e-15 (Fisher's exact test), Q value = 2.5e-12
Table S292. Gene #33: 'Del Peak 4(3p14.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 4(3P14.3) CNV | 110 | 66 | 116 |
| DEL PEAK 4(3P14.3) WILD-TYPE | 115 | 310 | 249 |
Figure S292. Get High-res Image Gene #33: 'Del Peak 4(3p14.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 7.21e-11 (Fisher's exact test), Q value = 3.8e-08
Table S293. Gene #33: 'Del Peak 4(3p14.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 4(3P14.3) CNV | 62 | 39 | 95 |
| DEL PEAK 4(3P14.3) WILD-TYPE | 188 | 171 | 101 |
Figure S293. Get High-res Image Gene #33: 'Del Peak 4(3p14.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 2.58e-10 (Fisher's exact test), Q value = 1.3e-07
Table S294. Gene #33: 'Del Peak 4(3p14.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 4(3P14.3) CNV | 33 | 72 | 91 |
| DEL PEAK 4(3P14.3) WILD-TYPE | 127 | 239 | 94 |
Figure S294. Get High-res Image Gene #33: 'Del Peak 4(3p14.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 2.7e-11 (Chi-square test), Q value = 1.5e-08
Table S295. Gene #34: 'Del Peak 5(4p16.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 5(4P16.3) CNV | 3 | 10 | 26 | 56 | 22 | 37 | 7 | 6 |
| DEL PEAK 5(4P16.3) WILD-TYPE | 18 | 26 | 93 | 40 | 87 | 35 | 13 | 34 |
Figure S295. Get High-res Image Gene #34: 'Del Peak 5(4p16.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 2.23e-11 (Fisher's exact test), Q value = 1.2e-08
Table S296. Gene #34: 'Del Peak 5(4p16.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 5(4P16.3) CNV | 22 | 72 | 73 |
| DEL PEAK 5(4P16.3) WILD-TYPE | 100 | 53 | 193 |
Figure S296. Get High-res Image Gene #34: 'Del Peak 5(4p16.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 3.94e-31 (Chi-square test), Q value = 3.1e-28
Table S297. Gene #34: 'Del Peak 5(4p16.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 5(4P16.3) CNV | 55 | 54 | 34 | 148 | 15 |
| DEL PEAK 5(4P16.3) WILD-TYPE | 319 | 178 | 45 | 104 | 33 |
Figure S297. Get High-res Image Gene #34: 'Del Peak 5(4p16.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 9.99e-13 (Chi-square test), Q value = 6e-10
Table S298. Gene #34: 'Del Peak 5(4p16.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 5(4P16.3) CNV | 65 | 32 | 33 | 29 | 5 | 31 |
| DEL PEAK 5(4P16.3) WILD-TYPE | 44 | 123 | 73 | 107 | 39 | 82 |
Figure S298. Get High-res Image Gene #34: 'Del Peak 5(4p16.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 4.6e-07 (Fisher's exact test), Q value = 0.00018
Table S299. Gene #34: 'Del Peak 5(4p16.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| DEL PEAK 5(4P16.3) CNV | 75 | 39 | 24 |
| DEL PEAK 5(4P16.3) WILD-TYPE | 72 | 94 | 93 |
Figure S299. Get High-res Image Gene #34: 'Del Peak 5(4p16.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 1.62e-06 (Fisher's exact test), Q value = 0.00059
Table S300. Gene #34: 'Del Peak 5(4p16.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| DEL PEAK 5(4P16.3) CNV | 48 | 24 | 66 |
| DEL PEAK 5(4P16.3) WILD-TYPE | 113 | 86 | 60 |
Figure S300. Get High-res Image Gene #34: 'Del Peak 5(4p16.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 2.63e-23 (Chi-square test), Q value = 2e-20
Table S301. Gene #34: 'Del Peak 5(4p16.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 5(4P16.3) CNV | 102 | 19 | 49 | 67 | 47 | 7 | 8 |
| DEL PEAK 5(4P16.3) WILD-TYPE | 73 | 120 | 168 | 87 | 177 | 40 | 7 |
Figure S301. Get High-res Image Gene #34: 'Del Peak 5(4p16.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 4.16e-23 (Fisher's exact test), Q value = 3.1e-20
Table S302. Gene #34: 'Del Peak 5(4p16.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 5(4P16.3) CNV | 48 | 138 | 113 |
| DEL PEAK 5(4P16.3) WILD-TYPE | 243 | 108 | 321 |
Figure S302. Get High-res Image Gene #34: 'Del Peak 5(4p16.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.56e-18 (Fisher's exact test), Q value = 1.1e-15
Table S303. Gene #34: 'Del Peak 5(4p16.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 5(4P16.3) CNV | 42 | 114 | 140 |
| DEL PEAK 5(4P16.3) WILD-TYPE | 232 | 299 | 139 |
Figure S303. Get High-res Image Gene #34: 'Del Peak 5(4p16.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.96e-18 (Fisher's exact test), Q value = 1.3e-15
Table S304. Gene #34: 'Del Peak 5(4p16.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 5(4P16.3) CNV | 121 | 69 | 106 |
| DEL PEAK 5(4P16.3) WILD-TYPE | 104 | 307 | 259 |
Figure S304. Get High-res Image Gene #34: 'Del Peak 5(4p16.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 3.36e-15 (Fisher's exact test), Q value = 2.1e-12
Table S305. Gene #34: 'Del Peak 5(4p16.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 5(4P16.3) CNV | 64 | 34 | 103 |
| DEL PEAK 5(4P16.3) WILD-TYPE | 186 | 176 | 93 |
Figure S305. Get High-res Image Gene #34: 'Del Peak 5(4p16.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 5.39e-15 (Fisher's exact test), Q value = 3.4e-12
Table S306. Gene #34: 'Del Peak 5(4p16.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 5(4P16.3) CNV | 28 | 73 | 100 |
| DEL PEAK 5(4P16.3) WILD-TYPE | 132 | 238 | 85 |
Figure S306. Get High-res Image Gene #34: 'Del Peak 5(4p16.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.17e-06 (Chi-square test), Q value = 0.00044
Table S307. Gene #35: 'Del Peak 6(4q35.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 6(4Q35.2) CNV | 7 | 10 | 25 | 51 | 23 | 30 | 10 | 9 |
| DEL PEAK 6(4Q35.2) WILD-TYPE | 14 | 26 | 94 | 45 | 86 | 42 | 10 | 31 |
Figure S307. Get High-res Image Gene #35: 'Del Peak 6(4q35.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 1.24e-06 (Fisher's exact test), Q value = 0.00046
Table S308. Gene #35: 'Del Peak 6(4q35.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 6(4Q35.2) CNV | 25 | 63 | 77 |
| DEL PEAK 6(4Q35.2) WILD-TYPE | 97 | 62 | 189 |
Figure S308. Get High-res Image Gene #35: 'Del Peak 6(4q35.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 4.27e-40 (Chi-square test), Q value = 3.5e-37
Table S309. Gene #35: 'Del Peak 6(4q35.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 6(4Q35.2) CNV | 54 | 47 | 39 | 158 | 12 |
| DEL PEAK 6(4Q35.2) WILD-TYPE | 320 | 185 | 40 | 94 | 36 |
Figure S309. Get High-res Image Gene #35: 'Del Peak 6(4q35.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 6.31e-14 (Chi-square test), Q value = 3.9e-11
Table S310. Gene #35: 'Del Peak 6(4q35.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 6(4Q35.2) CNV | 68 | 31 | 29 | 28 | 8 | 34 |
| DEL PEAK 6(4Q35.2) WILD-TYPE | 41 | 124 | 77 | 108 | 36 | 79 |
Figure S310. Get High-res Image Gene #35: 'Del Peak 6(4q35.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.51e-08 (Fisher's exact test), Q value = 6.9e-06
Table S311. Gene #35: 'Del Peak 6(4q35.2)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| DEL PEAK 6(4Q35.2) CNV | 78 | 35 | 24 |
| DEL PEAK 6(4Q35.2) WILD-TYPE | 69 | 98 | 93 |
Figure S311. Get High-res Image Gene #35: 'Del Peak 6(4q35.2)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 1.78e-06 (Fisher's exact test), Q value = 0.00064
Table S312. Gene #35: 'Del Peak 6(4q35.2)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| DEL PEAK 6(4Q35.2) CNV | 46 | 25 | 66 |
| DEL PEAK 6(4Q35.2) WILD-TYPE | 115 | 85 | 60 |
Figure S312. Get High-res Image Gene #35: 'Del Peak 6(4q35.2)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 3.21e-23 (Chi-square test), Q value = 2.4e-20
Table S313. Gene #35: 'Del Peak 6(4q35.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 6(4Q35.2) CNV | 105 | 20 | 52 | 64 | 46 | 8 | 8 |
| DEL PEAK 6(4Q35.2) WILD-TYPE | 70 | 119 | 165 | 90 | 178 | 39 | 7 |
Figure S313. Get High-res Image Gene #35: 'Del Peak 6(4q35.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 6.74e-19 (Fisher's exact test), Q value = 4.7e-16
Table S314. Gene #35: 'Del Peak 6(4q35.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 6(4Q35.2) CNV | 51 | 132 | 120 |
| DEL PEAK 6(4Q35.2) WILD-TYPE | 240 | 114 | 314 |
Figure S314. Get High-res Image Gene #35: 'Del Peak 6(4q35.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 5.94e-19 (Fisher's exact test), Q value = 4.1e-16
Table S315. Gene #35: 'Del Peak 6(4q35.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 6(4Q35.2) CNV | 45 | 109 | 143 |
| DEL PEAK 6(4Q35.2) WILD-TYPE | 229 | 304 | 136 |
Figure S315. Get High-res Image Gene #35: 'Del Peak 6(4q35.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.19e-19 (Fisher's exact test), Q value = 8.5e-17
Table S316. Gene #35: 'Del Peak 6(4q35.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 6(4Q35.2) CNV | 125 | 72 | 100 |
| DEL PEAK 6(4Q35.2) WILD-TYPE | 100 | 304 | 265 |
Figure S316. Get High-res Image Gene #35: 'Del Peak 6(4q35.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 4.2e-15 (Fisher's exact test), Q value = 2.7e-12
Table S317. Gene #35: 'Del Peak 6(4q35.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 6(4Q35.2) CNV | 62 | 35 | 103 |
| DEL PEAK 6(4Q35.2) WILD-TYPE | 188 | 175 | 93 |
Figure S317. Get High-res Image Gene #35: 'Del Peak 6(4q35.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 2e-13 (Fisher's exact test), Q value = 1.2e-10
Table S318. Gene #35: 'Del Peak 6(4q35.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 6(4Q35.2) CNV | 28 | 75 | 97 |
| DEL PEAK 6(4Q35.2) WILD-TYPE | 132 | 236 | 88 |
Figure S318. Get High-res Image Gene #35: 'Del Peak 6(4q35.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 2.5e-27 (Chi-square test), Q value = 1.9e-24
Table S319. Gene #36: 'Del Peak 7(5q11.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 7(5Q11.2) CNV | 3 | 5 | 19 | 68 | 7 | 25 | 3 | 4 |
| DEL PEAK 7(5Q11.2) WILD-TYPE | 18 | 31 | 100 | 28 | 102 | 47 | 17 | 36 |
Figure S319. Get High-res Image Gene #36: 'Del Peak 7(5q11.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 6.92e-25 (Fisher's exact test), Q value = 5.3e-22
Table S320. Gene #36: 'Del Peak 7(5q11.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 7(5Q11.2) CNV | 12 | 79 | 43 |
| DEL PEAK 7(5Q11.2) WILD-TYPE | 110 | 46 | 223 |
Figure S320. Get High-res Image Gene #36: 'Del Peak 7(5q11.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 3.86e-75 (Chi-square test), Q value = 3.2e-72
Table S321. Gene #36: 'Del Peak 7(5q11.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 7(5Q11.2) CNV | 26 | 34 | 8 | 177 | 11 |
| DEL PEAK 7(5Q11.2) WILD-TYPE | 348 | 198 | 71 | 75 | 37 |
Figure S321. Get High-res Image Gene #36: 'Del Peak 7(5q11.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 4.36e-44 (Chi-square test), Q value = 3.6e-41
Table S322. Gene #36: 'Del Peak 7(5q11.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 7(5Q11.2) CNV | 86 | 4 | 18 | 30 | 6 | 27 |
| DEL PEAK 7(5Q11.2) WILD-TYPE | 23 | 151 | 88 | 106 | 38 | 86 |
Figure S322. Get High-res Image Gene #36: 'Del Peak 7(5q11.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 3.33e-16 (Fisher's exact test), Q value = 2.2e-13
Table S323. Gene #36: 'Del Peak 7(5q11.2)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| DEL PEAK 7(5Q11.2) CNV | 78 | 13 | 23 |
| DEL PEAK 7(5Q11.2) WILD-TYPE | 69 | 120 | 94 |
Figure S323. Get High-res Image Gene #36: 'Del Peak 7(5q11.2)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 7.43e-19 (Fisher's exact test), Q value = 5.2e-16
Table S324. Gene #36: 'Del Peak 7(5q11.2)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| DEL PEAK 7(5Q11.2) CNV | 26 | 13 | 75 |
| DEL PEAK 7(5Q11.2) WILD-TYPE | 135 | 97 | 51 |
Figure S324. Get High-res Image Gene #36: 'Del Peak 7(5q11.2)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 7.27e-58 (Chi-square test), Q value = 6.1e-55
Table S325. Gene #36: 'Del Peak 7(5q11.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 7(5Q11.2) CNV | 127 | 7 | 16 | 51 | 44 | 5 | 4 |
| DEL PEAK 7(5Q11.2) WILD-TYPE | 48 | 132 | 201 | 103 | 180 | 42 | 11 |
Figure S325. Get High-res Image Gene #36: 'Del Peak 7(5q11.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 6.03e-54 (Fisher's exact test), Q value = 5e-51
Table S326. Gene #36: 'Del Peak 7(5q11.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 7(5Q11.2) CNV | 21 | 158 | 75 |
| DEL PEAK 7(5Q11.2) WILD-TYPE | 270 | 88 | 359 |
Figure S326. Get High-res Image Gene #36: 'Del Peak 7(5q11.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.55e-50 (Fisher's exact test), Q value = 1.3e-47
Table S327. Gene #36: 'Del Peak 7(5q11.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 7(5Q11.2) CNV | 17 | 64 | 163 |
| DEL PEAK 7(5Q11.2) WILD-TYPE | 257 | 349 | 116 |
Figure S327. Get High-res Image Gene #36: 'Del Peak 7(5q11.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3.59e-55 (Fisher's exact test), Q value = 3e-52
Table S328. Gene #36: 'Del Peak 7(5q11.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 7(5Q11.2) CNV | 148 | 29 | 67 |
| DEL PEAK 7(5Q11.2) WILD-TYPE | 77 | 347 | 298 |
Figure S328. Get High-res Image Gene #36: 'Del Peak 7(5q11.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 3.49e-35 (Fisher's exact test), Q value = 2.8e-32
Table S329. Gene #36: 'Del Peak 7(5q11.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 7(5Q11.2) CNV | 41 | 14 | 115 |
| DEL PEAK 7(5Q11.2) WILD-TYPE | 209 | 196 | 81 |
Figure S329. Get High-res Image Gene #36: 'Del Peak 7(5q11.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 3.08e-36 (Fisher's exact test), Q value = 2.5e-33
Table S330. Gene #36: 'Del Peak 7(5q11.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 7(5Q11.2) CNV | 14 | 42 | 114 |
| DEL PEAK 7(5Q11.2) WILD-TYPE | 146 | 269 | 71 |
Figure S330. Get High-res Image Gene #36: 'Del Peak 7(5q11.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 3.82e-29 (Chi-square test), Q value = 3e-26
Table S331. Gene #37: 'Del Peak 8(5q21.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 8(5Q21.3) CNV | 2 | 5 | 19 | 69 | 7 | 24 | 5 | 2 |
| DEL PEAK 8(5Q21.3) WILD-TYPE | 19 | 31 | 100 | 27 | 102 | 48 | 15 | 38 |
Figure S331. Get High-res Image Gene #37: 'Del Peak 8(5q21.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 2.12e-26 (Fisher's exact test), Q value = 1.6e-23
Table S332. Gene #37: 'Del Peak 8(5q21.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 8(5Q21.3) CNV | 11 | 80 | 42 |
| DEL PEAK 8(5Q21.3) WILD-TYPE | 111 | 45 | 224 |
Figure S332. Get High-res Image Gene #37: 'Del Peak 8(5q21.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1.48e-87 (Chi-square test), Q value = 1.2e-84
Table S333. Gene #37: 'Del Peak 8(5q21.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 8(5Q21.3) CNV | 20 | 27 | 7 | 182 | 10 |
| DEL PEAK 8(5Q21.3) WILD-TYPE | 354 | 205 | 72 | 70 | 38 |
Figure S333. Get High-res Image Gene #37: 'Del Peak 8(5q21.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 8.44e-53 (Chi-square test), Q value = 7e-50
Table S334. Gene #37: 'Del Peak 8(5q21.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 8(5Q21.3) CNV | 90 | 4 | 14 | 26 | 4 | 25 |
| DEL PEAK 8(5Q21.3) WILD-TYPE | 19 | 151 | 92 | 110 | 40 | 88 |
Figure S334. Get High-res Image Gene #37: 'Del Peak 8(5q21.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2.6e-15 (Fisher's exact test), Q value = 1.7e-12
Table S335. Gene #37: 'Del Peak 8(5q21.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| DEL PEAK 8(5Q21.3) CNV | 76 | 13 | 23 |
| DEL PEAK 8(5Q21.3) WILD-TYPE | 71 | 120 | 94 |
Figure S335. Get High-res Image Gene #37: 'Del Peak 8(5q21.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 8.97e-16 (Fisher's exact test), Q value = 5.8e-13
Table S336. Gene #37: 'Del Peak 8(5q21.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| DEL PEAK 8(5Q21.3) CNV | 26 | 15 | 71 |
| DEL PEAK 8(5Q21.3) WILD-TYPE | 135 | 95 | 55 |
Figure S336. Get High-res Image Gene #37: 'Del Peak 8(5q21.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 2.08e-66 (Chi-square test), Q value = 1.7e-63
Table S337. Gene #37: 'Del Peak 8(5q21.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 8(5Q21.3) CNV | 130 | 7 | 12 | 47 | 36 | 4 | 6 |
| DEL PEAK 8(5Q21.3) WILD-TYPE | 45 | 132 | 205 | 107 | 188 | 43 | 9 |
Figure S337. Get High-res Image Gene #37: 'Del Peak 8(5q21.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.21e-58 (Fisher's exact test), Q value = 1e-55
Table S338. Gene #37: 'Del Peak 8(5q21.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 8(5Q21.3) CNV | 17 | 158 | 67 |
| DEL PEAK 8(5Q21.3) WILD-TYPE | 274 | 88 | 367 |
Figure S338. Get High-res Image Gene #37: 'Del Peak 8(5q21.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 4.12e-56 (Fisher's exact test), Q value = 3.4e-53
Table S339. Gene #37: 'Del Peak 8(5q21.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 8(5Q21.3) CNV | 12 | 60 | 164 |
| DEL PEAK 8(5Q21.3) WILD-TYPE | 262 | 353 | 115 |
Figure S339. Get High-res Image Gene #37: 'Del Peak 8(5q21.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.13e-63 (Fisher's exact test), Q value = 1.8e-60
Table S340. Gene #37: 'Del Peak 8(5q21.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 8(5Q21.3) CNV | 152 | 23 | 61 |
| DEL PEAK 8(5Q21.3) WILD-TYPE | 73 | 353 | 304 |
Figure S340. Get High-res Image Gene #37: 'Del Peak 8(5q21.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.16e-39 (Fisher's exact test), Q value = 9.5e-37
Table S341. Gene #37: 'Del Peak 8(5q21.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 8(5Q21.3) CNV | 31 | 12 | 115 |
| DEL PEAK 8(5Q21.3) WILD-TYPE | 219 | 198 | 81 |
Figure S341. Get High-res Image Gene #37: 'Del Peak 8(5q21.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 5.97e-44 (Fisher's exact test), Q value = 4.9e-41
Table S342. Gene #37: 'Del Peak 8(5q21.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 8(5Q21.3) CNV | 10 | 32 | 116 |
| DEL PEAK 8(5Q21.3) WILD-TYPE | 150 | 279 | 69 |
Figure S342. Get High-res Image Gene #37: 'Del Peak 8(5q21.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 3.08e-08 (Chi-square test), Q value = 1.4e-05
Table S343. Gene #38: 'Del Peak 9(6p25.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 9(6P25.3) CNV | 36 | 69 | 15 | 55 | 11 |
| DEL PEAK 9(6P25.3) WILD-TYPE | 338 | 163 | 64 | 197 | 37 |
Figure S343. Get High-res Image Gene #38: 'Del Peak 9(6p25.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.000166 (Chi-square test), Q value = 0.042
Table S344. Gene #38: 'Del Peak 9(6p25.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 9(6P25.3) CNV | 26 | 16 | 21 | 41 | 5 | 15 |
| DEL PEAK 9(6P25.3) WILD-TYPE | 83 | 139 | 85 | 95 | 39 | 98 |
Figure S344. Get High-res Image Gene #38: 'Del Peak 9(6p25.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.000615 (Chi-square test), Q value = 0.14
Table S345. Gene #38: 'Del Peak 9(6p25.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 9(6P25.3) CNV | 40 | 14 | 36 | 24 | 61 | 6 | 1 |
| DEL PEAK 9(6P25.3) WILD-TYPE | 135 | 125 | 181 | 130 | 163 | 41 | 14 |
Figure S345. Get High-res Image Gene #38: 'Del Peak 9(6p25.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2.42e-06 (Chi-square test), Q value = 0.00086
Table S346. Gene #39: 'Del Peak 10(6q15)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 10(6Q15) CNV | 6 | 13 | 62 | 18 | 24 | 29 | 4 | 16 |
| DEL PEAK 10(6Q15) WILD-TYPE | 15 | 23 | 57 | 78 | 85 | 43 | 16 | 24 |
Figure S346. Get High-res Image Gene #39: 'Del Peak 10(6q15)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 4.52e-35 (Chi-square test), Q value = 3.6e-32
Table S347. Gene #39: 'Del Peak 10(6q15)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 10(6Q15) CNV | 76 | 143 | 22 | 43 | 31 |
| DEL PEAK 10(6Q15) WILD-TYPE | 298 | 89 | 57 | 209 | 17 |
Figure S347. Get High-res Image Gene #39: 'Del Peak 10(6q15)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3.06e-09 (Chi-square test), Q value = 1.5e-06
Table S348. Gene #39: 'Del Peak 10(6q15)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 10(6Q15) CNV | 19 | 47 | 39 | 69 | 6 | 23 |
| DEL PEAK 10(6Q15) WILD-TYPE | 90 | 108 | 67 | 67 | 38 | 90 |
Figure S348. Get High-res Image Gene #39: 'Del Peak 10(6q15)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 3.2e-11 (Chi-square test), Q value = 1.7e-08
Table S349. Gene #39: 'Del Peak 10(6q15)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 10(6Q15) CNV | 29 | 38 | 62 | 53 | 114 | 12 | 3 |
| DEL PEAK 10(6Q15) WILD-TYPE | 146 | 101 | 155 | 101 | 110 | 35 | 12 |
Figure S349. Get High-res Image Gene #39: 'Del Peak 10(6q15)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 4.15e-05 (Fisher's exact test), Q value = 0.012
Table S350. Gene #39: 'Del Peak 10(6q15)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 10(6Q15) CNV | 86 | 56 | 169 |
| DEL PEAK 10(6Q15) WILD-TYPE | 205 | 190 | 265 |
Figure S350. Get High-res Image Gene #39: 'Del Peak 10(6q15)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 3.16e-06 (Fisher's exact test), Q value = 0.0011
Table S351. Gene #39: 'Del Peak 10(6q15)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 10(6Q15) CNV | 49 | 113 | 150 |
| DEL PEAK 10(6Q15) WILD-TYPE | 176 | 263 | 215 |
Figure S351. Get High-res Image Gene #39: 'Del Peak 10(6q15)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 9.1e-16 (Chi-square test), Q value = 5.9e-13
Table S352. Gene #40: 'Del Peak 11(6q27)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 11(6Q27) CNV | 84 | 120 | 19 | 79 | 30 |
| DEL PEAK 11(6Q27) WILD-TYPE | 290 | 112 | 60 | 173 | 18 |
Figure S352. Get High-res Image Gene #40: 'Del Peak 11(6q27)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00108 (Chi-square test), Q value = 0.24
Table S353. Gene #40: 'Del Peak 11(6q27)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 11(6Q27) CNV | 58 | 43 | 54 | 56 | 100 | 12 | 4 |
| DEL PEAK 11(6Q27) WILD-TYPE | 117 | 96 | 163 | 98 | 124 | 35 | 11 |
Figure S353. Get High-res Image Gene #40: 'Del Peak 11(6q27)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00104 (Chi-square test), Q value = 0.23
Table S354. Gene #41: 'Del Peak 12(7p22.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 12(7P22.3) CNV | 4 | 3 | 25 | 22 | 3 | 12 | 2 | 4 |
| DEL PEAK 12(7P22.3) WILD-TYPE | 17 | 33 | 94 | 74 | 106 | 60 | 18 | 36 |
Figure S354. Get High-res Image Gene #41: 'Del Peak 12(7p22.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 7.95e-05 (Fisher's exact test), Q value = 0.022
Table S355. Gene #41: 'Del Peak 12(7p22.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 12(7P22.3) CNV | 5 | 27 | 43 |
| DEL PEAK 12(7P22.3) WILD-TYPE | 117 | 98 | 223 |
Figure S355. Get High-res Image Gene #41: 'Del Peak 12(7p22.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1.52e-15 (Chi-square test), Q value = 9.8e-13
Table S356. Gene #41: 'Del Peak 12(7p22.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 12(7P22.3) CNV | 11 | 46 | 5 | 60 | 3 |
| DEL PEAK 12(7P22.3) WILD-TYPE | 363 | 186 | 74 | 192 | 45 |
Figure S356. Get High-res Image Gene #41: 'Del Peak 12(7p22.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.63e-08 (Chi-square test), Q value = 7.4e-06
Table S357. Gene #41: 'Del Peak 12(7p22.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 12(7P22.3) CNV | 28 | 7 | 15 | 16 | 1 | 3 |
| DEL PEAK 12(7P22.3) WILD-TYPE | 81 | 148 | 91 | 120 | 43 | 110 |
Figure S357. Get High-res Image Gene #41: 'Del Peak 12(7p22.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 3.96e-10 (Chi-square test), Q value = 2e-07
Table S358. Gene #41: 'Del Peak 12(7p22.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 12(7P22.3) CNV | 45 | 7 | 10 | 25 | 35 | 1 | 1 |
| DEL PEAK 12(7P22.3) WILD-TYPE | 130 | 132 | 207 | 129 | 189 | 46 | 14 |
Figure S358. Get High-res Image Gene #41: 'Del Peak 12(7p22.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 5.97e-10 (Fisher's exact test), Q value = 3e-07
Table S359. Gene #41: 'Del Peak 12(7p22.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 12(7P22.3) CNV | 12 | 55 | 57 |
| DEL PEAK 12(7P22.3) WILD-TYPE | 279 | 191 | 377 |
Figure S359. Get High-res Image Gene #41: 'Del Peak 12(7p22.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.24e-12 (Fisher's exact test), Q value = 7.3e-10
Table S360. Gene #41: 'Del Peak 12(7p22.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 12(7P22.3) CNV | 7 | 53 | 62 |
| DEL PEAK 12(7P22.3) WILD-TYPE | 267 | 360 | 217 |
Figure S360. Get High-res Image Gene #41: 'Del Peak 12(7p22.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.1e-12 (Fisher's exact test), Q value = 6.5e-10
Table S361. Gene #41: 'Del Peak 12(7p22.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 12(7P22.3) CNV | 53 | 15 | 54 |
| DEL PEAK 12(7P22.3) WILD-TYPE | 172 | 361 | 311 |
Figure S361. Get High-res Image Gene #41: 'Del Peak 12(7p22.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 3.51e-09 (Fisher's exact test), Q value = 1.7e-06
Table S362. Gene #41: 'Del Peak 12(7p22.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 12(7P22.3) CNV | 23 | 5 | 41 |
| DEL PEAK 12(7P22.3) WILD-TYPE | 227 | 205 | 155 |
Figure S362. Get High-res Image Gene #41: 'Del Peak 12(7p22.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 5.25e-06 (Fisher's exact test), Q value = 0.0018
Table S363. Gene #41: 'Del Peak 12(7p22.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 12(7P22.3) CNV | 7 | 25 | 37 |
| DEL PEAK 12(7P22.3) WILD-TYPE | 153 | 286 | 148 |
Figure S363. Get High-res Image Gene #41: 'Del Peak 12(7p22.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 5.11e-11 (Chi-square test), Q value = 2.7e-08
Table S364. Gene #42: 'Del Peak 13(7q36.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 13(7Q36.1) CNV | 32 | 61 | 13 | 73 | 5 |
| DEL PEAK 13(7Q36.1) WILD-TYPE | 342 | 171 | 66 | 179 | 43 |
Figure S364. Get High-res Image Gene #42: 'Del Peak 13(7q36.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.92e-05 (Chi-square test), Q value = 0.0087
Table S365. Gene #42: 'Del Peak 13(7q36.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 13(7Q36.1) CNV | 42 | 15 | 29 | 47 | 42 | 5 | 1 |
| DEL PEAK 13(7Q36.1) WILD-TYPE | 133 | 124 | 188 | 107 | 182 | 42 | 14 |
Figure S365. Get High-res Image Gene #42: 'Del Peak 13(7q36.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00023 (Fisher's exact test), Q value = 0.057
Table S366. Gene #42: 'Del Peak 13(7q36.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 13(7Q36.1) CNV | 33 | 59 | 89 |
| DEL PEAK 13(7Q36.1) WILD-TYPE | 258 | 187 | 345 |
Figure S366. Get High-res Image Gene #42: 'Del Peak 13(7q36.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.39e-08 (Fisher's exact test), Q value = 6.4e-06
Table S367. Gene #42: 'Del Peak 13(7q36.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 13(7Q36.1) CNV | 22 | 82 | 75 |
| DEL PEAK 13(7Q36.1) WILD-TYPE | 252 | 331 | 204 |
Figure S367. Get High-res Image Gene #42: 'Del Peak 13(7q36.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.33e-07 (Fisher's exact test), Q value = 5.6e-05
Table S368. Gene #42: 'Del Peak 13(7q36.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 13(7Q36.1) CNV | 58 | 38 | 83 |
| DEL PEAK 13(7Q36.1) WILD-TYPE | 167 | 338 | 282 |
Figure S368. Get High-res Image Gene #42: 'Del Peak 13(7q36.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 9.61e-07 (Fisher's exact test), Q value = 0.00036
Table S369. Gene #42: 'Del Peak 13(7q36.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 13(7Q36.1) CNV | 49 | 16 | 52 |
| DEL PEAK 13(7Q36.1) WILD-TYPE | 201 | 194 | 144 |
Figure S369. Get High-res Image Gene #42: 'Del Peak 13(7q36.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 2.43e-06 (Fisher's exact test), Q value = 0.00086
Table S370. Gene #42: 'Del Peak 13(7q36.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 13(7Q36.1) CNV | 12 | 53 | 52 |
| DEL PEAK 13(7Q36.1) WILD-TYPE | 148 | 258 | 133 |
Figure S370. Get High-res Image Gene #42: 'Del Peak 13(7q36.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.61e-09 (Chi-square test), Q value = 7.9e-07
Table S371. Gene #43: 'Del Peak 14(8p23.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 14(8P23.2) CNV | 12 | 15 | 78 | 65 | 29 | 47 | 13 | 18 |
| DEL PEAK 14(8P23.2) WILD-TYPE | 9 | 21 | 41 | 31 | 80 | 25 | 7 | 22 |
Figure S371. Get High-res Image Gene #43: 'Del Peak 14(8p23.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 9.89e-06 (Fisher's exact test), Q value = 0.0032
Table S372. Gene #43: 'Del Peak 14(8p23.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 14(8P23.2) CNV | 47 | 86 | 144 |
| DEL PEAK 14(8P23.2) WILD-TYPE | 75 | 39 | 122 |
Figure S372. Get High-res Image Gene #43: 'Del Peak 14(8p23.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1.02e-33 (Chi-square test), Q value = 8.2e-31
Table S373. Gene #43: 'Del Peak 14(8p23.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 14(8P23.2) CNV | 118 | 156 | 20 | 178 | 40 |
| DEL PEAK 14(8P23.2) WILD-TYPE | 256 | 76 | 59 | 74 | 8 |
Figure S373. Get High-res Image Gene #43: 'Del Peak 14(8p23.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.07e-13 (Chi-square test), Q value = 1.3e-10
Table S374. Gene #43: 'Del Peak 14(8p23.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 14(8P23.2) CNV | 72 | 42 | 55 | 94 | 16 | 50 |
| DEL PEAK 14(8P23.2) WILD-TYPE | 37 | 113 | 51 | 42 | 28 | 63 |
Figure S374. Get High-res Image Gene #43: 'Del Peak 14(8p23.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.9e-19 (Chi-square test), Q value = 1.3e-16
Table S375. Gene #43: 'Del Peak 14(8p23.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 14(8P23.2) CNV | 109 | 51 | 68 | 108 | 141 | 17 | 13 |
| DEL PEAK 14(8P23.2) WILD-TYPE | 66 | 88 | 149 | 46 | 83 | 30 | 2 |
Figure S375. Get High-res Image Gene #43: 'Del Peak 14(8p23.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2.61e-12 (Fisher's exact test), Q value = 1.5e-09
Table S376. Gene #43: 'Del Peak 14(8p23.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 14(8P23.2) CNV | 104 | 163 | 240 |
| DEL PEAK 14(8P23.2) WILD-TYPE | 187 | 83 | 194 |
Figure S376. Get High-res Image Gene #43: 'Del Peak 14(8p23.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.11e-12 (Fisher's exact test), Q value = 6.6e-10
Table S377. Gene #43: 'Del Peak 14(8p23.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 14(8P23.2) CNV | 97 | 217 | 186 |
| DEL PEAK 14(8P23.2) WILD-TYPE | 177 | 196 | 93 |
Figure S377. Get High-res Image Gene #43: 'Del Peak 14(8p23.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.37e-15 (Fisher's exact test), Q value = 8.9e-13
Table S378. Gene #43: 'Del Peak 14(8p23.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 14(8P23.2) CNV | 155 | 136 | 209 |
| DEL PEAK 14(8P23.2) WILD-TYPE | 70 | 240 | 156 |
Figure S378. Get High-res Image Gene #43: 'Del Peak 14(8p23.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 3.98e-08 (Fisher's exact test), Q value = 1.8e-05
Table S379. Gene #43: 'Del Peak 14(8p23.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 14(8P23.2) CNV | 124 | 79 | 130 |
| DEL PEAK 14(8P23.2) WILD-TYPE | 126 | 131 | 66 |
Figure S379. Get High-res Image Gene #43: 'Del Peak 14(8p23.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 2.97e-07 (Fisher's exact test), Q value = 0.00012
Table S380. Gene #43: 'Del Peak 14(8p23.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 14(8P23.2) CNV | 67 | 141 | 125 |
| DEL PEAK 14(8P23.2) WILD-TYPE | 93 | 170 | 60 |
Figure S380. Get High-res Image Gene #43: 'Del Peak 14(8p23.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.000194 (Chi-square test), Q value = 0.049
Table S381. Gene #44: 'Del Peak 15(8p11.21)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 15(8P11.21) CNV | 4 | 4 | 23 | 21 | 9 | 27 | 7 | 7 |
| DEL PEAK 15(8P11.21) WILD-TYPE | 17 | 32 | 96 | 75 | 100 | 45 | 13 | 33 |
Figure S381. Get High-res Image Gene #44: 'Del Peak 15(8p11.21)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 1.19e-12 (Chi-square test), Q value = 7e-10
Table S382. Gene #44: 'Del Peak 15(8p11.21)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 15(8P11.21) CNV | 44 | 53 | 8 | 83 | 0 |
| DEL PEAK 15(8P11.21) WILD-TYPE | 330 | 179 | 71 | 169 | 48 |
Figure S382. Get High-res Image Gene #44: 'Del Peak 15(8p11.21)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.79e-12 (Chi-square test), Q value = 1e-09
Table S383. Gene #44: 'Del Peak 15(8p11.21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 15(8P11.21) CNV | 35 | 19 | 23 | 63 | 34 | 7 | 6 |
| DEL PEAK 15(8P11.21) WILD-TYPE | 140 | 120 | 194 | 91 | 190 | 40 | 9 |
Figure S383. Get High-res Image Gene #44: 'Del Peak 15(8p11.21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 4.61e-05 (Fisher's exact test), Q value = 0.013
Table S384. Gene #44: 'Del Peak 15(8p11.21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 15(8P11.21) CNV | 36 | 68 | 83 |
| DEL PEAK 15(8P11.21) WILD-TYPE | 255 | 178 | 351 |
Figure S384. Get High-res Image Gene #44: 'Del Peak 15(8p11.21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 9.37e-07 (Fisher's exact test), Q value = 0.00036
Table S385. Gene #44: 'Del Peak 15(8p11.21)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 15(8P11.21) CNV | 26 | 88 | 72 |
| DEL PEAK 15(8P11.21) WILD-TYPE | 248 | 325 | 207 |
Figure S385. Get High-res Image Gene #44: 'Del Peak 15(8p11.21)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.74e-07 (Fisher's exact test), Q value = 7.3e-05
Table S386. Gene #44: 'Del Peak 15(8p11.21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 15(8P11.21) CNV | 62 | 41 | 83 |
| DEL PEAK 15(8P11.21) WILD-TYPE | 163 | 335 | 282 |
Figure S386. Get High-res Image Gene #44: 'Del Peak 15(8p11.21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.32e-06 (Fisher's exact test), Q value = 0.00049
Table S387. Gene #44: 'Del Peak 15(8p11.21)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 15(8P11.21) CNV | 57 | 19 | 55 |
| DEL PEAK 15(8P11.21) WILD-TYPE | 193 | 191 | 141 |
Figure S387. Get High-res Image Gene #44: 'Del Peak 15(8p11.21)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 4.15e-05 (Fisher's exact test), Q value = 0.012
Table S388. Gene #44: 'Del Peak 15(8p11.21)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 15(8P11.21) CNV | 18 | 57 | 56 |
| DEL PEAK 15(8P11.21) WILD-TYPE | 142 | 254 | 129 |
Figure S388. Get High-res Image Gene #44: 'Del Peak 15(8p11.21)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 6.98e-08 (Chi-square test), Q value = 3e-05
Table S389. Gene #45: 'Del Peak 16(9p23)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 16(9P23) CNV | 9 | 15 | 56 | 19 | 21 | 34 | 10 | 5 |
| DEL PEAK 16(9P23) WILD-TYPE | 12 | 21 | 63 | 77 | 88 | 38 | 10 | 35 |
Figure S389. Get High-res Image Gene #45: 'Del Peak 16(9p23)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 8.19e-06 (Fisher's exact test), Q value = 0.0027
Table S390. Gene #45: 'Del Peak 16(9p23)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 16(9P23) CNV | 25 | 31 | 113 |
| DEL PEAK 16(9P23) WILD-TYPE | 97 | 94 | 153 |
Figure S390. Get High-res Image Gene #45: 'Del Peak 16(9p23)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 6.67e-38 (Chi-square test), Q value = 5.4e-35
Table S391. Gene #45: 'Del Peak 16(9p23)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 16(9P23) CNV | 40 | 139 | 12 | 92 | 11 |
| DEL PEAK 16(9P23) WILD-TYPE | 334 | 93 | 67 | 160 | 37 |
Figure S391. Get High-res Image Gene #45: 'Del Peak 16(9p23)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.92e-19 (Chi-square test), Q value = 1.4e-16
Table S392. Gene #45: 'Del Peak 16(9p23)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 16(9P23) CNV | 25 | 17 | 46 | 74 | 7 | 16 |
| DEL PEAK 16(9P23) WILD-TYPE | 84 | 138 | 60 | 62 | 37 | 97 |
Figure S392. Get High-res Image Gene #45: 'Del Peak 16(9p23)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.72e-19 (Chi-square test), Q value = 1.2e-16
Table S393. Gene #45: 'Del Peak 16(9p23)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 16(9P23) CNV | 34 | 25 | 38 | 69 | 110 | 6 | 8 |
| DEL PEAK 16(9P23) WILD-TYPE | 141 | 114 | 179 | 85 | 114 | 41 | 7 |
Figure S393. Get High-res Image Gene #45: 'Del Peak 16(9p23)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.09e-08 (Fisher's exact test), Q value = 5e-06
Table S394. Gene #45: 'Del Peak 16(9p23)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 16(9P23) CNV | 52 | 71 | 167 |
| DEL PEAK 16(9P23) WILD-TYPE | 239 | 175 | 267 |
Figure S394. Get High-res Image Gene #45: 'Del Peak 16(9p23)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 6.56e-07 (Fisher's exact test), Q value = 0.00026
Table S395. Gene #45: 'Del Peak 16(9p23)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 16(9P23) CNV | 49 | 149 | 89 |
| DEL PEAK 16(9P23) WILD-TYPE | 225 | 264 | 190 |
Figure S395. Get High-res Image Gene #45: 'Del Peak 16(9p23)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.34e-12 (Fisher's exact test), Q value = 1.4e-09
Table S396. Gene #45: 'Del Peak 16(9p23)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 16(9P23) CNV | 66 | 67 | 154 |
| DEL PEAK 16(9P23) WILD-TYPE | 159 | 309 | 211 |
Figure S396. Get High-res Image Gene #45: 'Del Peak 16(9p23)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.000127 (Fisher's exact test), Q value = 0.033
Table S397. Gene #45: 'Del Peak 16(9p23)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 16(9P23) CNV | 79 | 36 | 66 |
| DEL PEAK 16(9P23) WILD-TYPE | 171 | 174 | 130 |
Figure S397. Get High-res Image Gene #45: 'Del Peak 16(9p23)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 2e-06 (Chi-square test), Q value = 0.00072
Table S398. Gene #46: 'Del Peak 17(9p21.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 17(9P21.3) CNV | 9 | 13 | 60 | 30 | 23 | 38 | 8 | 6 |
| DEL PEAK 17(9P21.3) WILD-TYPE | 12 | 23 | 59 | 66 | 86 | 34 | 12 | 34 |
Figure S398. Get High-res Image Gene #46: 'Del Peak 17(9p21.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 4.31e-05 (Fisher's exact test), Q value = 0.012
Table S399. Gene #46: 'Del Peak 17(9p21.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 17(9P21.3) CNV | 26 | 43 | 118 |
| DEL PEAK 17(9P21.3) WILD-TYPE | 96 | 82 | 148 |
Figure S399. Get High-res Image Gene #46: 'Del Peak 17(9p21.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 3.26e-38 (Chi-square test), Q value = 2.6e-35
Table S400. Gene #46: 'Del Peak 17(9p21.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 17(9P21.3) CNV | 45 | 142 | 15 | 113 | 12 |
| DEL PEAK 17(9P21.3) WILD-TYPE | 329 | 90 | 64 | 139 | 36 |
Figure S400. Get High-res Image Gene #46: 'Del Peak 17(9p21.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.01e-16 (Chi-square test), Q value = 6.7e-14
Table S401. Gene #46: 'Del Peak 17(9p21.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 17(9P21.3) CNV | 36 | 20 | 44 | 75 | 6 | 19 |
| DEL PEAK 17(9P21.3) WILD-TYPE | 73 | 135 | 62 | 61 | 38 | 94 |
Figure S401. Get High-res Image Gene #46: 'Del Peak 17(9p21.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.5e-16 (Chi-square test), Q value = 9.9e-14
Table S402. Gene #46: 'Del Peak 17(9p21.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 17(9P21.3) CNV | 54 | 26 | 42 | 73 | 113 | 6 | 7 |
| DEL PEAK 17(9P21.3) WILD-TYPE | 121 | 113 | 175 | 81 | 111 | 41 | 8 |
Figure S402. Get High-res Image Gene #46: 'Del Peak 17(9p21.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.74e-10 (Fisher's exact test), Q value = 9e-08
Table S403. Gene #46: 'Del Peak 17(9p21.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 17(9P21.3) CNV | 53 | 91 | 177 |
| DEL PEAK 17(9P21.3) WILD-TYPE | 238 | 155 | 257 |
Figure S403. Get High-res Image Gene #46: 'Del Peak 17(9p21.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.22e-10 (Fisher's exact test), Q value = 6.3e-08
Table S404. Gene #46: 'Del Peak 17(9p21.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 17(9P21.3) CNV | 47 | 161 | 109 |
| DEL PEAK 17(9P21.3) WILD-TYPE | 227 | 252 | 170 |
Figure S404. Get High-res Image Gene #46: 'Del Peak 17(9p21.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.47e-13 (Fisher's exact test), Q value = 1.5e-10
Table S405. Gene #46: 'Del Peak 17(9p21.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 17(9P21.3) CNV | 87 | 71 | 159 |
| DEL PEAK 17(9P21.3) WILD-TYPE | 138 | 305 | 206 |
Figure S405. Get High-res Image Gene #46: 'Del Peak 17(9p21.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.17e-05 (Fisher's exact test), Q value = 0.0037
Table S406. Gene #46: 'Del Peak 17(9p21.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 17(9P21.3) CNV | 82 | 39 | 77 |
| DEL PEAK 17(9P21.3) WILD-TYPE | 168 | 171 | 119 |
Figure S406. Get High-res Image Gene #46: 'Del Peak 17(9p21.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 8.14e-05 (Fisher's exact test), Q value = 0.022
Table S407. Gene #46: 'Del Peak 17(9p21.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 17(9P21.3) CNV | 30 | 94 | 74 |
| DEL PEAK 17(9P21.3) WILD-TYPE | 130 | 217 | 111 |
Figure S407. Get High-res Image Gene #46: 'Del Peak 17(9p21.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 2.17e-05 (Fisher's exact test), Q value = 0.0067
Table S408. Gene #47: 'Del Peak 18(9q21.11)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 18(9Q21.11) CNV | 17 | 47 | 88 |
| DEL PEAK 18(9Q21.11) WILD-TYPE | 105 | 78 | 178 |
Figure S408. Get High-res Image Gene #47: 'Del Peak 18(9q21.11)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 3.73e-22 (Chi-square test), Q value = 2.8e-19
Table S409. Gene #47: 'Del Peak 18(9q21.11)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 18(9Q21.11) CNV | 37 | 92 | 15 | 106 | 13 |
| DEL PEAK 18(9Q21.11) WILD-TYPE | 337 | 140 | 64 | 146 | 35 |
Figure S409. Get High-res Image Gene #47: 'Del Peak 18(9q21.11)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.3e-11 (Chi-square test), Q value = 7.2e-09
Table S410. Gene #47: 'Del Peak 18(9q21.11)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 18(9Q21.11) CNV | 44 | 14 | 24 | 55 | 5 | 21 |
| DEL PEAK 18(9Q21.11) WILD-TYPE | 65 | 141 | 82 | 81 | 39 | 92 |
Figure S410. Get High-res Image Gene #47: 'Del Peak 18(9q21.11)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.04e-05 (Fisher's exact test), Q value = 0.0034
Table S411. Gene #47: 'Del Peak 18(9q21.11)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| DEL PEAK 18(9Q21.11) CNV | 65 | 32 | 22 |
| DEL PEAK 18(9Q21.11) WILD-TYPE | 82 | 101 | 95 |
Figure S411. Get High-res Image Gene #47: 'Del Peak 18(9q21.11)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 5.21e-11 (Chi-square test), Q value = 2.8e-08
Table S412. Gene #47: 'Del Peak 18(9q21.11)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 18(9Q21.11) CNV | 66 | 16 | 36 | 48 | 83 | 6 | 7 |
| DEL PEAK 18(9Q21.11) WILD-TYPE | 109 | 123 | 181 | 106 | 141 | 41 | 8 |
Figure S412. Get High-res Image Gene #47: 'Del Peak 18(9q21.11)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 6.26e-09 (Fisher's exact test), Q value = 3e-06
Table S413. Gene #47: 'Del Peak 18(9q21.11)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 18(9Q21.11) CNV | 43 | 91 | 128 |
| DEL PEAK 18(9Q21.11) WILD-TYPE | 248 | 155 | 306 |
Figure S413. Get High-res Image Gene #47: 'Del Peak 18(9q21.11)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 4.95e-12 (Fisher's exact test), Q value = 2.8e-09
Table S414. Gene #47: 'Del Peak 18(9q21.11)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 18(9Q21.11) CNV | 36 | 109 | 111 |
| DEL PEAK 18(9Q21.11) WILD-TYPE | 238 | 304 | 168 |
Figure S414. Get High-res Image Gene #47: 'Del Peak 18(9q21.11)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 7.39e-15 (Fisher's exact test), Q value = 4.7e-12
Table S415. Gene #47: 'Del Peak 18(9q21.11)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 18(9Q21.11) CNV | 98 | 53 | 105 |
| DEL PEAK 18(9Q21.11) WILD-TYPE | 127 | 323 | 260 |
Figure S415. Get High-res Image Gene #47: 'Del Peak 18(9q21.11)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 5.32e-07 (Fisher's exact test), Q value = 0.00021
Table S416. Gene #47: 'Del Peak 18(9q21.11)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 18(9Q21.11) CNV | 54 | 33 | 75 |
| DEL PEAK 18(9Q21.11) WILD-TYPE | 196 | 177 | 121 |
Figure S416. Get High-res Image Gene #47: 'Del Peak 18(9q21.11)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 9.63e-07 (Fisher's exact test), Q value = 0.00036
Table S417. Gene #47: 'Del Peak 18(9q21.11)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 18(9Q21.11) CNV | 26 | 64 | 72 |
| DEL PEAK 18(9Q21.11) WILD-TYPE | 134 | 247 | 113 |
Figure S417. Get High-res Image Gene #47: 'Del Peak 18(9q21.11)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.35e-07 (Chi-square test), Q value = 5.7e-05
Table S418. Gene #48: 'Del Peak 19(9q34.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 19(9Q34.2) CNV | 6 | 5 | 38 | 52 | 23 | 17 | 7 | 4 |
| DEL PEAK 19(9Q34.2) WILD-TYPE | 15 | 31 | 81 | 44 | 86 | 55 | 13 | 36 |
Figure S418. Get High-res Image Gene #48: 'Del Peak 19(9q34.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 4.43e-08 (Fisher's exact test), Q value = 1.9e-05
Table S419. Gene #48: 'Del Peak 19(9q34.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 19(9Q34.2) CNV | 16 | 58 | 78 |
| DEL PEAK 19(9Q34.2) WILD-TYPE | 106 | 67 | 188 |
Figure S419. Get High-res Image Gene #48: 'Del Peak 19(9q34.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1.98e-35 (Chi-square test), Q value = 1.6e-32
Table S420. Gene #48: 'Del Peak 19(9q34.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 19(9Q34.2) CNV | 26 | 83 | 12 | 130 | 14 |
| DEL PEAK 19(9Q34.2) WILD-TYPE | 348 | 149 | 67 | 122 | 34 |
Figure S420. Get High-res Image Gene #48: 'Del Peak 19(9q34.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3.68e-22 (Chi-square test), Q value = 2.7e-19
Table S421. Gene #48: 'Del Peak 19(9q34.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 19(9Q34.2) CNV | 65 | 12 | 26 | 42 | 4 | 16 |
| DEL PEAK 19(9Q34.2) WILD-TYPE | 44 | 143 | 80 | 94 | 40 | 97 |
Figure S421. Get High-res Image Gene #48: 'Del Peak 19(9q34.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2.47e-05 (Fisher's exact test), Q value = 0.0075
Table S422. Gene #48: 'Del Peak 19(9q34.2)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| DEL PEAK 19(9Q34.2) CNV | 63 | 33 | 21 |
| DEL PEAK 19(9Q34.2) WILD-TYPE | 84 | 100 | 96 |
Figure S422. Get High-res Image Gene #48: 'Del Peak 19(9q34.2)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 0.000733 (Fisher's exact test), Q value = 0.17
Table S423. Gene #48: 'Del Peak 19(9q34.2)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| DEL PEAK 19(9Q34.2) CNV | 44 | 21 | 52 |
| DEL PEAK 19(9Q34.2) WILD-TYPE | 117 | 89 | 74 |
Figure S423. Get High-res Image Gene #48: 'Del Peak 19(9q34.2)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 6.46e-26 (Chi-square test), Q value = 5e-23
Table S424. Gene #48: 'Del Peak 19(9q34.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 19(9Q34.2) CNV | 96 | 10 | 33 | 36 | 75 | 3 | 7 |
| DEL PEAK 19(9Q34.2) WILD-TYPE | 79 | 129 | 184 | 118 | 149 | 44 | 8 |
Figure S424. Get High-res Image Gene #48: 'Del Peak 19(9q34.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.02e-18 (Fisher's exact test), Q value = 7e-16
Table S425. Gene #48: 'Del Peak 19(9q34.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 19(9Q34.2) CNV | 35 | 115 | 110 |
| DEL PEAK 19(9Q34.2) WILD-TYPE | 256 | 131 | 324 |
Figure S425. Get High-res Image Gene #48: 'Del Peak 19(9q34.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2.4e-23 (Fisher's exact test), Q value = 1.8e-20
Table S426. Gene #48: 'Del Peak 19(9q34.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 19(9Q34.2) CNV | 26 | 99 | 131 |
| DEL PEAK 19(9Q34.2) WILD-TYPE | 248 | 314 | 148 |
Figure S426. Get High-res Image Gene #48: 'Del Peak 19(9q34.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3.26e-26 (Fisher's exact test), Q value = 2.5e-23
Table S427. Gene #48: 'Del Peak 19(9q34.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 19(9Q34.2) CNV | 116 | 42 | 98 |
| DEL PEAK 19(9Q34.2) WILD-TYPE | 109 | 334 | 267 |
Figure S427. Get High-res Image Gene #48: 'Del Peak 19(9q34.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.07e-16 (Fisher's exact test), Q value = 7.1e-14
Table S428. Gene #48: 'Del Peak 19(9q34.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 19(9Q34.2) CNV | 47 | 25 | 93 |
| DEL PEAK 19(9Q34.2) WILD-TYPE | 203 | 185 | 103 |
Figure S428. Get High-res Image Gene #48: 'Del Peak 19(9q34.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 6.17e-17 (Fisher's exact test), Q value = 4.1e-14
Table S429. Gene #48: 'Del Peak 19(9q34.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 19(9Q34.2) CNV | 18 | 57 | 90 |
| DEL PEAK 19(9Q34.2) WILD-TYPE | 142 | 254 | 95 |
Figure S429. Get High-res Image Gene #48: 'Del Peak 19(9q34.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 2.45e-05 (Chi-square test), Q value = 0.0075
Table S430. Gene #49: 'Del Peak 20(10q23.31)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 20(10Q23.31) CNV | 7 | 7 | 35 | 46 | 21 | 20 | 7 | 3 |
| DEL PEAK 20(10Q23.31) WILD-TYPE | 14 | 29 | 84 | 50 | 88 | 52 | 13 | 37 |
Figure S430. Get High-res Image Gene #49: 'Del Peak 20(10q23.31)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 5.63e-05 (Fisher's exact test), Q value = 0.016
Table S431. Gene #49: 'Del Peak 20(10q23.31)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 20(10Q23.31) CNV | 21 | 53 | 72 |
| DEL PEAK 20(10Q23.31) WILD-TYPE | 101 | 72 | 194 |
Figure S431. Get High-res Image Gene #49: 'Del Peak 20(10q23.31)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 4.87e-22 (Chi-square test), Q value = 3.6e-19
Table S432. Gene #49: 'Del Peak 20(10q23.31)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 20(10Q23.31) CNV | 44 | 78 | 21 | 123 | 17 |
| DEL PEAK 20(10Q23.31) WILD-TYPE | 330 | 154 | 58 | 129 | 31 |
Figure S432. Get High-res Image Gene #49: 'Del Peak 20(10q23.31)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 5.74e-12 (Chi-square test), Q value = 3.2e-09
Table S433. Gene #49: 'Del Peak 20(10q23.31)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 20(10Q23.31) CNV | 60 | 24 | 31 | 50 | 11 | 19 |
| DEL PEAK 20(10Q23.31) WILD-TYPE | 49 | 131 | 75 | 86 | 33 | 94 |
Figure S433. Get High-res Image Gene #49: 'Del Peak 20(10q23.31)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.9e-07 (Fisher's exact test), Q value = 7.9e-05
Table S434. Gene #49: 'Del Peak 20(10q23.31)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| DEL PEAK 20(10Q23.31) CNV | 67 | 30 | 19 |
| DEL PEAK 20(10Q23.31) WILD-TYPE | 80 | 103 | 98 |
Figure S434. Get High-res Image Gene #49: 'Del Peak 20(10q23.31)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 7.37e-05 (Fisher's exact test), Q value = 0.02
Table S435. Gene #49: 'Del Peak 20(10q23.31)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| DEL PEAK 20(10Q23.31) CNV | 45 | 18 | 53 |
| DEL PEAK 20(10Q23.31) WILD-TYPE | 116 | 92 | 73 |
Figure S435. Get High-res Image Gene #49: 'Del Peak 20(10q23.31)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 2.1e-15 (Chi-square test), Q value = 1.3e-12
Table S436. Gene #49: 'Del Peak 20(10q23.31)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 20(10Q23.31) CNV | 87 | 23 | 37 | 54 | 73 | 2 | 3 |
| DEL PEAK 20(10Q23.31) WILD-TYPE | 88 | 116 | 180 | 100 | 151 | 45 | 12 |
Figure S436. Get High-res Image Gene #49: 'Del Peak 20(10q23.31)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.06e-12 (Fisher's exact test), Q value = 6.3e-10
Table S437. Gene #49: 'Del Peak 20(10q23.31)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 20(10Q23.31) CNV | 48 | 112 | 119 |
| DEL PEAK 20(10Q23.31) WILD-TYPE | 243 | 134 | 315 |
Figure S437. Get High-res Image Gene #49: 'Del Peak 20(10q23.31)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 3.72e-11 (Fisher's exact test), Q value = 2e-08
Table S438. Gene #49: 'Del Peak 20(10q23.31)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 20(10Q23.31) CNV | 52 | 99 | 123 |
| DEL PEAK 20(10Q23.31) WILD-TYPE | 222 | 314 | 156 |
Figure S438. Get High-res Image Gene #49: 'Del Peak 20(10q23.31)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.82e-14 (Fisher's exact test), Q value = 1.8e-11
Table S439. Gene #49: 'Del Peak 20(10q23.31)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 20(10Q23.31) CNV | 109 | 68 | 97 |
| DEL PEAK 20(10Q23.31) WILD-TYPE | 116 | 308 | 268 |
Figure S439. Get High-res Image Gene #49: 'Del Peak 20(10q23.31)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 7.76e-10 (Fisher's exact test), Q value = 3.9e-07
Table S440. Gene #49: 'Del Peak 20(10q23.31)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 20(10Q23.31) CNV | 56 | 38 | 89 |
| DEL PEAK 20(10Q23.31) WILD-TYPE | 194 | 172 | 107 |
Figure S440. Get High-res Image Gene #49: 'Del Peak 20(10q23.31)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 6.77e-09 (Fisher's exact test), Q value = 3.2e-06
Table S441. Gene #49: 'Del Peak 20(10q23.31)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 20(10Q23.31) CNV | 31 | 68 | 84 |
| DEL PEAK 20(10Q23.31) WILD-TYPE | 129 | 243 | 101 |
Figure S441. Get High-res Image Gene #49: 'Del Peak 20(10q23.31)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.01e-08 (Chi-square test), Q value = 4.7e-06
Table S442. Gene #50: 'Del Peak 21(10q26.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 21(10Q26.3) CNV | 8 | 8 | 37 | 53 | 16 | 21 | 6 | 4 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 13 | 28 | 82 | 43 | 93 | 51 | 14 | 36 |
Figure S442. Get High-res Image Gene #50: 'Del Peak 21(10q26.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 2.75e-07 (Fisher's exact test), Q value = 0.00011
Table S443. Gene #50: 'Del Peak 21(10q26.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 21(10Q26.3) CNV | 19 | 59 | 75 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 103 | 66 | 191 |
Figure S443. Get High-res Image Gene #50: 'Del Peak 21(10q26.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 3.2e-25 (Chi-square test), Q value = 2.5e-22
Table S444. Gene #50: 'Del Peak 21(10q26.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 21(10Q26.3) CNV | 43 | 82 | 19 | 129 | 14 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 331 | 150 | 60 | 123 | 34 |
Figure S444. Get High-res Image Gene #50: 'Del Peak 21(10q26.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 8.14e-14 (Chi-square test), Q value = 5e-11
Table S445. Gene #50: 'Del Peak 21(10q26.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 21(10Q26.3) CNV | 62 | 20 | 38 | 43 | 11 | 20 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 47 | 135 | 68 | 93 | 33 | 93 |
Figure S445. Get High-res Image Gene #50: 'Del Peak 21(10q26.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 3.06e-08 (Fisher's exact test), Q value = 1.4e-05
Table S446. Gene #50: 'Del Peak 21(10q26.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| DEL PEAK 21(10Q26.3) CNV | 72 | 27 | 24 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 75 | 106 | 93 |
Figure S446. Get High-res Image Gene #50: 'Del Peak 21(10q26.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 8.25e-07 (Fisher's exact test), Q value = 0.00032
Table S447. Gene #50: 'Del Peak 21(10q26.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| DEL PEAK 21(10Q26.3) CNV | 45 | 18 | 60 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 116 | 92 | 66 |
Figure S447. Get High-res Image Gene #50: 'Del Peak 21(10q26.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 3.22e-20 (Chi-square test), Q value = 2.3e-17
Table S448. Gene #50: 'Del Peak 21(10q26.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 21(10Q26.3) CNV | 93 | 18 | 32 | 60 | 71 | 6 | 2 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 82 | 121 | 185 | 94 | 153 | 41 | 13 |
Figure S448. Get High-res Image Gene #50: 'Del Peak 21(10q26.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.86e-17 (Fisher's exact test), Q value = 1.3e-14
Table S449. Gene #50: 'Del Peak 21(10q26.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 21(10Q26.3) CNV | 42 | 120 | 120 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 249 | 126 | 314 |
Figure S449. Get High-res Image Gene #50: 'Del Peak 21(10q26.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 7.44e-15 (Fisher's exact test), Q value = 4.7e-12
Table S450. Gene #50: 'Del Peak 21(10q26.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 21(10Q26.3) CNV | 44 | 103 | 129 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 230 | 310 | 150 |
Figure S450. Get High-res Image Gene #50: 'Del Peak 21(10q26.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.12e-19 (Fisher's exact test), Q value = 1.5e-16
Table S451. Gene #50: 'Del Peak 21(10q26.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 21(10Q26.3) CNV | 114 | 57 | 105 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 111 | 319 | 260 |
Figure S451. Get High-res Image Gene #50: 'Del Peak 21(10q26.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.12e-12 (Fisher's exact test), Q value = 6.6e-10
Table S452. Gene #50: 'Del Peak 21(10q26.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 21(10Q26.3) CNV | 62 | 32 | 94 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 188 | 178 | 102 |
Figure S452. Get High-res Image Gene #50: 'Del Peak 21(10q26.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 5.7e-12 (Fisher's exact test), Q value = 3.2e-09
Table S453. Gene #50: 'Del Peak 21(10q26.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 21(10Q26.3) CNV | 25 | 73 | 90 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 135 | 238 | 95 |
Figure S453. Get High-res Image Gene #50: 'Del Peak 21(10q26.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 3.55e-07 (Chi-square test), Q value = 0.00014
Table S454. Gene #51: 'Del Peak 22(11p15.5)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 22(11P15.5) CNV | 3 | 8 | 32 | 46 | 14 | 32 | 7 | 9 |
| DEL PEAK 22(11P15.5) WILD-TYPE | 18 | 28 | 87 | 50 | 95 | 40 | 13 | 31 |
Figure S454. Get High-res Image Gene #51: 'Del Peak 22(11p15.5)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 2.1e-07 (Fisher's exact test), Q value = 8.7e-05
Table S455. Gene #51: 'Del Peak 22(11p15.5)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 22(11P15.5) CNV | 26 | 62 | 63 |
| DEL PEAK 22(11P15.5) WILD-TYPE | 96 | 63 | 203 |
Figure S455. Get High-res Image Gene #51: 'Del Peak 22(11p15.5)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1.89e-36 (Chi-square test), Q value = 1.5e-33
Table S456. Gene #51: 'Del Peak 22(11p15.5)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 22(11P15.5) CNV | 34 | 76 | 20 | 143 | 8 |
| DEL PEAK 22(11P15.5) WILD-TYPE | 340 | 156 | 59 | 109 | 40 |
Figure S456. Get High-res Image Gene #51: 'Del Peak 22(11p15.5)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 4.7e-14 (Chi-square test), Q value = 2.9e-11
Table S457. Gene #51: 'Del Peak 22(11p15.5)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 22(11P15.5) CNV | 57 | 14 | 33 | 45 | 9 | 19 |
| DEL PEAK 22(11P15.5) WILD-TYPE | 52 | 141 | 73 | 91 | 35 | 94 |
Figure S457. Get High-res Image Gene #51: 'Del Peak 22(11p15.5)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.27e-09 (Fisher's exact test), Q value = 6.3e-07
Table S458. Gene #51: 'Del Peak 22(11p15.5)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| DEL PEAK 22(11P15.5) CNV | 76 | 26 | 25 |
| DEL PEAK 22(11P15.5) WILD-TYPE | 71 | 107 | 92 |
Figure S458. Get High-res Image Gene #51: 'Del Peak 22(11p15.5)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 1.65e-06 (Fisher's exact test), Q value = 6e-04
Table S459. Gene #51: 'Del Peak 22(11p15.5)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| DEL PEAK 22(11P15.5) CNV | 38 | 26 | 63 |
| DEL PEAK 22(11P15.5) WILD-TYPE | 123 | 84 | 63 |
Figure S459. Get High-res Image Gene #51: 'Del Peak 22(11p15.5)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 4.07e-17 (Chi-square test), Q value = 2.7e-14
Table S460. Gene #51: 'Del Peak 22(11p15.5)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 22(11P15.5) CNV | 84 | 21 | 26 | 64 | 67 | 9 | 5 |
| DEL PEAK 22(11P15.5) WILD-TYPE | 91 | 118 | 191 | 90 | 157 | 38 | 10 |
Figure S460. Get High-res Image Gene #51: 'Del Peak 22(11p15.5)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 3.46e-15 (Fisher's exact test), Q value = 2.2e-12
Table S461. Gene #51: 'Del Peak 22(11p15.5)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 22(11P15.5) CNV | 50 | 119 | 107 |
| DEL PEAK 22(11P15.5) WILD-TYPE | 241 | 127 | 327 |
Figure S461. Get High-res Image Gene #51: 'Del Peak 22(11p15.5)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.8e-19 (Fisher's exact test), Q value = 1.3e-16
Table S462. Gene #51: 'Del Peak 22(11p15.5)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 22(11P15.5) CNV | 44 | 91 | 138 |
| DEL PEAK 22(11P15.5) WILD-TYPE | 230 | 322 | 141 |
Figure S462. Get High-res Image Gene #51: 'Del Peak 22(11p15.5)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3.48e-17 (Fisher's exact test), Q value = 2.3e-14
Table S463. Gene #51: 'Del Peak 22(11p15.5)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 22(11P15.5) CNV | 113 | 63 | 97 |
| DEL PEAK 22(11P15.5) WILD-TYPE | 112 | 313 | 268 |
Figure S463. Get High-res Image Gene #51: 'Del Peak 22(11p15.5)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2.07e-13 (Fisher's exact test), Q value = 1.2e-10
Table S464. Gene #51: 'Del Peak 22(11p15.5)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 22(11P15.5) CNV | 53 | 33 | 94 |
| DEL PEAK 22(11P15.5) WILD-TYPE | 197 | 177 | 102 |
Figure S464. Get High-res Image Gene #51: 'Del Peak 22(11p15.5)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1.6e-12 (Fisher's exact test), Q value = 9.3e-10
Table S465. Gene #51: 'Del Peak 22(11p15.5)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 22(11P15.5) CNV | 25 | 66 | 89 |
| DEL PEAK 22(11P15.5) WILD-TYPE | 135 | 245 | 96 |
Figure S465. Get High-res Image Gene #51: 'Del Peak 22(11p15.5)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 6.75e-16 (Chi-square test), Q value = 4.4e-13
Table S466. Gene #52: 'Del Peak 23(11q13.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 23(11Q13.1) CNV | 34 | 88 | 25 | 51 | 10 |
| DEL PEAK 23(11Q13.1) WILD-TYPE | 340 | 144 | 54 | 201 | 38 |
Figure S466. Get High-res Image Gene #52: 'Del Peak 23(11q13.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 4.04e-08 (Chi-square test), Q value = 1.8e-05
Table S467. Gene #52: 'Del Peak 23(11q13.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 23(11Q13.1) CNV | 22 | 18 | 33 | 47 | 7 | 9 |
| DEL PEAK 23(11Q13.1) WILD-TYPE | 87 | 137 | 73 | 89 | 37 | 104 |
Figure S467. Get High-res Image Gene #52: 'Del Peak 23(11q13.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 6.01e-09 (Chi-square test), Q value = 2.8e-06
Table S468. Gene #52: 'Del Peak 23(11q13.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 23(11Q13.1) CNV | 32 | 21 | 31 | 28 | 85 | 8 | 2 |
| DEL PEAK 23(11Q13.1) WILD-TYPE | 143 | 118 | 186 | 126 | 139 | 39 | 13 |
Figure S468. Get High-res Image Gene #52: 'Del Peak 23(11q13.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.000219 (Fisher's exact test), Q value = 0.055
Table S469. Gene #52: 'Del Peak 23(11q13.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 23(11Q13.1) CNV | 44 | 45 | 118 |
| DEL PEAK 23(11Q13.1) WILD-TYPE | 247 | 201 | 316 |
Figure S469. Get High-res Image Gene #52: 'Del Peak 23(11q13.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.86e-07 (Chi-square test), Q value = 7.7e-05
Table S470. Gene #53: 'Del Peak 24(11q23.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 24(11Q23.2) CNV | 12 | 21 | 87 | 38 | 36 | 37 | 12 | 22 |
| DEL PEAK 24(11Q23.2) WILD-TYPE | 9 | 15 | 32 | 58 | 73 | 35 | 8 | 18 |
Figure S470. Get High-res Image Gene #53: 'Del Peak 24(11q23.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 5.01e-39 (Chi-square test), Q value = 4.1e-36
Table S471. Gene #53: 'Del Peak 24(11q23.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 24(11Q23.2) CNV | 105 | 196 | 39 | 130 | 18 |
| DEL PEAK 24(11Q23.2) WILD-TYPE | 269 | 36 | 40 | 122 | 30 |
Figure S471. Get High-res Image Gene #53: 'Del Peak 24(11q23.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.95e-14 (Chi-square test), Q value = 1.8e-11
Table S472. Gene #53: 'Del Peak 24(11q23.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 24(11Q23.2) CNV | 48 | 52 | 69 | 99 | 20 | 35 |
| DEL PEAK 24(11Q23.2) WILD-TYPE | 61 | 103 | 37 | 37 | 24 | 78 |
Figure S472. Get High-res Image Gene #53: 'Del Peak 24(11q23.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.68e-15 (Chi-square test), Q value = 1.1e-12
Table S473. Gene #53: 'Del Peak 24(11q23.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 24(11Q23.2) CNV | 73 | 62 | 72 | 80 | 165 | 22 | 8 |
| DEL PEAK 24(11Q23.2) WILD-TYPE | 102 | 77 | 145 | 74 | 59 | 25 | 7 |
Figure S473. Get High-res Image Gene #53: 'Del Peak 24(11q23.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.000753 (Fisher's exact test), Q value = 0.17
Table S474. Gene #53: 'Del Peak 24(11q23.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 24(11Q23.2) CNV | 134 | 104 | 244 |
| DEL PEAK 24(11Q23.2) WILD-TYPE | 157 | 142 | 190 |
Figure S474. Get High-res Image Gene #53: 'Del Peak 24(11q23.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 7.06e-07 (Fisher's exact test), Q value = 0.00027
Table S475. Gene #53: 'Del Peak 24(11q23.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 24(11Q23.2) CNV | 98 | 157 | 219 |
| DEL PEAK 24(11Q23.2) WILD-TYPE | 127 | 219 | 146 |
Figure S475. Get High-res Image Gene #53: 'Del Peak 24(11q23.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00072 (Chi-square test), Q value = 0.16
Table S476. Gene #54: 'Del Peak 25(11q25)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 25(11Q25) CNV | 10 | 20 | 75 | 45 | 34 | 37 | 12 | 20 |
| DEL PEAK 25(11Q25) WILD-TYPE | 11 | 16 | 44 | 51 | 75 | 35 | 8 | 20 |
Figure S476. Get High-res Image Gene #54: 'Del Peak 25(11q25)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 2.14e-36 (Chi-square test), Q value = 1.7e-33
Table S477. Gene #54: 'Del Peak 25(11q25)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 25(11Q25) CNV | 91 | 181 | 35 | 131 | 16 |
| DEL PEAK 25(11Q25) WILD-TYPE | 283 | 51 | 44 | 121 | 32 |
Figure S477. Get High-res Image Gene #54: 'Del Peak 25(11q25)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.17e-11 (Chi-square test), Q value = 1.2e-08
Table S478. Gene #54: 'Del Peak 25(11q25)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 25(11Q25) CNV | 51 | 45 | 64 | 87 | 16 | 33 |
| DEL PEAK 25(11Q25) WILD-TYPE | 58 | 110 | 42 | 49 | 28 | 80 |
Figure S478. Get High-res Image Gene #54: 'Del Peak 25(11q25)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.37e-11 (Chi-square test), Q value = 7.6e-09
Table S479. Gene #54: 'Del Peak 25(11q25)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 25(11Q25) CNV | 82 | 58 | 62 | 72 | 147 | 22 | 6 |
| DEL PEAK 25(11Q25) WILD-TYPE | 93 | 81 | 155 | 82 | 77 | 25 | 9 |
Figure S479. Get High-res Image Gene #54: 'Del Peak 25(11q25)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 7.44e-05 (Fisher's exact test), Q value = 0.021
Table S480. Gene #54: 'Del Peak 25(11q25)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 25(11Q25) CNV | 104 | 142 | 196 |
| DEL PEAK 25(11Q25) WILD-TYPE | 121 | 234 | 169 |
Figure S480. Get High-res Image Gene #54: 'Del Peak 25(11q25)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2e-04 (Chi-square test), Q value = 0.05
Table S481. Gene #55: 'Del Peak 26(12p13.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 26(12P13.1) CNV | 40 | 51 | 12 | 58 | 6 |
| DEL PEAK 26(12P13.1) WILD-TYPE | 334 | 181 | 67 | 194 | 42 |
Figure S481. Get High-res Image Gene #55: 'Del Peak 26(12p13.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 7.45e-05 (Fisher's exact test), Q value = 0.021
Table S482. Gene #55: 'Del Peak 26(12p13.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 26(12P13.1) CNV | 28 | 69 | 67 |
| DEL PEAK 26(12P13.1) WILD-TYPE | 246 | 344 | 212 |
Figure S482. Get High-res Image Gene #55: 'Del Peak 26(12p13.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 4.48e-06 (Fisher's exact test), Q value = 0.0015
Table S483. Gene #55: 'Del Peak 26(12p13.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 26(12P13.1) CNV | 56 | 38 | 70 |
| DEL PEAK 26(12P13.1) WILD-TYPE | 169 | 338 | 295 |
Figure S483. Get High-res Image Gene #55: 'Del Peak 26(12p13.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.000504 (Fisher's exact test), Q value = 0.12
Table S484. Gene #55: 'Del Peak 26(12p13.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 26(12P13.1) CNV | 19 | 40 | 47 |
| DEL PEAK 26(12P13.1) WILD-TYPE | 141 | 271 | 138 |
Figure S484. Get High-res Image Gene #55: 'Del Peak 26(12p13.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 5.25e-10 (Chi-square test), Q value = 2.7e-07
Table S485. Gene #56: 'Del Peak 27(12q24.31)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 27(12Q24.31) CNV | 4 | 6 | 12 | 40 | 5 | 20 | 5 | 6 |
| DEL PEAK 27(12Q24.31) WILD-TYPE | 17 | 30 | 107 | 56 | 104 | 52 | 15 | 34 |
Figure S485. Get High-res Image Gene #56: 'Del Peak 27(12q24.31)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 8.48e-10 (Fisher's exact test), Q value = 4.2e-07
Table S486. Gene #56: 'Del Peak 27(12q24.31)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 27(12Q24.31) CNV | 14 | 50 | 34 |
| DEL PEAK 27(12Q24.31) WILD-TYPE | 108 | 75 | 232 |
Figure S486. Get High-res Image Gene #56: 'Del Peak 27(12q24.31)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1.48e-22 (Chi-square test), Q value = 1.1e-19
Table S487. Gene #56: 'Del Peak 27(12q24.31)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 27(12Q24.31) CNV | 35 | 24 | 14 | 100 | 6 |
| DEL PEAK 27(12Q24.31) WILD-TYPE | 339 | 208 | 65 | 152 | 42 |
Figure S487. Get High-res Image Gene #56: 'Del Peak 27(12q24.31)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 5.16e-19 (Chi-square test), Q value = 3.6e-16
Table S488. Gene #56: 'Del Peak 27(12q24.31)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 27(12Q24.31) CNV | 54 | 11 | 18 | 19 | 3 | 13 |
| DEL PEAK 27(12Q24.31) WILD-TYPE | 55 | 144 | 88 | 117 | 41 | 100 |
Figure S488. Get High-res Image Gene #56: 'Del Peak 27(12q24.31)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.14e-05 (Fisher's exact test), Q value = 0.0036
Table S489. Gene #56: 'Del Peak 27(12q24.31)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| DEL PEAK 27(12Q24.31) CNV | 46 | 12 | 20 |
| DEL PEAK 27(12Q24.31) WILD-TYPE | 101 | 121 | 97 |
Figure S489. Get High-res Image Gene #56: 'Del Peak 27(12q24.31)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 7.45e-07 (Fisher's exact test), Q value = 0.00029
Table S490. Gene #56: 'Del Peak 27(12q24.31)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| DEL PEAK 27(12Q24.31) CNV | 20 | 13 | 45 |
| DEL PEAK 27(12Q24.31) WILD-TYPE | 141 | 97 | 81 |
Figure S490. Get High-res Image Gene #56: 'Del Peak 27(12q24.31)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 4.41e-19 (Chi-square test), Q value = 3.1e-16
Table S491. Gene #56: 'Del Peak 27(12q24.31)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 27(12Q24.31) CNV | 72 | 15 | 17 | 40 | 24 | 6 | 2 |
| DEL PEAK 27(12Q24.31) WILD-TYPE | 103 | 124 | 200 | 114 | 200 | 41 | 13 |
Figure S491. Get High-res Image Gene #56: 'Del Peak 27(12q24.31)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.84e-17 (Fisher's exact test), Q value = 1.2e-14
Table S492. Gene #56: 'Del Peak 27(12q24.31)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 27(12Q24.31) CNV | 32 | 93 | 51 |
| DEL PEAK 27(12Q24.31) WILD-TYPE | 259 | 153 | 383 |
Figure S492. Get High-res Image Gene #56: 'Del Peak 27(12q24.31)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 5.64e-12 (Fisher's exact test), Q value = 3.2e-09
Table S493. Gene #56: 'Del Peak 27(12q24.31)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 27(12Q24.31) CNV | 29 | 56 | 91 |
| DEL PEAK 27(12Q24.31) WILD-TYPE | 245 | 357 | 188 |
Figure S493. Get High-res Image Gene #56: 'Del Peak 27(12q24.31)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.4e-13 (Fisher's exact test), Q value = 1.4e-10
Table S494. Gene #56: 'Del Peak 27(12q24.31)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 27(12Q24.31) CNV | 81 | 41 | 54 |
| DEL PEAK 27(12Q24.31) WILD-TYPE | 144 | 335 | 311 |
Figure S494. Get High-res Image Gene #56: 'Del Peak 27(12q24.31)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.41e-09 (Fisher's exact test), Q value = 6.9e-07
Table S495. Gene #56: 'Del Peak 27(12q24.31)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 27(12Q24.31) CNV | 33 | 22 | 66 |
| DEL PEAK 27(12Q24.31) WILD-TYPE | 217 | 188 | 130 |
Figure S495. Get High-res Image Gene #56: 'Del Peak 27(12q24.31)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 7.62e-11 (Fisher's exact test), Q value = 4e-08
Table S496. Gene #56: 'Del Peak 27(12q24.31)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 27(12Q24.31) CNV | 18 | 37 | 66 |
| DEL PEAK 27(12Q24.31) WILD-TYPE | 142 | 274 | 119 |
Figure S496. Get High-res Image Gene #56: 'Del Peak 27(12q24.31)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 9.2e-05 (Chi-square test), Q value = 0.025
Table S497. Gene #57: 'Del Peak 28(13q11)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 28(13Q11) CNV | 5 | 9 | 58 | 47 | 29 | 39 | 10 | 11 |
| DEL PEAK 28(13Q11) WILD-TYPE | 16 | 27 | 61 | 49 | 80 | 33 | 10 | 29 |
Figure S497. Get High-res Image Gene #57: 'Del Peak 28(13q11)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.000958 (Fisher's exact test), Q value = 0.21
Table S498. Gene #57: 'Del Peak 28(13q11)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 28(13Q11) CNV | 35 | 65 | 108 |
| DEL PEAK 28(13Q11) WILD-TYPE | 87 | 60 | 158 |
Figure S498. Get High-res Image Gene #57: 'Del Peak 28(13q11)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 4.27e-31 (Chi-square test), Q value = 3.4e-28
Table S499. Gene #57: 'Del Peak 28(13q11)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 28(13Q11) CNV | 58 | 126 | 48 | 135 | 23 |
| DEL PEAK 28(13Q11) WILD-TYPE | 316 | 106 | 31 | 117 | 25 |
Figure S499. Get High-res Image Gene #57: 'Del Peak 28(13q11)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 6.93e-09 (Chi-square test), Q value = 3.2e-06
Table S500. Gene #57: 'Del Peak 28(13q11)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 28(13Q11) CNV | 59 | 37 | 55 | 63 | 7 | 39 |
| DEL PEAK 28(13Q11) WILD-TYPE | 50 | 118 | 51 | 73 | 37 | 74 |
Figure S500. Get High-res Image Gene #57: 'Del Peak 28(13q11)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 7.18e-09 (Chi-square test), Q value = 3.4e-06
Table S501. Gene #57: 'Del Peak 28(13q11)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 28(13Q11) CNV | 96 | 36 | 62 | 74 | 97 | 12 | 7 |
| DEL PEAK 28(13Q11) WILD-TYPE | 79 | 103 | 155 | 80 | 127 | 35 | 8 |
Figure S501. Get High-res Image Gene #57: 'Del Peak 28(13q11)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.23e-09 (Fisher's exact test), Q value = 6.1e-07
Table S502. Gene #57: 'Del Peak 28(13q11)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 28(13Q11) CNV | 81 | 135 | 168 |
| DEL PEAK 28(13Q11) WILD-TYPE | 210 | 111 | 266 |
Figure S502. Get High-res Image Gene #57: 'Del Peak 28(13q11)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.66e-06 (Fisher's exact test), Q value = 6e-04
Table S503. Gene #57: 'Del Peak 28(13q11)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 28(13Q11) CNV | 78 | 164 | 139 |
| DEL PEAK 28(13Q11) WILD-TYPE | 196 | 249 | 140 |
Figure S503. Get High-res Image Gene #57: 'Del Peak 28(13q11)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.15e-06 (Fisher's exact test), Q value = 0.00077
Table S504. Gene #57: 'Del Peak 28(13q11)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 28(13Q11) CNV | 114 | 114 | 153 |
| DEL PEAK 28(13Q11) WILD-TYPE | 111 | 262 | 212 |
Figure S504. Get High-res Image Gene #57: 'Del Peak 28(13q11)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2.66e-08 (Fisher's exact test), Q value = 1.2e-05
Table S505. Gene #57: 'Del Peak 28(13q11)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 28(13Q11) CNV | 93 | 54 | 106 |
| DEL PEAK 28(13Q11) WILD-TYPE | 157 | 156 | 90 |
Figure S505. Get High-res Image Gene #57: 'Del Peak 28(13q11)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 4.51e-06 (Fisher's exact test), Q value = 0.0015
Table S506. Gene #57: 'Del Peak 28(13q11)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 28(13Q11) CNV | 45 | 110 | 98 |
| DEL PEAK 28(13Q11) WILD-TYPE | 115 | 201 | 87 |
Figure S506. Get High-res Image Gene #57: 'Del Peak 28(13q11)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 6.7e-05 (Chi-square test), Q value = 0.019
Table S507. Gene #58: 'Del Peak 29(13q14.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 29(13Q14.2) CNV | 8 | 12 | 70 | 56 | 34 | 39 | 9 | 13 |
| DEL PEAK 29(13Q14.2) WILD-TYPE | 13 | 24 | 49 | 40 | 75 | 33 | 11 | 27 |
Figure S507. Get High-res Image Gene #58: 'Del Peak 29(13q14.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 2.5e-05 (Fisher's exact test), Q value = 0.0076
Table S508. Gene #58: 'Del Peak 29(13q14.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 29(13Q14.2) CNV | 38 | 75 | 128 |
| DEL PEAK 29(13Q14.2) WILD-TYPE | 84 | 50 | 138 |
Figure S508. Get High-res Image Gene #58: 'Del Peak 29(13q14.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 7.35e-41 (Chi-square test), Q value = 6e-38
Table S509. Gene #58: 'Del Peak 29(13q14.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 29(13Q14.2) CNV | 66 | 147 | 59 | 147 | 28 |
| DEL PEAK 29(13Q14.2) WILD-TYPE | 308 | 85 | 20 | 105 | 20 |
Figure S509. Get High-res Image Gene #58: 'Del Peak 29(13q14.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.31e-08 (Chi-square test), Q value = 6e-06
Table S510. Gene #58: 'Del Peak 29(13q14.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 29(13Q14.2) CNV | 66 | 46 | 60 | 72 | 12 | 39 |
| DEL PEAK 29(13Q14.2) WILD-TYPE | 43 | 109 | 46 | 64 | 32 | 74 |
Figure S510. Get High-res Image Gene #58: 'Del Peak 29(13q14.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 7.76e-10 (Chi-square test), Q value = 3.9e-07
Table S511. Gene #58: 'Del Peak 29(13q14.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 29(13Q14.2) CNV | 107 | 39 | 79 | 77 | 118 | 13 | 8 |
| DEL PEAK 29(13Q14.2) WILD-TYPE | 68 | 100 | 138 | 77 | 106 | 34 | 7 |
Figure S511. Get High-res Image Gene #58: 'Del Peak 29(13q14.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.15e-09 (Fisher's exact test), Q value = 5.7e-07
Table S512. Gene #58: 'Del Peak 29(13q14.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 29(13Q14.2) CNV | 93 | 146 | 202 |
| DEL PEAK 29(13Q14.2) WILD-TYPE | 198 | 100 | 232 |
Figure S512. Get High-res Image Gene #58: 'Del Peak 29(13q14.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.99e-09 (Fisher's exact test), Q value = 9.7e-07
Table S513. Gene #58: 'Del Peak 29(13q14.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 29(13Q14.2) CNV | 82 | 199 | 155 |
| DEL PEAK 29(13Q14.2) WILD-TYPE | 192 | 214 | 124 |
Figure S513. Get High-res Image Gene #58: 'Del Peak 29(13q14.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 5.25e-09 (Fisher's exact test), Q value = 2.5e-06
Table S514. Gene #58: 'Del Peak 29(13q14.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 29(13Q14.2) CNV | 128 | 125 | 183 |
| DEL PEAK 29(13Q14.2) WILD-TYPE | 97 | 251 | 182 |
Figure S514. Get High-res Image Gene #58: 'Del Peak 29(13q14.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 8.03e-10 (Fisher's exact test), Q value = 4e-07
Table S515. Gene #58: 'Del Peak 29(13q14.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 29(13Q14.2) CNV | 109 | 57 | 115 |
| DEL PEAK 29(13Q14.2) WILD-TYPE | 141 | 153 | 81 |
Figure S515. Get High-res Image Gene #58: 'Del Peak 29(13q14.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 2.39e-06 (Fisher's exact test), Q value = 0.00085
Table S516. Gene #58: 'Del Peak 29(13q14.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 29(13Q14.2) CNV | 48 | 128 | 105 |
| DEL PEAK 29(13Q14.2) WILD-TYPE | 112 | 183 | 80 |
Figure S516. Get High-res Image Gene #58: 'Del Peak 29(13q14.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.18e-13 (Chi-square test), Q value = 7.2e-11
Table S517. Gene #59: 'Del Peak 30(14q24.1)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 30(14Q24.1) CNV | 4 | 8 | 46 | 59 | 10 | 21 | 10 | 8 |
| DEL PEAK 30(14Q24.1) WILD-TYPE | 17 | 28 | 73 | 37 | 99 | 51 | 10 | 32 |
Figure S517. Get High-res Image Gene #59: 'Del Peak 30(14q24.1)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 1.61e-08 (Fisher's exact test), Q value = 7.4e-06
Table S518. Gene #59: 'Del Peak 30(14q24.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 30(14Q24.1) CNV | 27 | 68 | 71 |
| DEL PEAK 30(14Q24.1) WILD-TYPE | 95 | 57 | 195 |
Figure S518. Get High-res Image Gene #59: 'Del Peak 30(14q24.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 2.98e-40 (Chi-square test), Q value = 2.4e-37
Table S519. Gene #59: 'Del Peak 30(14q24.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 30(14Q24.1) CNV | 40 | 78 | 17 | 157 | 19 |
| DEL PEAK 30(14Q24.1) WILD-TYPE | 334 | 154 | 62 | 95 | 29 |
Figure S519. Get High-res Image Gene #59: 'Del Peak 30(14q24.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 9.21e-19 (Chi-square test), Q value = 6.4e-16
Table S520. Gene #59: 'Del Peak 30(14q24.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 30(14Q24.1) CNV | 71 | 21 | 33 | 50 | 8 | 22 |
| DEL PEAK 30(14Q24.1) WILD-TYPE | 38 | 134 | 73 | 86 | 36 | 91 |
Figure S520. Get High-res Image Gene #59: 'Del Peak 30(14q24.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 4.19e-07 (Fisher's exact test), Q value = 0.00017
Table S521. Gene #59: 'Del Peak 30(14q24.1)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| DEL PEAK 30(14Q24.1) CNV | 73 | 27 | 32 |
| DEL PEAK 30(14Q24.1) WILD-TYPE | 74 | 106 | 85 |
Figure S521. Get High-res Image Gene #59: 'Del Peak 30(14q24.1)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 3.69e-06 (Fisher's exact test), Q value = 0.0013
Table S522. Gene #59: 'Del Peak 30(14q24.1)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| DEL PEAK 30(14Q24.1) CNV | 42 | 26 | 64 |
| DEL PEAK 30(14Q24.1) WILD-TYPE | 119 | 84 | 62 |
Figure S522. Get High-res Image Gene #59: 'Del Peak 30(14q24.1)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 2.75e-33 (Chi-square test), Q value = 2.2e-30
Table S523. Gene #59: 'Del Peak 30(14q24.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 30(14Q24.1) CNV | 113 | 21 | 24 | 48 | 90 | 5 | 7 |
| DEL PEAK 30(14Q24.1) WILD-TYPE | 62 | 118 | 193 | 106 | 134 | 42 | 8 |
Figure S523. Get High-res Image Gene #59: 'Del Peak 30(14q24.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2.53e-21 (Fisher's exact test), Q value = 1.8e-18
Table S524. Gene #59: 'Del Peak 30(14q24.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 30(14Q24.1) CNV | 48 | 136 | 124 |
| DEL PEAK 30(14Q24.1) WILD-TYPE | 243 | 110 | 310 |
Figure S524. Get High-res Image Gene #59: 'Del Peak 30(14q24.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 6.54e-22 (Fisher's exact test), Q value = 4.8e-19
Table S525. Gene #59: 'Del Peak 30(14q24.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 30(14Q24.1) CNV | 48 | 102 | 151 |
| DEL PEAK 30(14Q24.1) WILD-TYPE | 226 | 311 | 128 |
Figure S525. Get High-res Image Gene #59: 'Del Peak 30(14q24.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 4.97e-24 (Fisher's exact test), Q value = 3.8e-21
Table S526. Gene #59: 'Del Peak 30(14q24.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 30(14Q24.1) CNV | 128 | 61 | 112 |
| DEL PEAK 30(14Q24.1) WILD-TYPE | 97 | 315 | 253 |
Figure S526. Get High-res Image Gene #59: 'Del Peak 30(14q24.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2.66e-18 (Fisher's exact test), Q value = 1.8e-15
Table S527. Gene #59: 'Del Peak 30(14q24.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 30(14Q24.1) CNV | 66 | 34 | 111 |
| DEL PEAK 30(14Q24.1) WILD-TYPE | 184 | 176 | 85 |
Figure S527. Get High-res Image Gene #59: 'Del Peak 30(14q24.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1.14e-14 (Fisher's exact test), Q value = 7.1e-12
Table S528. Gene #59: 'Del Peak 30(14q24.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 30(14Q24.1) CNV | 28 | 81 | 102 |
| DEL PEAK 30(14Q24.1) WILD-TYPE | 132 | 230 | 83 |
Figure S528. Get High-res Image Gene #59: 'Del Peak 30(14q24.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 4.93e-07 (Chi-square test), Q value = 2e-04
Table S529. Gene #60: 'Del Peak 31(15q13.1)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 31(15Q13.1) CNV | 5 | 11 | 41 | 56 | 23 | 33 | 10 | 8 |
| DEL PEAK 31(15Q13.1) WILD-TYPE | 16 | 25 | 78 | 40 | 86 | 39 | 10 | 32 |
Figure S529. Get High-res Image Gene #60: 'Del Peak 31(15q13.1)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 1.62e-07 (Fisher's exact test), Q value = 6.8e-05
Table S530. Gene #60: 'Del Peak 31(15q13.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 31(15Q13.1) CNV | 25 | 68 | 94 |
| DEL PEAK 31(15Q13.1) WILD-TYPE | 97 | 57 | 172 |
Figure S530. Get High-res Image Gene #60: 'Del Peak 31(15q13.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1.24e-42 (Chi-square test), Q value = 1e-39
Table S531. Gene #60: 'Del Peak 31(15q13.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 31(15Q13.1) CNV | 46 | 74 | 40 | 165 | 11 |
| DEL PEAK 31(15Q13.1) WILD-TYPE | 328 | 158 | 39 | 87 | 37 |
Figure S531. Get High-res Image Gene #60: 'Del Peak 31(15q13.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.91e-14 (Chi-square test), Q value = 1.8e-11
Table S532. Gene #60: 'Del Peak 31(15q13.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 31(15Q13.1) CNV | 69 | 25 | 35 | 52 | 12 | 26 |
| DEL PEAK 31(15Q13.1) WILD-TYPE | 40 | 130 | 71 | 84 | 32 | 87 |
Figure S532. Get High-res Image Gene #60: 'Del Peak 31(15q13.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.000193 (Fisher's exact test), Q value = 0.049
Table S533. Gene #60: 'Del Peak 31(15q13.1)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| DEL PEAK 31(15Q13.1) CNV | 76 | 39 | 38 |
| DEL PEAK 31(15Q13.1) WILD-TYPE | 71 | 94 | 79 |
Figure S533. Get High-res Image Gene #60: 'Del Peak 31(15q13.1)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 2.32e-05 (Fisher's exact test), Q value = 0.0071
Table S534. Gene #60: 'Del Peak 31(15q13.1)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| DEL PEAK 31(15Q13.1) CNV | 54 | 30 | 69 |
| DEL PEAK 31(15Q13.1) WILD-TYPE | 107 | 80 | 57 |
Figure S534. Get High-res Image Gene #60: 'Del Peak 31(15q13.1)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 1.6e-21 (Chi-square test), Q value = 1.2e-18
Table S535. Gene #60: 'Del Peak 31(15q13.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 31(15Q13.1) CNV | 109 | 26 | 46 | 66 | 73 | 5 | 7 |
| DEL PEAK 31(15Q13.1) WILD-TYPE | 66 | 113 | 171 | 88 | 151 | 42 | 8 |
Figure S535. Get High-res Image Gene #60: 'Del Peak 31(15q13.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2.48e-20 (Fisher's exact test), Q value = 1.8e-17
Table S536. Gene #60: 'Del Peak 31(15q13.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 31(15Q13.1) CNV | 53 | 140 | 139 |
| DEL PEAK 31(15Q13.1) WILD-TYPE | 238 | 106 | 295 |
Figure S536. Get High-res Image Gene #60: 'Del Peak 31(15q13.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 8.06e-21 (Fisher's exact test), Q value = 5.8e-18
Table S537. Gene #60: 'Del Peak 31(15q13.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 31(15Q13.1) CNV | 45 | 130 | 152 |
| DEL PEAK 31(15Q13.1) WILD-TYPE | 229 | 283 | 127 |
Figure S537. Get High-res Image Gene #60: 'Del Peak 31(15q13.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.89e-21 (Fisher's exact test), Q value = 1.4e-18
Table S538. Gene #60: 'Del Peak 31(15q13.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 31(15Q13.1) CNV | 133 | 75 | 119 |
| DEL PEAK 31(15Q13.1) WILD-TYPE | 92 | 301 | 246 |
Figure S538. Get High-res Image Gene #60: 'Del Peak 31(15q13.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2.65e-17 (Fisher's exact test), Q value = 1.8e-14
Table S539. Gene #60: 'Del Peak 31(15q13.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 31(15Q13.1) CNV | 80 | 31 | 108 |
| DEL PEAK 31(15Q13.1) WILD-TYPE | 170 | 179 | 88 |
Figure S539. Get High-res Image Gene #60: 'Del Peak 31(15q13.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 7.67e-16 (Fisher's exact test), Q value = 5e-13
Table S540. Gene #60: 'Del Peak 31(15q13.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 31(15Q13.1) CNV | 26 | 88 | 105 |
| DEL PEAK 31(15Q13.1) WILD-TYPE | 134 | 223 | 80 |
Figure S540. Get High-res Image Gene #60: 'Del Peak 31(15q13.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 9.32e-17 (Chi-square test), Q value = 6.2e-14
Table S541. Gene #61: 'Del Peak 32(16q24.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 32(16Q24.3) CNV | 16 | 25 | 81 | 27 | 94 | 45 | 13 | 35 |
| DEL PEAK 32(16Q24.3) WILD-TYPE | 5 | 11 | 38 | 69 | 15 | 27 | 7 | 5 |
Figure S541. Get High-res Image Gene #61: 'Del Peak 32(16q24.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 2.67e-14 (Fisher's exact test), Q value = 1.7e-11
Table S542. Gene #61: 'Del Peak 32(16q24.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 32(16Q24.3) CNV | 96 | 45 | 195 |
| DEL PEAK 32(16Q24.3) WILD-TYPE | 26 | 80 | 71 |
Figure S542. Get High-res Image Gene #61: 'Del Peak 32(16q24.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1.26e-12 (Chi-square test), Q value = 7.4e-10
Table S543. Gene #61: 'Del Peak 32(16q24.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 32(16Q24.3) CNV | 268 | 150 | 64 | 114 | 37 |
| DEL PEAK 32(16Q24.3) WILD-TYPE | 106 | 82 | 15 | 138 | 11 |
Figure S543. Get High-res Image Gene #61: 'Del Peak 32(16q24.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3.67e-12 (Chi-square test), Q value = 2.1e-09
Table S544. Gene #61: 'Del Peak 32(16q24.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 32(16Q24.3) CNV | 42 | 127 | 79 | 81 | 23 | 64 |
| DEL PEAK 32(16Q24.3) WILD-TYPE | 67 | 28 | 27 | 55 | 21 | 49 |
Figure S544. Get High-res Image Gene #61: 'Del Peak 32(16q24.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.14e-09 (Fisher's exact test), Q value = 5.7e-07
Table S545. Gene #61: 'Del Peak 32(16q24.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| DEL PEAK 32(16Q24.3) CNV | 63 | 103 | 84 |
| DEL PEAK 32(16Q24.3) WILD-TYPE | 84 | 30 | 33 |
Figure S545. Get High-res Image Gene #61: 'Del Peak 32(16q24.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 3.45e-11 (Fisher's exact test), Q value = 1.9e-08
Table S546. Gene #61: 'Del Peak 32(16q24.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| DEL PEAK 32(16Q24.3) CNV | 119 | 83 | 48 |
| DEL PEAK 32(16Q24.3) WILD-TYPE | 42 | 27 | 78 |
Figure S546. Get High-res Image Gene #61: 'Del Peak 32(16q24.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 2.38e-29 (Chi-square test), Q value = 1.9e-26
Table S547. Gene #61: 'Del Peak 32(16q24.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 32(16Q24.3) CNV | 53 | 109 | 182 | 91 | 138 | 39 | 12 |
| DEL PEAK 32(16Q24.3) WILD-TYPE | 122 | 30 | 35 | 63 | 86 | 8 | 3 |
Figure S547. Get High-res Image Gene #61: 'Del Peak 32(16q24.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.35e-24 (Fisher's exact test), Q value = 1e-21
Table S548. Gene #61: 'Del Peak 32(16q24.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 32(16Q24.3) CNV | 225 | 90 | 309 |
| DEL PEAK 32(16Q24.3) WILD-TYPE | 66 | 156 | 125 |
Figure S548. Get High-res Image Gene #61: 'Del Peak 32(16q24.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.43e-18 (Fisher's exact test), Q value = 9.8e-16
Table S549. Gene #61: 'Del Peak 32(16q24.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 32(16Q24.3) CNV | 208 | 295 | 118 |
| DEL PEAK 32(16Q24.3) WILD-TYPE | 66 | 118 | 161 |
Figure S549. Get High-res Image Gene #61: 'Del Peak 32(16q24.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 4.01e-22 (Fisher's exact test), Q value = 3e-19
Table S550. Gene #61: 'Del Peak 32(16q24.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 32(16Q24.3) CNV | 88 | 298 | 235 |
| DEL PEAK 32(16Q24.3) WILD-TYPE | 137 | 78 | 130 |
Figure S550. Get High-res Image Gene #61: 'Del Peak 32(16q24.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2.6e-12 (Fisher's exact test), Q value = 1.5e-09
Table S551. Gene #61: 'Del Peak 32(16q24.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 32(16Q24.3) CNV | 172 | 159 | 83 |
| DEL PEAK 32(16Q24.3) WILD-TYPE | 78 | 51 | 113 |
Figure S551. Get High-res Image Gene #61: 'Del Peak 32(16q24.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 6.38e-13 (Fisher's exact test), Q value = 3.8e-10
Table S552. Gene #61: 'Del Peak 32(16q24.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 32(16Q24.3) CNV | 126 | 211 | 77 |
| DEL PEAK 32(16Q24.3) WILD-TYPE | 34 | 100 | 108 |
Figure S552. Get High-res Image Gene #61: 'Del Peak 32(16q24.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.95e-11 (Chi-square test), Q value = 1.1e-08
Table S553. Gene #62: 'Del Peak 33(17p12)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 33(17P12) CNV | 14 | 27 | 78 | 61 | 33 | 60 | 15 | 24 |
| DEL PEAK 33(17P12) WILD-TYPE | 7 | 9 | 41 | 35 | 76 | 12 | 5 | 16 |
Figure S553. Get High-res Image Gene #62: 'Del Peak 33(17p12)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 3.78e-27 (Chi-square test), Q value = 2.9e-24
Table S554. Gene #62: 'Del Peak 33(17p12)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 33(17P12) CNV | 147 | 180 | 43 | 195 | 26 |
| DEL PEAK 33(17P12) WILD-TYPE | 227 | 52 | 36 | 57 | 22 |
Figure S554. Get High-res Image Gene #62: 'Del Peak 33(17p12)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.69e-08 (Chi-square test), Q value = 7.6e-06
Table S555. Gene #62: 'Del Peak 33(17p12)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 33(17P12) CNV | 67 | 66 | 76 | 102 | 23 | 55 |
| DEL PEAK 33(17P12) WILD-TYPE | 42 | 89 | 30 | 34 | 21 | 58 |
Figure S555. Get High-res Image Gene #62: 'Del Peak 33(17p12)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 8.07e-05 (Fisher's exact test), Q value = 0.022
Table S556. Gene #62: 'Del Peak 33(17p12)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| DEL PEAK 33(17P12) CNV | 109 | 67 | 65 |
| DEL PEAK 33(17P12) WILD-TYPE | 38 | 66 | 52 |
Figure S556. Get High-res Image Gene #62: 'Del Peak 33(17p12)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 6.36e-18 (Chi-square test), Q value = 4.3e-15
Table S557. Gene #62: 'Del Peak 33(17p12)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 33(17P12) CNV | 107 | 73 | 82 | 126 | 159 | 25 | 12 |
| DEL PEAK 33(17P12) WILD-TYPE | 68 | 66 | 135 | 28 | 65 | 22 | 3 |
Figure S557. Get High-res Image Gene #62: 'Del Peak 33(17p12)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2.3e-06 (Fisher's exact test), Q value = 0.00082
Table S558. Gene #62: 'Del Peak 33(17p12)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 33(17P12) CNV | 138 | 245 | 199 |
| DEL PEAK 33(17P12) WILD-TYPE | 136 | 168 | 80 |
Figure S558. Get High-res Image Gene #62: 'Del Peak 33(17p12)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 9e-06 (Fisher's exact test), Q value = 0.0029
Table S559. Gene #62: 'Del Peak 33(17p12)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 33(17P12) CNV | 153 | 191 | 238 |
| DEL PEAK 33(17P12) WILD-TYPE | 72 | 185 | 127 |
Figure S559. Get High-res Image Gene #62: 'Del Peak 33(17p12)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.000325 (Fisher's exact test), Q value = 0.079
Table S560. Gene #62: 'Del Peak 33(17p12)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 33(17P12) CNV | 148 | 106 | 137 |
| DEL PEAK 33(17P12) WILD-TYPE | 102 | 104 | 59 |
Figure S560. Get High-res Image Gene #62: 'Del Peak 33(17p12)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1.97e-15 (Chi-square test), Q value = 1.3e-12
Table S561. Gene #63: 'Del Peak 34(17q21.31)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 34(17Q21.31) CNV | 7 | 17 | 28 | 51 | 13 | 50 | 9 | 15 |
| DEL PEAK 34(17Q21.31) WILD-TYPE | 14 | 19 | 91 | 45 | 96 | 22 | 11 | 25 |
Figure S561. Get High-res Image Gene #63: 'Del Peak 34(17q21.31)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 2.29e-07 (Fisher's exact test), Q value = 9.4e-05
Table S562. Gene #63: 'Del Peak 34(17q21.31)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 34(17Q21.31) CNV | 42 | 72 | 76 |
| DEL PEAK 34(17Q21.31) WILD-TYPE | 80 | 53 | 190 |
Figure S562. Get High-res Image Gene #63: 'Del Peak 34(17q21.31)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1.64e-26 (Chi-square test), Q value = 1.3e-23
Table S563. Gene #63: 'Del Peak 34(17q21.31)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 34(17Q21.31) CNV | 76 | 77 | 21 | 157 | 9 |
| DEL PEAK 34(17Q21.31) WILD-TYPE | 298 | 155 | 58 | 95 | 39 |
Figure S563. Get High-res Image Gene #63: 'Del Peak 34(17q21.31)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 8.14e-14 (Chi-square test), Q value = 5e-11
Table S564. Gene #63: 'Del Peak 34(17q21.31)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 34(17Q21.31) CNV | 66 | 19 | 37 | 42 | 11 | 35 |
| DEL PEAK 34(17Q21.31) WILD-TYPE | 43 | 136 | 69 | 94 | 33 | 78 |
Figure S564. Get High-res Image Gene #63: 'Del Peak 34(17q21.31)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.86e-11 (Fisher's exact test), Q value = 1e-08
Table S565. Gene #63: 'Del Peak 34(17q21.31)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| DEL PEAK 34(17Q21.31) CNV | 87 | 25 | 44 |
| DEL PEAK 34(17Q21.31) WILD-TYPE | 60 | 108 | 73 |
Figure S565. Get High-res Image Gene #63: 'Del Peak 34(17q21.31)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 3.12e-11 (Fisher's exact test), Q value = 1.7e-08
Table S566. Gene #63: 'Del Peak 34(17q21.31)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| DEL PEAK 34(17Q21.31) CNV | 42 | 33 | 81 |
| DEL PEAK 34(17Q21.31) WILD-TYPE | 119 | 77 | 45 |
Figure S566. Get High-res Image Gene #63: 'Del Peak 34(17q21.31)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 2.01e-35 (Chi-square test), Q value = 1.6e-32
Table S567. Gene #63: 'Del Peak 34(17q21.31)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 34(17Q21.31) CNV | 91 | 35 | 28 | 109 | 53 | 13 | 6 |
| DEL PEAK 34(17Q21.31) WILD-TYPE | 84 | 104 | 189 | 45 | 171 | 34 | 9 |
Figure S567. Get High-res Image Gene #63: 'Del Peak 34(17q21.31)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 8.06e-21 (Fisher's exact test), Q value = 5.8e-18
Table S568. Gene #63: 'Del Peak 34(17q21.31)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 34(17Q21.31) CNV | 75 | 148 | 112 |
| DEL PEAK 34(17Q21.31) WILD-TYPE | 216 | 98 | 322 |
Figure S568. Get High-res Image Gene #63: 'Del Peak 34(17q21.31)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 4.9e-15 (Fisher's exact test), Q value = 3.1e-12
Table S569. Gene #63: 'Del Peak 34(17q21.31)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 34(17Q21.31) CNV | 58 | 127 | 148 |
| DEL PEAK 34(17Q21.31) WILD-TYPE | 216 | 286 | 131 |
Figure S569. Get High-res Image Gene #63: 'Del Peak 34(17q21.31)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.5e-12 (Fisher's exact test), Q value = 8.7e-10
Table S570. Gene #63: 'Del Peak 34(17q21.31)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 34(17Q21.31) CNV | 118 | 86 | 129 |
| DEL PEAK 34(17Q21.31) WILD-TYPE | 107 | 290 | 236 |
Figure S570. Get High-res Image Gene #63: 'Del Peak 34(17q21.31)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.24e-12 (Fisher's exact test), Q value = 7.3e-10
Table S571. Gene #63: 'Del Peak 34(17q21.31)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 34(17Q21.31) CNV | 80 | 42 | 107 |
| DEL PEAK 34(17Q21.31) WILD-TYPE | 170 | 168 | 89 |
Figure S571. Get High-res Image Gene #63: 'Del Peak 34(17q21.31)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 3.07e-12 (Fisher's exact test), Q value = 1.8e-09
Table S572. Gene #63: 'Del Peak 34(17q21.31)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 34(17Q21.31) CNV | 39 | 85 | 105 |
| DEL PEAK 34(17Q21.31) WILD-TYPE | 121 | 226 | 80 |
Figure S572. Get High-res Image Gene #63: 'Del Peak 34(17q21.31)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.000183 (Chi-square test), Q value = 0.046
Table S573. Gene #64: 'Del Peak 35(18q23)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 35(18Q23) CNV | 6 | 13 | 38 | 37 | 18 | 37 | 6 | 9 |
| DEL PEAK 35(18Q23) WILD-TYPE | 15 | 23 | 81 | 59 | 91 | 35 | 14 | 31 |
Figure S573. Get High-res Image Gene #64: 'Del Peak 35(18q23)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 7.46e-16 (Chi-square test), Q value = 4.9e-13
Table S574. Gene #64: 'Del Peak 35(18q23)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 35(18Q23) CNV | 64 | 94 | 30 | 121 | 12 |
| DEL PEAK 35(18Q23) WILD-TYPE | 310 | 138 | 49 | 131 | 36 |
Figure S574. Get High-res Image Gene #64: 'Del Peak 35(18q23)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.54e-10 (Chi-square test), Q value = 1.3e-07
Table S575. Gene #64: 'Del Peak 35(18q23)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 35(18Q23) CNV | 45 | 27 | 55 | 58 | 10 | 23 |
| DEL PEAK 35(18Q23) WILD-TYPE | 64 | 128 | 51 | 78 | 34 | 90 |
Figure S575. Get High-res Image Gene #64: 'Del Peak 35(18q23)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 4.43e-12 (Chi-square test), Q value = 2.5e-09
Table S576. Gene #64: 'Del Peak 35(18q23)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 35(18Q23) CNV | 69 | 27 | 41 | 82 | 78 | 12 | 5 |
| DEL PEAK 35(18Q23) WILD-TYPE | 106 | 112 | 176 | 72 | 146 | 35 | 10 |
Figure S576. Get High-res Image Gene #64: 'Del Peak 35(18q23)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 7.5e-05 (Fisher's exact test), Q value = 0.021
Table S577. Gene #64: 'Del Peak 35(18q23)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 35(18Q23) CNV | 73 | 105 | 136 |
| DEL PEAK 35(18Q23) WILD-TYPE | 218 | 141 | 298 |
Figure S577. Get High-res Image Gene #64: 'Del Peak 35(18q23)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2.83e-05 (Fisher's exact test), Q value = 0.0084
Table S578. Gene #64: 'Del Peak 35(18q23)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 35(18Q23) CNV | 65 | 135 | 117 |
| DEL PEAK 35(18Q23) WILD-TYPE | 209 | 278 | 162 |
Figure S578. Get High-res Image Gene #64: 'Del Peak 35(18q23)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.01e-05 (Fisher's exact test), Q value = 0.0062
Table S579. Gene #64: 'Del Peak 35(18q23)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 35(18Q23) CNV | 98 | 95 | 124 |
| DEL PEAK 35(18Q23) WILD-TYPE | 127 | 281 | 241 |
Figure S579. Get High-res Image Gene #64: 'Del Peak 35(18q23)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 6.08e-07 (Fisher's exact test), Q value = 0.00024
Table S580. Gene #64: 'Del Peak 35(18q23)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 35(18Q23) CNV | 74 | 44 | 89 |
| DEL PEAK 35(18Q23) WILD-TYPE | 176 | 166 | 107 |
Figure S580. Get High-res Image Gene #64: 'Del Peak 35(18q23)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 5.5e-11 (Chi-square test), Q value = 2.9e-08
Table S581. Gene #65: 'Del Peak 36(19p13.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 36(19P13.3) CNV | 7 | 10 | 49 | 55 | 13 | 35 | 6 | 6 |
| DEL PEAK 36(19P13.3) WILD-TYPE | 14 | 26 | 70 | 41 | 96 | 37 | 14 | 34 |
Figure S581. Get High-res Image Gene #65: 'Del Peak 36(19p13.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 2.25e-08 (Fisher's exact test), Q value = 1e-05
Table S582. Gene #65: 'Del Peak 36(19p13.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 36(19P13.3) CNV | 21 | 66 | 94 |
| DEL PEAK 36(19P13.3) WILD-TYPE | 101 | 59 | 172 |
Figure S582. Get High-res Image Gene #65: 'Del Peak 36(19p13.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1.92e-48 (Chi-square test), Q value = 1.6e-45
Table S583. Gene #65: 'Del Peak 36(19p13.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 36(19P13.3) CNV | 31 | 116 | 11 | 151 | 16 |
| DEL PEAK 36(19P13.3) WILD-TYPE | 343 | 116 | 68 | 101 | 32 |
Figure S583. Get High-res Image Gene #65: 'Del Peak 36(19p13.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.44e-21 (Chi-square test), Q value = 1.1e-18
Table S584. Gene #65: 'Del Peak 36(19p13.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 36(19P13.3) CNV | 59 | 9 | 31 | 66 | 5 | 25 |
| DEL PEAK 36(19P13.3) WILD-TYPE | 50 | 146 | 75 | 70 | 39 | 88 |
Figure S584. Get High-res Image Gene #65: 'Del Peak 36(19p13.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 4.63e-06 (Fisher's exact test), Q value = 0.0016
Table S585. Gene #65: 'Del Peak 36(19p13.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| DEL PEAK 36(19P13.3) CNV | 78 | 38 | 32 |
| DEL PEAK 36(19P13.3) WILD-TYPE | 69 | 95 | 85 |
Figure S585. Get High-res Image Gene #65: 'Del Peak 36(19p13.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 2.02e-05 (Fisher's exact test), Q value = 0.0062
Table S586. Gene #65: 'Del Peak 36(19p13.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| DEL PEAK 36(19P13.3) CNV | 48 | 32 | 68 |
| DEL PEAK 36(19P13.3) WILD-TYPE | 113 | 78 | 58 |
Figure S586. Get High-res Image Gene #65: 'Del Peak 36(19p13.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 3.43e-27 (Chi-square test), Q value = 2.7e-24
Table S587. Gene #65: 'Del Peak 36(19p13.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 36(19P13.3) CNV | 97 | 22 | 21 | 66 | 96 | 9 | 9 |
| DEL PEAK 36(19P13.3) WILD-TYPE | 78 | 117 | 196 | 88 | 128 | 38 | 6 |
Figure S587. Get High-res Image Gene #65: 'Del Peak 36(19p13.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 3.27e-19 (Fisher's exact test), Q value = 2.3e-16
Table S588. Gene #65: 'Del Peak 36(19p13.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 36(19P13.3) CNV | 43 | 126 | 151 |
| DEL PEAK 36(19P13.3) WILD-TYPE | 248 | 120 | 283 |
Figure S588. Get High-res Image Gene #65: 'Del Peak 36(19p13.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.01e-25 (Fisher's exact test), Q value = 7.8e-23
Table S589. Gene #65: 'Del Peak 36(19p13.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 36(19P13.3) CNV | 33 | 132 | 150 |
| DEL PEAK 36(19P13.3) WILD-TYPE | 241 | 281 | 129 |
Figure S589. Get High-res Image Gene #65: 'Del Peak 36(19p13.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3.83e-28 (Fisher's exact test), Q value = 3e-25
Table S590. Gene #65: 'Del Peak 36(19p13.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 36(19P13.3) CNV | 128 | 53 | 134 |
| DEL PEAK 36(19P13.3) WILD-TYPE | 97 | 323 | 231 |
Figure S590. Get High-res Image Gene #65: 'Del Peak 36(19p13.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 5.14e-17 (Fisher's exact test), Q value = 3.4e-14
Table S591. Gene #65: 'Del Peak 36(19p13.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 36(19P13.3) CNV | 70 | 33 | 108 |
| DEL PEAK 36(19P13.3) WILD-TYPE | 180 | 177 | 88 |
Figure S591. Get High-res Image Gene #65: 'Del Peak 36(19p13.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 7.53e-12 (Fisher's exact test), Q value = 4.2e-09
Table S592. Gene #65: 'Del Peak 36(19p13.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 36(19P13.3) CNV | 32 | 81 | 98 |
| DEL PEAK 36(19P13.3) WILD-TYPE | 128 | 230 | 87 |
Figure S592. Get High-res Image Gene #65: 'Del Peak 36(19p13.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 8.89e-07 (Chi-square test), Q value = 0.00034
Table S593. Gene #66: 'Del Peak 37(19q13.32)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 37(19Q13.32) CNV | 4 | 7 | 22 | 24 | 7 | 29 | 1 | 3 |
| DEL PEAK 37(19Q13.32) WILD-TYPE | 17 | 29 | 97 | 72 | 102 | 43 | 19 | 37 |
Figure S593. Get High-res Image Gene #66: 'Del Peak 37(19q13.32)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 1.37e-05 (Fisher's exact test), Q value = 0.0043
Table S594. Gene #66: 'Del Peak 37(19q13.32)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 37(19Q13.32) CNV | 8 | 36 | 53 |
| DEL PEAK 37(19Q13.32) WILD-TYPE | 114 | 89 | 213 |
Figure S594. Get High-res Image Gene #66: 'Del Peak 37(19q13.32)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 2.29e-21 (Chi-square test), Q value = 1.7e-18
Table S595. Gene #66: 'Del Peak 37(19q13.32)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 37(19Q13.32) CNV | 22 | 72 | 5 | 84 | 10 |
| DEL PEAK 37(19Q13.32) WILD-TYPE | 352 | 160 | 74 | 168 | 38 |
Figure S595. Get High-res Image Gene #66: 'Del Peak 37(19q13.32)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 6.73e-11 (Chi-square test), Q value = 3.5e-08
Table S596. Gene #66: 'Del Peak 37(19q13.32)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 37(19Q13.32) CNV | 38 | 6 | 22 | 42 | 4 | 17 |
| DEL PEAK 37(19Q13.32) WILD-TYPE | 71 | 149 | 84 | 94 | 40 | 96 |
Figure S596. Get High-res Image Gene #66: 'Del Peak 37(19q13.32)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.000783 (Fisher's exact test), Q value = 0.18
Table S597. Gene #66: 'Del Peak 37(19q13.32)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 147 | 133 | 117 |
| DEL PEAK 37(19Q13.32) CNV | 44 | 20 | 15 |
| DEL PEAK 37(19Q13.32) WILD-TYPE | 103 | 113 | 102 |
Figure S597. Get High-res Image Gene #66: 'Del Peak 37(19q13.32)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 4.95e-05 (Fisher's exact test), Q value = 0.014
Table S598. Gene #66: 'Del Peak 37(19q13.32)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 161 | 110 | 126 |
| DEL PEAK 37(19Q13.32) CNV | 27 | 11 | 41 |
| DEL PEAK 37(19Q13.32) WILD-TYPE | 134 | 99 | 85 |
Figure S598. Get High-res Image Gene #66: 'Del Peak 37(19q13.32)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 6.95e-15 (Chi-square test), Q value = 4.4e-12
Table S599. Gene #66: 'Del Peak 37(19q13.32)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 37(19Q13.32) CNV | 52 | 9 | 17 | 55 | 54 | 4 | 1 |
| DEL PEAK 37(19Q13.32) WILD-TYPE | 123 | 130 | 200 | 99 | 170 | 43 | 14 |
Figure S599. Get High-res Image Gene #66: 'Del Peak 37(19q13.32)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.03e-12 (Fisher's exact test), Q value = 6.1e-10
Table S600. Gene #66: 'Del Peak 37(19q13.32)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 37(19Q13.32) CNV | 23 | 81 | 88 |
| DEL PEAK 37(19Q13.32) WILD-TYPE | 268 | 165 | 346 |
Figure S600. Get High-res Image Gene #66: 'Del Peak 37(19q13.32)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2.97e-14 (Fisher's exact test), Q value = 1.8e-11
Table S601. Gene #66: 'Del Peak 37(19q13.32)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 37(19Q13.32) CNV | 16 | 84 | 86 |
| DEL PEAK 37(19Q13.32) WILD-TYPE | 258 | 329 | 193 |
Figure S601. Get High-res Image Gene #66: 'Del Peak 37(19q13.32)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 8.49e-16 (Fisher's exact test), Q value = 5.5e-13
Table S602. Gene #66: 'Del Peak 37(19q13.32)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 37(19Q13.32) CNV | 68 | 26 | 92 |
| DEL PEAK 37(19Q13.32) WILD-TYPE | 157 | 350 | 273 |
Figure S602. Get High-res Image Gene #66: 'Del Peak 37(19q13.32)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 5.55e-12 (Fisher's exact test), Q value = 3.1e-09
Table S603. Gene #66: 'Del Peak 37(19q13.32)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 37(19Q13.32) CNV | 51 | 13 | 66 |
| DEL PEAK 37(19Q13.32) WILD-TYPE | 199 | 197 | 130 |
Figure S603. Get High-res Image Gene #66: 'Del Peak 37(19q13.32)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 7.55e-10 (Fisher's exact test), Q value = 3.8e-07
Table S604. Gene #66: 'Del Peak 37(19q13.32)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 37(19Q13.32) CNV | 12 | 54 | 64 |
| DEL PEAK 37(19Q13.32) WILD-TYPE | 148 | 257 | 121 |
Figure S604. Get High-res Image Gene #66: 'Del Peak 37(19q13.32)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 4.49e-06 (Chi-square test), Q value = 0.0015
Table S605. Gene #67: 'Del Peak 38(20p13)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 38(20P13) CNV | 1 | 3 | 28 | 24 | 3 | 16 | 3 | 1 |
| DEL PEAK 38(20P13) WILD-TYPE | 20 | 33 | 91 | 72 | 106 | 56 | 17 | 39 |
Figure S605. Get High-res Image Gene #67: 'Del Peak 38(20p13)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 6.53e-05 (Fisher's exact test), Q value = 0.018
Table S606. Gene #67: 'Del Peak 38(20p13)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 122 | 125 | 266 |
| DEL PEAK 38(20P13) CNV | 7 | 32 | 40 |
| DEL PEAK 38(20P13) WILD-TYPE | 115 | 93 | 226 |
Figure S606. Get High-res Image Gene #67: 'Del Peak 38(20p13)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 2.38e-16 (Chi-square test), Q value = 1.6e-13
Table S607. Gene #67: 'Del Peak 38(20p13)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 38(20P13) CNV | 15 | 40 | 6 | 71 | 12 |
| DEL PEAK 38(20P13) WILD-TYPE | 359 | 192 | 73 | 181 | 36 |
Figure S607. Get High-res Image Gene #67: 'Del Peak 38(20p13)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 4.52e-13 (Chi-square test), Q value = 2.7e-10
Table S608. Gene #67: 'Del Peak 38(20p13)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 38(20P13) CNV | 39 | 5 | 13 | 22 | 4 | 7 |
| DEL PEAK 38(20P13) WILD-TYPE | 70 | 150 | 93 | 114 | 40 | 106 |
Figure S608. Get High-res Image Gene #67: 'Del Peak 38(20p13)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 3.18e-15 (Chi-square test), Q value = 2e-12
Table S609. Gene #67: 'Del Peak 38(20p13)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 38(20P13) CNV | 52 | 7 | 7 | 27 | 48 | 1 | 1 |
| DEL PEAK 38(20P13) WILD-TYPE | 123 | 132 | 210 | 127 | 176 | 46 | 14 |
Figure S609. Get High-res Image Gene #67: 'Del Peak 38(20p13)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.07e-10 (Fisher's exact test), Q value = 5.5e-08
Table S610. Gene #67: 'Del Peak 38(20p13)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 291 | 246 | 434 |
| DEL PEAK 38(20P13) CNV | 20 | 68 | 55 |
| DEL PEAK 38(20P13) WILD-TYPE | 271 | 178 | 379 |
Figure S610. Get High-res Image Gene #67: 'Del Peak 38(20p13)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 8.71e-15 (Fisher's exact test), Q value = 5.5e-12
Table S611. Gene #67: 'Del Peak 38(20p13)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 274 | 413 | 279 |
| DEL PEAK 38(20P13) CNV | 12 | 47 | 77 |
| DEL PEAK 38(20P13) WILD-TYPE | 262 | 366 | 202 |
Figure S611. Get High-res Image Gene #67: 'Del Peak 38(20p13)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.36e-17 (Fisher's exact test), Q value = 9.2e-15
Table S612. Gene #67: 'Del Peak 38(20p13)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 225 | 376 | 365 |
| DEL PEAK 38(20P13) CNV | 69 | 17 | 50 |
| DEL PEAK 38(20P13) WILD-TYPE | 156 | 359 | 315 |
Figure S612. Get High-res Image Gene #67: 'Del Peak 38(20p13)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.59e-10 (Fisher's exact test), Q value = 8.3e-08
Table S613. Gene #67: 'Del Peak 38(20p13)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 250 | 210 | 196 |
| DEL PEAK 38(20P13) CNV | 27 | 11 | 55 |
| DEL PEAK 38(20P13) WILD-TYPE | 223 | 199 | 141 |
Figure S613. Get High-res Image Gene #67: 'Del Peak 38(20p13)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 5.8e-10 (Fisher's exact test), Q value = 2.9e-07
Table S614. Gene #67: 'Del Peak 38(20p13)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 160 | 311 | 185 |
| DEL PEAK 38(20P13) CNV | 9 | 31 | 53 |
| DEL PEAK 38(20P13) WILD-TYPE | 151 | 280 | 132 |
Figure S614. Get High-res Image Gene #67: 'Del Peak 38(20p13)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.000341 (Chi-square test), Q value = 0.082
Table S615. Gene #68: 'Del Peak 39(21q11.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
|---|---|---|---|---|---|---|---|---|
| ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
| DEL PEAK 39(21Q11.2) CNV | 3 | 11 | 37 | 15 | 11 | 22 | 3 | 4 |
| DEL PEAK 39(21Q11.2) WILD-TYPE | 18 | 25 | 82 | 81 | 98 | 50 | 17 | 36 |
Figure S615. Get High-res Image Gene #68: 'Del Peak 39(21q11.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 4.09e-12 (Chi-square test), Q value = 2.3e-09
Table S616. Gene #68: 'Del Peak 39(21q11.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 39(21Q11.2) CNV | 29 | 73 | 16 | 63 | 11 |
| DEL PEAK 39(21Q11.2) WILD-TYPE | 345 | 159 | 63 | 189 | 37 |
Figure S616. Get High-res Image Gene #68: 'Del Peak 39(21q11.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.32e-05 (Chi-square test), Q value = 0.0041
Table S617. Gene #68: 'Del Peak 39(21q11.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 39(21Q11.2) CNV | 16 | 19 | 24 | 45 | 7 | 12 |
| DEL PEAK 39(21Q11.2) WILD-TYPE | 93 | 136 | 82 | 91 | 37 | 101 |
Figure S617. Get High-res Image Gene #68: 'Del Peak 39(21q11.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 5.67e-06 (Chi-square test), Q value = 0.0019
Table S618. Gene #68: 'Del Peak 39(21q11.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 175 | 139 | 217 | 154 | 224 | 47 | 15 |
| DEL PEAK 39(21Q11.2) CNV | 28 | 19 | 27 | 42 | 65 | 4 | 2 |
| DEL PEAK 39(21Q11.2) WILD-TYPE | 147 | 120 | 190 | 112 | 159 | 43 | 13 |
Figure S618. Get High-res Image Gene #68: 'Del Peak 39(21q11.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 3.04e-06 (Chi-square test), Q value = 0.0011
Table S619. Gene #69: 'Del Peak 40(22q11.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 40(22Q11.1) CNV | 123 | 114 | 49 | 110 | 22 |
| DEL PEAK 40(22Q11.1) WILD-TYPE | 251 | 118 | 30 | 142 | 26 |
Figure S619. Get High-res Image Gene #69: 'Del Peak 40(22q11.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.000449 (Chi-square test), Q value = 0.11
Table S620. Gene #69: 'Del Peak 40(22q11.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 109 | 155 | 106 | 136 | 44 | 113 |
| DEL PEAK 40(22Q11.1) CNV | 46 | 55 | 52 | 75 | 11 | 39 |
| DEL PEAK 40(22Q11.1) WILD-TYPE | 63 | 100 | 54 | 61 | 33 | 74 |
Figure S620. Get High-res Image Gene #69: 'Del Peak 40(22q11.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2.21e-07 (Chi-square test), Q value = 9.1e-05
Table S621. Gene #70: 'Del Peak 41(22q13.31)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 374 | 232 | 79 | 252 | 48 |
| DEL PEAK 41(22Q13.31) CNV | 135 | 124 | 54 | 115 | 25 |
| DEL PEAK 41(22Q13.31) WILD-TYPE | 239 | 108 | 25 | 137 | 23 |
Figure S621. Get High-res Image Gene #70: 'Del Peak 41(22q13.31)' versus Molecular Subtype #3: 'CN_CNMF'
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Copy number data file = All Lesions File (all_lesions.conf_##.txt, where ## is the confidence level). The all lesions file is from GISTIC pipeline and summarizes the results from the GISTIC run. It contains data about the significant regions of amplification and deletion as well as which samples are amplified or deleted in each of these regions. The identified regions are listed down the first column, and the samples are listed across the first row, starting in column 10.
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Molecular subtype file = BRCA-TP.transferedmergedcluster.txt
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Number of patients = 985
-
Number of copy number variation regions = 70
-
Number of molecular subtypes = 12
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Exclude regions that fewer than K tumors have alterations, K = 3
For multi-class clinical features (nominal or ordinal), Chi-square tests (Greenwood and Nikulin 1996) were used to estimate the P values using the 'chisq.test' function in R
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.