
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.4.4139/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.4.4139/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/475196/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering_new/ESCA-TP/4428472/ESCA-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=ESCA-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=ESCA-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=63, in cluster file=63, common to both=63
[1] 65 63
[1] "Amp Peak  1(1p34.2)"
[1] 3
      AMP PEAK  1(1P34.2) CNV AMP PEAK  1(1P34.2) WILD-TYPE 
                           13                            50 
      AMP PEAK  1(1P34.2) CNV AMP PEAK  1(1P34.2) WILD-TYPE 
                           13                            50 
[1] "Amp Peak  2(1q42.3)"
[1] 3
      AMP PEAK  2(1Q42.3) CNV AMP PEAK  2(1Q42.3) WILD-TYPE 
                           33                            30 
      AMP PEAK  2(1Q42.3) CNV AMP PEAK  2(1Q42.3) WILD-TYPE 
                           33                            30 
[1] "Amp Peak  3(2q14.2)"
[1] 3
      AMP PEAK  3(2Q14.2) CNV AMP PEAK  3(2Q14.2) WILD-TYPE 
                           20                            43 
      AMP PEAK  3(2Q14.2) CNV AMP PEAK  3(2Q14.2) WILD-TYPE 
                           20                            43 
[1] "Amp Peak  4(3q26.2)"
[1] 3
      AMP PEAK  4(3Q26.2) CNV AMP PEAK  4(3Q26.2) WILD-TYPE 
                           48                            15 
      AMP PEAK  4(3Q26.2) CNV AMP PEAK  4(3Q26.2) WILD-TYPE 
                           48                            15 
[1] "Amp Peak  5(5p15.33)"
[1] 3
      AMP PEAK  5(5P15.33) CNV AMP PEAK  5(5P15.33) WILD-TYPE 
                            39                             24 
      AMP PEAK  5(5P15.33) CNV AMP PEAK  5(5P15.33) WILD-TYPE 
                            39                             24 
[1] "Amp Peak  6(6p21.1)"
[1] 3
      AMP PEAK  6(6P21.1) CNV AMP PEAK  6(6P21.1) WILD-TYPE 
                           17                            46 
      AMP PEAK  6(6P21.1) CNV AMP PEAK  6(6P21.1) WILD-TYPE 
                           17                            46 
[1] "Amp Peak  7(6q12)"
[1] 3
      AMP PEAK  7(6Q12) CNV AMP PEAK  7(6Q12) WILD-TYPE 
                         15                          48 
      AMP PEAK  7(6Q12) CNV AMP PEAK  7(6Q12) WILD-TYPE 
                         15                          48 
[1] "Amp Peak  8(7p11.2)"
[1] 3
      AMP PEAK  8(7P11.2) CNV AMP PEAK  8(7P11.2) WILD-TYPE 
                           44                            19 
      AMP PEAK  8(7P11.2) CNV AMP PEAK  8(7P11.2) WILD-TYPE 
                           44                            19 
[1] "Amp Peak  9(7q21.2)"
[1] 3
      AMP PEAK  9(7Q21.2) CNV AMP PEAK  9(7Q21.2) WILD-TYPE 
                           42                            21 
      AMP PEAK  9(7Q21.2) CNV AMP PEAK  9(7Q21.2) WILD-TYPE 
                           42                            21 
[1] "Amp Peak 10(8p11.21)"
[1] 3
      AMP PEAK 10(8P11.21) CNV AMP PEAK 10(8P11.21) WILD-TYPE 
                            32                             31 
      AMP PEAK 10(8P11.21) CNV AMP PEAK 10(8P11.21) WILD-TYPE 
                            32                             31 
[1] "Amp Peak 11(8q24.21)"
[1] 3
      AMP PEAK 11(8Q24.21) CNV AMP PEAK 11(8Q24.21) WILD-TYPE 
                            53                             10 
      AMP PEAK 11(8Q24.21) CNV AMP PEAK 11(8Q24.21) WILD-TYPE 
                            53                             10 
[1] "Amp Peak 12(10p11.21)"
[1] 3
      AMP PEAK 12(10P11.21) CNV AMP PEAK 12(10P11.21) WILD-TYPE 
                             15                              48 
      AMP PEAK 12(10P11.21) CNV AMP PEAK 12(10P11.21) WILD-TYPE 
                             15                              48 
[1] "Amp Peak 13(11p13)"
[1] 3
      AMP PEAK 13(11P13) CNV AMP PEAK 13(11P13) WILD-TYPE 
                          18                           45 
      AMP PEAK 13(11P13) CNV AMP PEAK 13(11P13) WILD-TYPE 
                          18                           45 
[1] "Amp Peak 14(11q13.3)"
[1] 3
      AMP PEAK 14(11Q13.3) CNV AMP PEAK 14(11Q13.3) WILD-TYPE 
                            39                             24 
      AMP PEAK 14(11Q13.3) CNV AMP PEAK 14(11Q13.3) WILD-TYPE 
                            39                             24 
[1] "Amp Peak 15(12p13.33)"
[1] 3
      AMP PEAK 15(12P13.33) CNV AMP PEAK 15(12P13.33) WILD-TYPE 
                             31                              32 
      AMP PEAK 15(12P13.33) CNV AMP PEAK 15(12P13.33) WILD-TYPE 
                             31                              32 
[1] "Amp Peak 16(12p12.1)"
[1] 3
      AMP PEAK 16(12P12.1) CNV AMP PEAK 16(12P12.1) WILD-TYPE 
                            35                             28 
      AMP PEAK 16(12P12.1) CNV AMP PEAK 16(12P12.1) WILD-TYPE 
                            35                             28 
[1] "Amp Peak 17(14q22.1)"
[1] 3
      AMP PEAK 17(14Q22.1) CNV AMP PEAK 17(14Q22.1) WILD-TYPE 
                            22                             41 
      AMP PEAK 17(14Q22.1) CNV AMP PEAK 17(14Q22.1) WILD-TYPE 
                            22                             41 
[1] "Amp Peak 18(17q12)"
[1] 3
      AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE 
                          23                           40 
      AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE 
                          23                           40 
[1] "Amp Peak 19(17q24.3)"
[1] 3
      AMP PEAK 19(17Q24.3) CNV AMP PEAK 19(17Q24.3) WILD-TYPE 
                            28                             35 
      AMP PEAK 19(17Q24.3) CNV AMP PEAK 19(17Q24.3) WILD-TYPE 
                            28                             35 
[1] "Amp Peak 20(18p11.32)"
[1] 3
      AMP PEAK 20(18P11.32) CNV AMP PEAK 20(18P11.32) WILD-TYPE 
                             23                              40 
      AMP PEAK 20(18P11.32) CNV AMP PEAK 20(18P11.32) WILD-TYPE 
                             23                              40 
[1] "Amp Peak 21(18q11.2)"
[1] 3
      AMP PEAK 21(18Q11.2) CNV AMP PEAK 21(18Q11.2) WILD-TYPE 
                            16                             47 
      AMP PEAK 21(18Q11.2) CNV AMP PEAK 21(18Q11.2) WILD-TYPE 
                            16                             47 
[1] "Amp Peak 22(19p13.2)"
[1] 3
      AMP PEAK 22(19P13.2) CNV AMP PEAK 22(19P13.2) WILD-TYPE 
                            14                             49 
      AMP PEAK 22(19P13.2) CNV AMP PEAK 22(19P13.2) WILD-TYPE 
                            14                             49 
[1] "Amp Peak 23(19p13.11)"
[1] 3
      AMP PEAK 23(19P13.11) CNV AMP PEAK 23(19P13.11) WILD-TYPE 
                             16                              47 
      AMP PEAK 23(19P13.11) CNV AMP PEAK 23(19P13.11) WILD-TYPE 
                             16                              47 
[1] "Amp Peak 24(19q12)"
[1] 3
      AMP PEAK 24(19Q12) CNV AMP PEAK 24(19Q12) WILD-TYPE 
                          21                           42 
      AMP PEAK 24(19Q12) CNV AMP PEAK 24(19Q12) WILD-TYPE 
                          21                           42 
[1] "Amp Peak 25(Xp11.4)"
[1] 3
      AMP PEAK 25(XP11.4) CNV AMP PEAK 25(XP11.4) WILD-TYPE 
                           12                            51 
      AMP PEAK 25(XP11.4) CNV AMP PEAK 25(XP11.4) WILD-TYPE 
                           12                            51 
[1] "Del Peak  1(1p36.13)"
[1] 3
      DEL PEAK  1(1P36.13) CNV DEL PEAK  1(1P36.13) WILD-TYPE 
                            19                             44 
      DEL PEAK  1(1P36.13) CNV DEL PEAK  1(1P36.13) WILD-TYPE 
                            19                             44 
[1] "Del Peak  2(1p13.2)"
[1] 3
      DEL PEAK  2(1P13.2) CNV DEL PEAK  2(1P13.2) WILD-TYPE 
                           23                            40 
      DEL PEAK  2(1P13.2) CNV DEL PEAK  2(1P13.2) WILD-TYPE 
                           23                            40 
[1] "Del Peak  3(1q44)"
[1] 3
      DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE 
                          8                          55 
      DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE 
                          8                          55 
[1] "Del Peak  4(2q22.1)"
[1] 3
      DEL PEAK  4(2Q22.1) CNV DEL PEAK  4(2Q22.1) WILD-TYPE 
                           16                            47 
      DEL PEAK  4(2Q22.1) CNV DEL PEAK  4(2Q22.1) WILD-TYPE 
                           16                            47 
[1] "Del Peak  5(2q34)"
[1] 3
      DEL PEAK  5(2Q34) CNV DEL PEAK  5(2Q34) WILD-TYPE 
                         16                          47 
      DEL PEAK  5(2Q34) CNV DEL PEAK  5(2Q34) WILD-TYPE 
                         16                          47 
[1] "Del Peak  6(3p26.1)"
[1] 3
      DEL PEAK  6(3P26.1) CNV DEL PEAK  6(3P26.1) WILD-TYPE 
                           45                            18 
      DEL PEAK  6(3P26.1) CNV DEL PEAK  6(3P26.1) WILD-TYPE 
                           45                            18 
[1] "Del Peak  7(3p14.3)"
[1] 3
      DEL PEAK  7(3P14.3) CNV DEL PEAK  7(3P14.3) WILD-TYPE 
                           50                            13 
      DEL PEAK  7(3P14.3) CNV DEL PEAK  7(3P14.3) WILD-TYPE 
                           50                            13 
[1] "Del Peak  8(3p14.2)"
[1] 3
      DEL PEAK  8(3P14.2) CNV DEL PEAK  8(3P14.2) WILD-TYPE 
                           51                            12 
      DEL PEAK  8(3P14.2) CNV DEL PEAK  8(3P14.2) WILD-TYPE 
                           51                            12 
[1] "Del Peak  9(3q11.1)"
[1] 3
      DEL PEAK  9(3Q11.1) CNV DEL PEAK  9(3Q11.1) WILD-TYPE 
                           10                            53 
      DEL PEAK  9(3Q11.1) CNV DEL PEAK  9(3Q11.1) WILD-TYPE 
                           10                            53 
[1] "Del Peak 10(3q26.31)"
[1] 3
      DEL PEAK 10(3Q26.31) CNV DEL PEAK 10(3Q26.31) WILD-TYPE 
                             6                             57 
      DEL PEAK 10(3Q26.31) CNV DEL PEAK 10(3Q26.31) WILD-TYPE 
                             6                             57 
[1] "Del Peak 11(4p15.2)"
[1] 3
      DEL PEAK 11(4P15.2) CNV DEL PEAK 11(4P15.2) WILD-TYPE 
                           35                            28 
      DEL PEAK 11(4P15.2) CNV DEL PEAK 11(4P15.2) WILD-TYPE 
                           35                            28 
[1] "Del Peak 12(4q22.1)"
[1] 3
      DEL PEAK 12(4Q22.1) CNV DEL PEAK 12(4Q22.1) WILD-TYPE 
                           31                            32 
      DEL PEAK 12(4Q22.1) CNV DEL PEAK 12(4Q22.1) WILD-TYPE 
                           31                            32 
[1] "Del Peak 13(5q11.2)"
[1] 3
      DEL PEAK 13(5Q11.2) CNV DEL PEAK 13(5Q11.2) WILD-TYPE 
                           37                            26 
      DEL PEAK 13(5Q11.2) CNV DEL PEAK 13(5Q11.2) WILD-TYPE 
                           37                            26 
[1] "Del Peak 14(5q12.3)"
[1] 3
      DEL PEAK 14(5Q12.3) CNV DEL PEAK 14(5Q12.3) WILD-TYPE 
                           39                            24 
      DEL PEAK 14(5Q12.3) CNV DEL PEAK 14(5Q12.3) WILD-TYPE 
                           39                            24 
[1] "Del Peak 15(6p25.3)"
[1] 3
      DEL PEAK 15(6P25.3) CNV DEL PEAK 15(6P25.3) WILD-TYPE 
                           24                            39 
      DEL PEAK 15(6P25.3) CNV DEL PEAK 15(6P25.3) WILD-TYPE 
                           24                            39 
[1] "Del Peak 16(6q14.2)"
[1] 3
      DEL PEAK 16(6Q14.2) CNV DEL PEAK 16(6Q14.2) WILD-TYPE 
                           16                            47 
      DEL PEAK 16(6Q14.2) CNV DEL PEAK 16(6Q14.2) WILD-TYPE 
                           16                            47 
[1] "Del Peak 17(7q31.1)"
[1] 3
      DEL PEAK 17(7Q31.1) CNV DEL PEAK 17(7Q31.1) WILD-TYPE 
                           21                            42 
      DEL PEAK 17(7Q31.1) CNV DEL PEAK 17(7Q31.1) WILD-TYPE 
                           21                            42 
[1] "Del Peak 18(7q36.2)"
[1] 3
      DEL PEAK 18(7Q36.2) CNV DEL PEAK 18(7Q36.2) WILD-TYPE 
                           27                            36 
      DEL PEAK 18(7Q36.2) CNV DEL PEAK 18(7Q36.2) WILD-TYPE 
                           27                            36 
[1] "Del Peak 19(8p23.2)"
[1] 3
      DEL PEAK 19(8P23.2) CNV DEL PEAK 19(8P23.2) WILD-TYPE 
                           29                            34 
      DEL PEAK 19(8P23.2) CNV DEL PEAK 19(8P23.2) WILD-TYPE 
                           29                            34 
[1] "Del Peak 20(9p21.3)"
[1] 3
      DEL PEAK 20(9P21.3) CNV DEL PEAK 20(9P21.3) WILD-TYPE 
                           52                            11 
      DEL PEAK 20(9P21.3) CNV DEL PEAK 20(9P21.3) WILD-TYPE 
                           52                            11 
[1] "Del Peak 21(10p11.21)"
[1] 3
      DEL PEAK 21(10P11.21) CNV DEL PEAK 21(10P11.21) WILD-TYPE 
                             19                              44 
      DEL PEAK 21(10P11.21) CNV DEL PEAK 21(10P11.21) WILD-TYPE 
                             19                              44 
[1] "Del Peak 22(10q23.31)"
[1] 3
      DEL PEAK 22(10Q23.31) CNV DEL PEAK 22(10Q23.31) WILD-TYPE 
                             30                              33 
      DEL PEAK 22(10Q23.31) CNV DEL PEAK 22(10Q23.31) WILD-TYPE 
                             30                              33 
[1] "Del Peak 23(11p15.4)"
[1] 3
      DEL PEAK 23(11P15.4) CNV DEL PEAK 23(11P15.4) WILD-TYPE 
                            28                             35 
      DEL PEAK 23(11P15.4) CNV DEL PEAK 23(11P15.4) WILD-TYPE 
                            28                             35 
[1] "Del Peak 24(11q24.3)"
[1] 3
      DEL PEAK 24(11Q24.3) CNV DEL PEAK 24(11Q24.3) WILD-TYPE 
                            30                             33 
      DEL PEAK 24(11Q24.3) CNV DEL PEAK 24(11Q24.3) WILD-TYPE 
                            30                             33 
[1] "Del Peak 25(12q12)"
[1] 3
      DEL PEAK 25(12Q12) CNV DEL PEAK 25(12Q12) WILD-TYPE 
                          17                           46 
      DEL PEAK 25(12Q12) CNV DEL PEAK 25(12Q12) WILD-TYPE 
                          17                           46 
[1] "Del Peak 26(13q12.11)"
[1] 3
      DEL PEAK 26(13Q12.11) CNV DEL PEAK 26(13Q12.11) WILD-TYPE 
                             30                              33 
      DEL PEAK 26(13Q12.11) CNV DEL PEAK 26(13Q12.11) WILD-TYPE 
                             30                              33 
[1] "Del Peak 27(15q13.1)"
[1] 3
      DEL PEAK 27(15Q13.1) CNV DEL PEAK 27(15Q13.1) WILD-TYPE 
                            18                             45 
      DEL PEAK 27(15Q13.1) CNV DEL PEAK 27(15Q13.1) WILD-TYPE 
                            18                             45 
[1] "Del Peak 28(16q23.1)"
[1] 3
      DEL PEAK 28(16Q23.1) CNV DEL PEAK 28(16Q23.1) WILD-TYPE 
                            24                             39 
      DEL PEAK 28(16Q23.1) CNV DEL PEAK 28(16Q23.1) WILD-TYPE 
                            24                             39 
[1] "Del Peak 29(17q25.3)"
[1] 3
      DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE 
                            14                             49 
      DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE 
                            14                             49 
[1] "Del Peak 30(18q12.2)"
[1] 3
      DEL PEAK 30(18Q12.2) CNV DEL PEAK 30(18Q12.2) WILD-TYPE 
                            35                             28 
      DEL PEAK 30(18Q12.2) CNV DEL PEAK 30(18Q12.2) WILD-TYPE 
                            35                             28 
[1] "Del Peak 31(18q21.2)"
[1] 3
      DEL PEAK 31(18Q21.2) CNV DEL PEAK 31(18Q21.2) WILD-TYPE 
                            38                             25 
      DEL PEAK 31(18Q21.2) CNV DEL PEAK 31(18Q21.2) WILD-TYPE 
                            38                             25 
[1] "Del Peak 32(19p13.3)"
[1] 3
      DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE 
                            32                             31 
      DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE 
                            32                             31 
[1] "Del Peak 33(19q13.31)"
[1] 3
      DEL PEAK 33(19Q13.31) CNV DEL PEAK 33(19Q13.31) WILD-TYPE 
                             20                              43 
      DEL PEAK 33(19Q13.31) CNV DEL PEAK 33(19Q13.31) WILD-TYPE 
                             20                              43 
[1] "Del Peak 34(20p12.1)"
[1] 3
      DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE 
                             8                             55 
      DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE 
                             8                             55 
[1] "Del Peak 35(21q22.12)"
[1] 3
      DEL PEAK 35(21Q22.12) CNV DEL PEAK 35(21Q22.12) WILD-TYPE 
                             37                              26 
      DEL PEAK 35(21Q22.12) CNV DEL PEAK 35(21Q22.12) WILD-TYPE 
                             37                              26 
[1] "Del Peak 36(22q11.1)"
[1] 3
      DEL PEAK 36(22Q11.1) CNV DEL PEAK 36(22Q11.1) WILD-TYPE 
                            26                             37 
      DEL PEAK 36(22Q11.1) CNV DEL PEAK 36(22Q11.1) WILD-TYPE 
                            26                             37 
[1] "Del Peak 37(Xp22.2)"
[1] 3
      DEL PEAK 37(XP22.2) CNV DEL PEAK 37(XP22.2) WILD-TYPE 
                           27                            36 
      DEL PEAK 37(XP22.2) CNV DEL PEAK 37(XP22.2) WILD-TYPE 
                           27                            36 
[1] "Del Peak 38(Xp21.1)"
[1] 3
      DEL PEAK 38(XP21.1) CNV DEL PEAK 38(XP21.1) WILD-TYPE 
                           28                            35 
      DEL PEAK 38(XP21.1) CNV DEL PEAK 38(XP21.1) WILD-TYPE 
                           28                            35 
[1] "Del Peak 39(Xp11.3)"
[1] 3
      DEL PEAK 39(XP11.3) CNV DEL PEAK 39(XP11.3) WILD-TYPE 
                           31                            32 
      DEL PEAK 39(XP11.3) CNV DEL PEAK 39(XP11.3) WILD-TYPE 
                           31                            32 
[1] "Del Peak 40(Xq21.33)"
[1] 3
      DEL PEAK 40(XQ21.33) CNV DEL PEAK 40(XQ21.33) WILD-TYPE 
                            14                             49 
      DEL PEAK 40(XQ21.33) CNV DEL PEAK 40(XQ21.33) WILD-TYPE 
                            14                             49 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"          "METHLYATION_CNMF"

Input Data has 2 rows and 63 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"          "METHLYATION_CNMF"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 63 columns, 0 survival variables, and 2 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1p34.2)
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P34.2) CNV AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                       6                            16
  CLUS_2                       4                            11
  CLUS_3                       3                            23
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P34.2) CNV AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                       7                            23
  CLUS_2                       4                            10
  CLUS_3                       2                            17

Clustering(2) Variable = Amp Peak  2(1q42.3)
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q42.3) CNV AMP PEAK  2(1Q42.3) WILD-TYPE
  CLUS_1                      14                             8
  CLUS_2                      10                             5
  CLUS_3                       9                            17
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q42.3) CNV AMP PEAK  2(1Q42.3) WILD-TYPE
  CLUS_1                      20                            10
  CLUS_2                       7                             7
  CLUS_3                       6                            13

Clustering(3) Variable = Amp Peak  3(2q14.2)
D3V1, multiclass
        clus
vv       AMP PEAK  3(2Q14.2) CNV AMP PEAK  3(2Q14.2) WILD-TYPE
  CLUS_1                      11                            11
  CLUS_2                       3                            12
  CLUS_3                       6                            20
D3V2, multiclass
        clus
vv       AMP PEAK  3(2Q14.2) CNV AMP PEAK  3(2Q14.2) WILD-TYPE
  CLUS_1                      11                            19
  CLUS_2                       6                             8
  CLUS_3                       3                            16

Clustering(4) Variable = Amp Peak  4(3q26.2)
D4V1, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) CNV AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                      22                             0
  CLUS_2                      13                             2
  CLUS_3                      13                            13
D4V2, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) CNV AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                      29                             1
  CLUS_2                      10                             4
  CLUS_3                       9                            10

Clustering(5) Variable = Amp Peak  5(5p15.33)
D5V1, multiclass
        clus
vv       AMP PEAK  5(5P15.33) CNV AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                       16                              6
  CLUS_2                       10                              5
  CLUS_3                       13                             13
D5V2, multiclass
        clus
vv       AMP PEAK  5(5P15.33) CNV AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                       22                              8
  CLUS_2                        8                              6
  CLUS_3                        9                             10

Clustering(6) Variable = Amp Peak  6(6p21.1)
D6V1, multiclass
        clus
vv       AMP PEAK  6(6P21.1) CNV AMP PEAK  6(6P21.1) WILD-TYPE
  CLUS_1                       5                            17
  CLUS_2                       7                             8
  CLUS_3                       5                            21
D6V2, multiclass
        clus
vv       AMP PEAK  6(6P21.1) CNV AMP PEAK  6(6P21.1) WILD-TYPE
  CLUS_1                       9                            21
  CLUS_2                       3                            11
  CLUS_3                       5                            14

Clustering(7) Variable = Amp Peak  7(6q12)
D7V1, multiclass
        clus
vv       AMP PEAK  7(6Q12) CNV AMP PEAK  7(6Q12) WILD-TYPE
  CLUS_1                     4                          18
  CLUS_2                     5                          10
  CLUS_3                     6                          20
D7V2, multiclass
        clus
vv       AMP PEAK  7(6Q12) CNV AMP PEAK  7(6Q12) WILD-TYPE
  CLUS_1                     7                          23
  CLUS_2                     3                          11
  CLUS_3                     5                          14

Clustering(8) Variable = Amp Peak  8(7p11.2)
D8V1, multiclass
        clus
vv       AMP PEAK  8(7P11.2) CNV AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                      15                             7
  CLUS_2                      11                             4
  CLUS_3                      18                             8
D8V2, multiclass
        clus
vv       AMP PEAK  8(7P11.2) CNV AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                      21                             9
  CLUS_2                       9                             5
  CLUS_3                      14                             5

Clustering(9) Variable = Amp Peak  9(7q21.2)
D9V1, multiclass
        clus
vv       AMP PEAK  9(7Q21.2) CNV AMP PEAK  9(7Q21.2) WILD-TYPE
  CLUS_1                      14                             8
  CLUS_2                      14                             1
  CLUS_3                      14                            12
D9V2, multiclass
        clus
vv       AMP PEAK  9(7Q21.2) CNV AMP PEAK  9(7Q21.2) WILD-TYPE
  CLUS_1                      22                             8
  CLUS_2                       7                             7
  CLUS_3                      13                             6

Clustering(10) Variable = Amp Peak 10(8p11.21)
D10V1, multiclass
        clus
vv       AMP PEAK 10(8P11.21) CNV AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                       11                             11
  CLUS_2                        9                              6
  CLUS_3                       12                             14
D10V2, multiclass
        clus
vv       AMP PEAK 10(8P11.21) CNV AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                       15                             15
  CLUS_2                        5                              9
  CLUS_3                       12                              7

Clustering(11) Variable = Amp Peak 11(8q24.21)
D11V1, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) CNV AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                       20                              2
  CLUS_2                       14                              1
  CLUS_3                       19                              7
D11V2, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) CNV AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                       29                              1
  CLUS_2                       10                              4
  CLUS_3                       14                              5

Clustering(12) Variable = Amp Peak 12(10p11.21)
D12V1, multiclass
        clus
vv       AMP PEAK 12(10P11.21) CNV AMP PEAK 12(10P11.21) WILD-TYPE
  CLUS_1                         4                              18
  CLUS_2                         5                              10
  CLUS_3                         6                              20
D12V2, multiclass
        clus
vv       AMP PEAK 12(10P11.21) CNV AMP PEAK 12(10P11.21) WILD-TYPE
  CLUS_1                         8                              22
  CLUS_2                         2                              12
  CLUS_3                         5                              14

Clustering(13) Variable = Amp Peak 13(11p13)
D13V1, multiclass
        clus
vv       AMP PEAK 13(11P13) CNV AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                      5                           17
  CLUS_2                      5                           10
  CLUS_3                      8                           18
D13V2, multiclass
        clus
vv       AMP PEAK 13(11P13) CNV AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                      9                           21
  CLUS_2                      3                           11
  CLUS_3                      6                           13

Clustering(14) Variable = Amp Peak 14(11q13.3)
D14V1, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) CNV AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                       20                              2
  CLUS_2                        7                              8
  CLUS_3                       12                             14
D14V2, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) CNV AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                       22                              8
  CLUS_2                       11                              3
  CLUS_3                        6                             13

Clustering(15) Variable = Amp Peak 15(12p13.33)
D15V1, multiclass
        clus
vv       AMP PEAK 15(12P13.33) CNV AMP PEAK 15(12P13.33) WILD-TYPE
  CLUS_1                        16                               6
  CLUS_2                         9                               6
  CLUS_3                         6                              20
D15V2, multiclass
        clus
vv       AMP PEAK 15(12P13.33) CNV AMP PEAK 15(12P13.33) WILD-TYPE
  CLUS_1                        22                               8
  CLUS_2                         5                               9
  CLUS_3                         4                              15

Clustering(16) Variable = Amp Peak 16(12p12.1)
D16V1, multiclass
        clus
vv       AMP PEAK 16(12P12.1) CNV AMP PEAK 16(12P12.1) WILD-TYPE
  CLUS_1                       16                              6
  CLUS_2                       10                              5
  CLUS_3                        9                             17
D16V2, multiclass
        clus
vv       AMP PEAK 16(12P12.1) CNV AMP PEAK 16(12P12.1) WILD-TYPE
  CLUS_1                       22                              8
  CLUS_2                        6                              8
  CLUS_3                        7                             12

Clustering(17) Variable = Amp Peak 17(14q22.1)
D17V1, multiclass
        clus
vv       AMP PEAK 17(14Q22.1) CNV AMP PEAK 17(14Q22.1) WILD-TYPE
  CLUS_1                        9                             13
  CLUS_2                        7                              8
  CLUS_3                        6                             20
D17V2, multiclass
        clus
vv       AMP PEAK 17(14Q22.1) CNV AMP PEAK 17(14Q22.1) WILD-TYPE
  CLUS_1                       13                             17
  CLUS_2                        5                              9
  CLUS_3                        4                             15

Clustering(18) Variable = Amp Peak 18(17q12)
D18V1, multiclass
        clus
vv       AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                      5                           17
  CLUS_2                     10                            5
  CLUS_3                      8                           18
D18V2, multiclass
        clus
vv       AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                     12                           18
  CLUS_2                      3                           11
  CLUS_3                      8                           11

Clustering(19) Variable = Amp Peak 19(17q24.3)
D19V1, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) CNV AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                       10                             12
  CLUS_2                        9                              6
  CLUS_3                        9                             17
D19V2, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) CNV AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                       15                             15
  CLUS_2                        4                             10
  CLUS_3                        9                             10

Clustering(20) Variable = Amp Peak 20(18p11.32)
D20V1, multiclass
        clus
vv       AMP PEAK 20(18P11.32) CNV AMP PEAK 20(18P11.32) WILD-TYPE
  CLUS_1                         5                              17
  CLUS_2                        10                               5
  CLUS_3                         8                              18
D20V2, multiclass
        clus
vv       AMP PEAK 20(18P11.32) CNV AMP PEAK 20(18P11.32) WILD-TYPE
  CLUS_1                        12                              18
  CLUS_2                         6                               8
  CLUS_3                         5                              14

Clustering(21) Variable = Amp Peak 21(18q11.2)
D21V1, multiclass
        clus
vv       AMP PEAK 21(18Q11.2) CNV AMP PEAK 21(18Q11.2) WILD-TYPE
  CLUS_1                        6                             16
  CLUS_2                        1                             14
  CLUS_3                        9                             17
D21V2, multiclass
        clus
vv       AMP PEAK 21(18Q11.2) CNV AMP PEAK 21(18Q11.2) WILD-TYPE
  CLUS_1                        5                             25
  CLUS_2                        4                             10
  CLUS_3                        7                             12

Clustering(22) Variable = Amp Peak 22(19p13.2)
D22V1, multiclass
        clus
vv       AMP PEAK 22(19P13.2) CNV AMP PEAK 22(19P13.2) WILD-TYPE
  CLUS_1                        7                             15
  CLUS_2                        3                             12
  CLUS_3                        4                             22
D22V2, multiclass
        clus
vv       AMP PEAK 22(19P13.2) CNV AMP PEAK 22(19P13.2) WILD-TYPE
  CLUS_1                        9                             21
  CLUS_2                        3                             11
  CLUS_3                        2                             17

Clustering(23) Variable = Amp Peak 23(19p13.11)
D23V1, multiclass
        clus
vv       AMP PEAK 23(19P13.11) CNV AMP PEAK 23(19P13.11) WILD-TYPE
  CLUS_1                         4                              18
  CLUS_2                         8                               7
  CLUS_3                         4                              22
D23V2, multiclass
        clus
vv       AMP PEAK 23(19P13.11) CNV AMP PEAK 23(19P13.11) WILD-TYPE
  CLUS_1                         9                              21
  CLUS_2                         2                              12
  CLUS_3                         5                              14

Clustering(24) Variable = Amp Peak 24(19q12)
D24V1, multiclass
        clus
vv       AMP PEAK 24(19Q12) CNV AMP PEAK 24(19Q12) WILD-TYPE
  CLUS_1                      4                           18
  CLUS_2                      7                            8
  CLUS_3                     10                           16
D24V2, multiclass
        clus
vv       AMP PEAK 24(19Q12) CNV AMP PEAK 24(19Q12) WILD-TYPE
  CLUS_1                      7                           23
  CLUS_2                      6                            8
  CLUS_3                      8                           11

Clustering(25) Variable = Amp Peak 25(Xp11.4)
D25V1, multiclass
        clus
vv       AMP PEAK 25(XP11.4) CNV AMP PEAK 25(XP11.4) WILD-TYPE
  CLUS_1                       2                            20
  CLUS_2                       5                            10
  CLUS_3                       5                            21
D25V2, multiclass
        clus
vv       AMP PEAK 25(XP11.4) CNV AMP PEAK 25(XP11.4) WILD-TYPE
  CLUS_1                       5                            25
  CLUS_2                       3                            11
  CLUS_3                       4                            15

Clustering(26) Variable = Del Peak  1(1p36.13)
D26V1, multiclass
        clus
vv       DEL PEAK  1(1P36.13) CNV DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                        7                             15
  CLUS_2                        4                             11
  CLUS_3                        8                             18
D26V2, multiclass
        clus
vv       DEL PEAK  1(1P36.13) CNV DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                        8                             22
  CLUS_2                        2                             12
  CLUS_3                        9                             10

Clustering(27) Variable = Del Peak  2(1p13.2)
D27V1, multiclass
        clus
vv       DEL PEAK  2(1P13.2) CNV DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                       8                            14
  CLUS_2                       6                             9
  CLUS_3                       9                            17
D27V2, multiclass
        clus
vv       DEL PEAK  2(1P13.2) CNV DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                      10                            20
  CLUS_2                       4                            10
  CLUS_3                       9                            10

Clustering(28) Variable = Del Peak  3(1q44)
D28V1, multiclass
        clus
vv       DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                     1                          21
  CLUS_2                     3                          12
  CLUS_3                     4                          22
D28V2, multiclass
        clus
vv       DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                     3                          27
  CLUS_2                     1                          13
  CLUS_3                     4                          15

Clustering(29) Variable = Del Peak  4(2q22.1)
D29V1, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) CNV DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                       7                            15
  CLUS_2                       3                            12
  CLUS_3                       6                            20
D29V2, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) CNV DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                      10                            20
  CLUS_2                       3                            11
  CLUS_3                       3                            16

Clustering(30) Variable = Del Peak  5(2q34)
D30V1, multiclass
        clus
vv       DEL PEAK  5(2Q34) CNV DEL PEAK  5(2Q34) WILD-TYPE
  CLUS_1                     8                          14
  CLUS_2                     3                          12
  CLUS_3                     5                          21
D30V2, multiclass
        clus
vv       DEL PEAK  5(2Q34) CNV DEL PEAK  5(2Q34) WILD-TYPE
  CLUS_1                    10                          20
  CLUS_2                     5                           9
  CLUS_3                     1                          18

Clustering(31) Variable = Del Peak  6(3p26.1)
D31V1, multiclass
        clus
vv       DEL PEAK  6(3P26.1) CNV DEL PEAK  6(3P26.1) WILD-TYPE
  CLUS_1                      18                             4
  CLUS_2                      12                             3
  CLUS_3                      15                            11
D31V2, multiclass
        clus
vv       DEL PEAK  6(3P26.1) CNV DEL PEAK  6(3P26.1) WILD-TYPE
  CLUS_1                      25                             5
  CLUS_2                      10                             4
  CLUS_3                      10                             9

Clustering(32) Variable = Del Peak  7(3p14.3)
D32V1, multiclass
        clus
vv       DEL PEAK  7(3P14.3) CNV DEL PEAK  7(3P14.3) WILD-TYPE
  CLUS_1                      21                             1
  CLUS_2                      13                             2
  CLUS_3                      16                            10
D32V2, multiclass
        clus
vv       DEL PEAK  7(3P14.3) CNV DEL PEAK  7(3P14.3) WILD-TYPE
  CLUS_1                      27                             3
  CLUS_2                      12                             2
  CLUS_3                      11                             8

Clustering(33) Variable = Del Peak  8(3p14.2)
D33V1, multiclass
        clus
vv       DEL PEAK  8(3P14.2) CNV DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                      20                             2
  CLUS_2                      13                             2
  CLUS_3                      18                             8
D33V2, multiclass
        clus
vv       DEL PEAK  8(3P14.2) CNV DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                      26                             4
  CLUS_2                      12                             2
  CLUS_3                      13                             6

Clustering(34) Variable = Del Peak  9(3q11.1)
D34V1, multiclass
        clus
vv       DEL PEAK  9(3Q11.1) CNV DEL PEAK  9(3Q11.1) WILD-TYPE
  CLUS_1                       4                            18
  CLUS_2                       3                            12
  CLUS_3                       3                            23
D34V2, multiclass
        clus
vv       DEL PEAK  9(3Q11.1) CNV DEL PEAK  9(3Q11.1) WILD-TYPE
  CLUS_1                       5                            25
  CLUS_2                       2                            12
  CLUS_3                       3                            16

Clustering(35) Variable = Del Peak 10(3q26.31)
D35V1, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) CNV DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                        1                             21
  CLUS_2                        2                             13
  CLUS_3                        3                             23
D35V2, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) CNV DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                        1                             29
  CLUS_2                        1                             13
  CLUS_3                        4                             15

Clustering(36) Variable = Del Peak 11(4p15.2)
D36V1, multiclass
        clus
vv       DEL PEAK 11(4P15.2) CNV DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                      14                             8
  CLUS_2                       8                             7
  CLUS_3                      13                            13
D36V2, multiclass
        clus
vv       DEL PEAK 11(4P15.2) CNV DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                      18                            12
  CLUS_2                       7                             7
  CLUS_3                      10                             9

Clustering(37) Variable = Del Peak 12(4q22.1)
D37V1, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) CNV DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                      10                            12
  CLUS_2                       9                             6
  CLUS_3                      12                            14
D37V2, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) CNV DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                      16                            14
  CLUS_2                       6                             8
  CLUS_3                       9                            10

Clustering(38) Variable = Del Peak 13(5q11.2)
D38V1, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) CNV DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                      12                            10
  CLUS_2                      11                             4
  CLUS_3                      14                            12
D38V2, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) CNV DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                      21                             9
  CLUS_2                       3                            11
  CLUS_3                      13                             6

Clustering(39) Variable = Del Peak 14(5q12.3)
D39V1, multiclass
        clus
vv       DEL PEAK 14(5Q12.3) CNV DEL PEAK 14(5Q12.3) WILD-TYPE
  CLUS_1                      13                             9
  CLUS_2                      11                             4
  CLUS_3                      15                            11
D39V2, multiclass
        clus
vv       DEL PEAK 14(5Q12.3) CNV DEL PEAK 14(5Q12.3) WILD-TYPE
  CLUS_1                      22                             8
  CLUS_2                       4                            10
  CLUS_3                      13                             6

Clustering(40) Variable = Del Peak 15(6p25.3)
D40V1, multiclass
        clus
vv       DEL PEAK 15(6P25.3) CNV DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                       9                            13
  CLUS_2                       5                            10
  CLUS_3                      10                            16
D40V2, multiclass
        clus
vv       DEL PEAK 15(6P25.3) CNV DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                       9                            21
  CLUS_2                       5                             9
  CLUS_3                      10                             9

Clustering(41) Variable = Del Peak 16(6q14.2)
D41V1, multiclass
        clus
vv       DEL PEAK 16(6Q14.2) CNV DEL PEAK 16(6Q14.2) WILD-TYPE
  CLUS_1                       8                            14
  CLUS_2                       2                            13
  CLUS_3                       6                            20
D41V2, multiclass
        clus
vv       DEL PEAK 16(6Q14.2) CNV DEL PEAK 16(6Q14.2) WILD-TYPE
  CLUS_1                       9                            21
  CLUS_2                       3                            11
  CLUS_3                       4                            15

Clustering(42) Variable = Del Peak 17(7q31.1)
D42V1, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) CNV DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                       8                            14
  CLUS_2                       2                            13
  CLUS_3                      11                            15
D42V2, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) CNV DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                       9                            21
  CLUS_2                       5                             9
  CLUS_3                       7                            12

Clustering(43) Variable = Del Peak 18(7q36.2)
D43V1, multiclass
        clus
vv       DEL PEAK 18(7Q36.2) CNV DEL PEAK 18(7Q36.2) WILD-TYPE
  CLUS_1                       9                            13
  CLUS_2                       4                            11
  CLUS_3                      14                            12
D43V2, multiclass
        clus
vv       DEL PEAK 18(7Q36.2) CNV DEL PEAK 18(7Q36.2) WILD-TYPE
  CLUS_1                      12                            18
  CLUS_2                       7                             7
  CLUS_3                       8                            11

Clustering(44) Variable = Del Peak 19(8p23.2)
D44V1, multiclass
        clus
vv       DEL PEAK 19(8P23.2) CNV DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                      14                             8
  CLUS_2                       6                             9
  CLUS_3                       9                            17
D44V2, multiclass
        clus
vv       DEL PEAK 19(8P23.2) CNV DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                      16                            14
  CLUS_2                       5                             9
  CLUS_3                       8                            11

Clustering(45) Variable = Del Peak 20(9p21.3)
D45V1, multiclass
        clus
vv       DEL PEAK 20(9P21.3) CNV DEL PEAK 20(9P21.3) WILD-TYPE
  CLUS_1                      22                             0
  CLUS_2                      12                             3
  CLUS_3                      18                             8
D45V2, multiclass
        clus
vv       DEL PEAK 20(9P21.3) CNV DEL PEAK 20(9P21.3) WILD-TYPE
  CLUS_1                      28                             2
  CLUS_2                      12                             2
  CLUS_3                      12                             7

Clustering(46) Variable = Del Peak 21(10p11.21)
D46V1, multiclass
        clus
vv       DEL PEAK 21(10P11.21) CNV DEL PEAK 21(10P11.21) WILD-TYPE
  CLUS_1                         9                              13
  CLUS_2                         5                              10
  CLUS_3                         5                              21
D46V2, multiclass
        clus
vv       DEL PEAK 21(10P11.21) CNV DEL PEAK 21(10P11.21) WILD-TYPE
  CLUS_1                        13                              17
  CLUS_2                         3                              11
  CLUS_3                         3                              16

Clustering(47) Variable = Del Peak 22(10q23.31)
D47V1, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) CNV DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                        14                               8
  CLUS_2                         5                              10
  CLUS_3                        11                              15
D47V2, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) CNV DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                        17                              13
  CLUS_2                         4                              10
  CLUS_3                         9                              10

Clustering(48) Variable = Del Peak 23(11p15.4)
D48V1, multiclass
        clus
vv       DEL PEAK 23(11P15.4) CNV DEL PEAK 23(11P15.4) WILD-TYPE
  CLUS_1                       14                              8
  CLUS_2                        5                             10
  CLUS_3                        9                             17
D48V2, multiclass
        clus
vv       DEL PEAK 23(11P15.4) CNV DEL PEAK 23(11P15.4) WILD-TYPE
  CLUS_1                       18                             12
  CLUS_2                        4                             10
  CLUS_3                        6                             13

Clustering(49) Variable = Del Peak 24(11q24.3)
D49V1, multiclass
        clus
vv       DEL PEAK 24(11Q24.3) CNV DEL PEAK 24(11Q24.3) WILD-TYPE
  CLUS_1                       17                              5
  CLUS_2                        3                             12
  CLUS_3                       10                             16
D49V2, multiclass
        clus
vv       DEL PEAK 24(11Q24.3) CNV DEL PEAK 24(11Q24.3) WILD-TYPE
  CLUS_1                       16                             14
  CLUS_2                        6                              8
  CLUS_3                        8                             11

Clustering(50) Variable = Del Peak 25(12q12)
D50V1, multiclass
        clus
vv       DEL PEAK 25(12Q12) CNV DEL PEAK 25(12Q12) WILD-TYPE
  CLUS_1                      6                           16
  CLUS_2                      5                           10
  CLUS_3                      6                           20
D50V2, multiclass
        clus
vv       DEL PEAK 25(12Q12) CNV DEL PEAK 25(12Q12) WILD-TYPE
  CLUS_1                      7                           23
  CLUS_2                      4                           10
  CLUS_3                      6                           13

Clustering(51) Variable = Del Peak 26(13q12.11)
D51V1, multiclass
        clus
vv       DEL PEAK 26(13Q12.11) CNV DEL PEAK 26(13Q12.11) WILD-TYPE
  CLUS_1                        15                               7
  CLUS_2                         6                               9
  CLUS_3                         9                              17
D51V2, multiclass
        clus
vv       DEL PEAK 26(13Q12.11) CNV DEL PEAK 26(13Q12.11) WILD-TYPE
  CLUS_1                        18                              12
  CLUS_2                         7                               7
  CLUS_3                         5                              14

Clustering(52) Variable = Del Peak 27(15q13.1)
D52V1, multiclass
        clus
vv       DEL PEAK 27(15Q13.1) CNV DEL PEAK 27(15Q13.1) WILD-TYPE
  CLUS_1                        5                             17
  CLUS_2                        5                             10
  CLUS_3                        8                             18
D52V2, multiclass
        clus
vv       DEL PEAK 27(15Q13.1) CNV DEL PEAK 27(15Q13.1) WILD-TYPE
  CLUS_1                        8                             22
  CLUS_2                        3                             11
  CLUS_3                        7                             12

Clustering(53) Variable = Del Peak 28(16q23.1)
D53V1, multiclass
        clus
vv       DEL PEAK 28(16Q23.1) CNV DEL PEAK 28(16Q23.1) WILD-TYPE
  CLUS_1                        4                             18
  CLUS_2                        6                              9
  CLUS_3                       14                             12
D53V2, multiclass
        clus
vv       DEL PEAK 28(16Q23.1) CNV DEL PEAK 28(16Q23.1) WILD-TYPE
  CLUS_1                        8                             22
  CLUS_2                        4                             10
  CLUS_3                       12                              7

Clustering(54) Variable = Del Peak 29(17q25.3)
D54V1, multiclass
        clus
vv       DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE
  CLUS_1                        6                             16
  CLUS_2                        3                             12
  CLUS_3                        5                             21
D54V2, multiclass
        clus
vv       DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE
  CLUS_1                        6                             24
  CLUS_2                        3                             11
  CLUS_3                        5                             14

Clustering(55) Variable = Del Peak 30(18q12.2)
D55V1, multiclass
        clus
vv       DEL PEAK 30(18Q12.2) CNV DEL PEAK 30(18Q12.2) WILD-TYPE
  CLUS_1                       11                             11
  CLUS_2                        6                              9
  CLUS_3                       18                              8
D55V2, multiclass
        clus
vv       DEL PEAK 30(18Q12.2) CNV DEL PEAK 30(18Q12.2) WILD-TYPE
  CLUS_1                       15                             15
  CLUS_2                        6                              8
  CLUS_3                       14                              5

Clustering(56) Variable = Del Peak 31(18q21.2)
D56V1, multiclass
        clus
vv       DEL PEAK 31(18Q21.2) CNV DEL PEAK 31(18Q21.2) WILD-TYPE
  CLUS_1                       13                              9
  CLUS_2                        6                              9
  CLUS_3                       19                              7
D56V2, multiclass
        clus
vv       DEL PEAK 31(18Q21.2) CNV DEL PEAK 31(18Q21.2) WILD-TYPE
  CLUS_1                       16                             14
  CLUS_2                        7                              7
  CLUS_3                       15                              4

Clustering(57) Variable = Del Peak 32(19p13.3)
D57V1, multiclass
        clus
vv       DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE
  CLUS_1                       13                              9
  CLUS_2                        9                              6
  CLUS_3                       10                             16
D57V2, multiclass
        clus
vv       DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE
  CLUS_1                       16                             14
  CLUS_2                        8                              6
  CLUS_3                        8                             11

Clustering(58) Variable = Del Peak 33(19q13.31)
D58V1, multiclass
        clus
vv       DEL PEAK 33(19Q13.31) CNV DEL PEAK 33(19Q13.31) WILD-TYPE
  CLUS_1                         9                              13
  CLUS_2                         6                               9
  CLUS_3                         5                              21
D58V2, multiclass
        clus
vv       DEL PEAK 33(19Q13.31) CNV DEL PEAK 33(19Q13.31) WILD-TYPE
  CLUS_1                        15                              15
  CLUS_2                         3                              11
  CLUS_3                         2                              17

Clustering(59) Variable = Del Peak 34(20p12.1)
D59V1, multiclass
        clus
vv       DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE
  CLUS_1                        1                             21
  CLUS_2                        4                             11
  CLUS_3                        3                             23
D59V2, multiclass
        clus
vv       DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE
  CLUS_1                        3                             27
  CLUS_2                        1                             13
  CLUS_3                        4                             15

Clustering(60) Variable = Del Peak 35(21q22.12)
D60V1, multiclass
        clus
vv       DEL PEAK 35(21Q22.12) CNV DEL PEAK 35(21Q22.12) WILD-TYPE
  CLUS_1                        14                               8
  CLUS_2                         6                               9
  CLUS_3                        17                               9
D60V2, multiclass
        clus
vv       DEL PEAK 35(21Q22.12) CNV DEL PEAK 35(21Q22.12) WILD-TYPE
  CLUS_1                        15                              15
  CLUS_2                         8                               6
  CLUS_3                        14                               5

Clustering(61) Variable = Del Peak 36(22q11.1)
D61V1, multiclass
        clus
vv       DEL PEAK 36(22Q11.1) CNV DEL PEAK 36(22Q11.1) WILD-TYPE
  CLUS_1                        6                             16
  CLUS_2                        7                              8
  CLUS_3                       13                             13
D61V2, multiclass
        clus
vv       DEL PEAK 36(22Q11.1) CNV DEL PEAK 36(22Q11.1) WILD-TYPE
  CLUS_1                        7                             23
  CLUS_2                        7                              7
  CLUS_3                       12                              7

Clustering(62) Variable = Del Peak 37(Xp22.2)
D62V1, multiclass
        clus
vv       DEL PEAK 37(XP22.2) CNV DEL PEAK 37(XP22.2) WILD-TYPE
  CLUS_1                      12                            10
  CLUS_2                       5                            10
  CLUS_3                      10                            16
D62V2, multiclass
        clus
vv       DEL PEAK 37(XP22.2) CNV DEL PEAK 37(XP22.2) WILD-TYPE
  CLUS_1                      14                            16
  CLUS_2                       5                             9
  CLUS_3                       8                            11

Clustering(63) Variable = Del Peak 38(Xp21.1)
D63V1, multiclass
        clus
vv       DEL PEAK 38(XP21.1) CNV DEL PEAK 38(XP21.1) WILD-TYPE
  CLUS_1                      13                             9
  CLUS_2                       5                            10
  CLUS_3                      10                            16
D63V2, multiclass
        clus
vv       DEL PEAK 38(XP21.1) CNV DEL PEAK 38(XP21.1) WILD-TYPE
  CLUS_1                      15                            15
  CLUS_2                       5                             9
  CLUS_3                       8                            11

Clustering(64) Variable = Del Peak 39(Xp11.3)
D64V1, multiclass
        clus
vv       DEL PEAK 39(XP11.3) CNV DEL PEAK 39(XP11.3) WILD-TYPE
  CLUS_1                      13                             9
  CLUS_2                       4                            11
  CLUS_3                      14                            12
D64V2, multiclass
        clus
vv       DEL PEAK 39(XP11.3) CNV DEL PEAK 39(XP11.3) WILD-TYPE
  CLUS_1                      15                            15
  CLUS_2                       8                             6
  CLUS_3                       8                            11

Clustering(65) Variable = Del Peak 40(Xq21.33)
D65V1, multiclass
        clus
vv       DEL PEAK 40(XQ21.33) CNV DEL PEAK 40(XQ21.33) WILD-TYPE
  CLUS_1                        5                             17
  CLUS_2                        1                             14
  CLUS_3                        8                             18
D65V2, multiclass
        clus
vv       DEL PEAK 40(XQ21.33) CNV DEL PEAK 40(XQ21.33) WILD-TYPE
  CLUS_1                        6                             24
  CLUS_2                        3                             11
  CLUS_3                        5                             14
                V1                 V2 
         "CN_CNMF" "METHLYATION_CNMF" 
> q(save="no")
