Loading MAF file: /xchip/cga/gdac-prod/tcga-gdac/jobResults/MergeMutSigRunResults/CESC-TP/4502869/CESC-TP.final_analysis_set.maf
Sorting MAF data ...
Processing MAF data ...
Loading chr01: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr01.txt
100 mutations processed.
200 mutations processed.
300 mutations processed.
400 mutations processed.
500 mutations processed.
600 mutations processed.
700 mutations processed.
800 mutations processed.
900 mutations processed.
1000 mutations processed.
Loading chr02: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr02.txt
1100 mutations processed.
1200 mutations processed.
1300 mutations processed.
1400 mutations processed.
1500 mutations processed.
1600 mutations processed.
Loading chr03: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr03.txt
1700 mutations processed.
1800 mutations processed.
1900 mutations processed.
2000 mutations processed.
2100 mutations processed.
Loading chr04: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr04.txt
2200 mutations processed.
2300 mutations processed.
2400 mutations processed.
2500 mutations processed.
Loading chr05: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr05.txt
2600 mutations processed.
2700 mutations processed.
2800 mutations processed.
Loading chr06: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr06.txt
2900 mutations processed.
3000 mutations processed.
3100 mutations processed.
3200 mutations processed.
3300 mutations processed.
3400 mutations processed.
Loading chr07: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr07.txt
3500 mutations processed.
3600 mutations processed.
3700 mutations processed.
3800 mutations processed.
Loading chr08: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr08.txt
3900 mutations processed.
4000 mutations processed.
Loading chr09: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr09.txt
4100 mutations processed.
4200 mutations processed.
4300 mutations processed.
Loading chr10: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr10.txt
4400 mutations processed.
4500 mutations processed.
4600 mutations processed.
Loading chr11: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr11.txt
4700 mutations processed.
4800 mutations processed.
4900 mutations processed.
5000 mutations processed.
5100 mutations processed.
5200 mutations processed.
Loading chr12: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr12.txt
5300 mutations processed.
5400 mutations processed.
5500 mutations processed.
5600 mutations processed.
5700 mutations processed.
Loading chr13: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr13.txt
5800 mutations processed.
Loading chr14: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr14.txt
5900 mutations processed.
6000 mutations processed.
6100 mutations processed.
Loading chr15: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr15.txt
6200 mutations processed.
6300 mutations processed.
Loading chr16: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr16.txt
6400 mutations processed.
6500 mutations processed.
6600 mutations processed.
6700 mutations processed.
Loading chr17: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr17.txt
6800 mutations processed.
6900 mutations processed.
7000 mutations processed.
7100 mutations processed.
7200 mutations processed.
Loading chr18: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr18.txt
7300 mutations processed.
7400 mutations processed.
Loading chr19: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr19.txt
7500 mutations processed.
7600 mutations processed.
7700 mutations processed.
7800 mutations processed.
7900 mutations processed.
8000 mutations processed.
8100 mutations processed.
Loading chr20: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr20.txt
8200 mutations processed.
8300 mutations processed.
Loading chr21: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr21.txt
8400 mutations processed.
Loading chr22: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr22.txt
8500 mutations processed.
8600 mutations processed.
Loading chrX: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chrX.txt
8700 mutations processed.
8800 mutations processed.
8900 mutations processed.
9000 mutations processed.
9100 mutations processed.
9170 mutations processed.
